genome.fa.s3.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  214  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69730398--69730585	88	2.1	88	79	4	193	31	13	19	36	1.90
69730400--69730585	29	6.4	30	83	2	150	31	13	19	36	1.90
69732451--69732790	41	8.3	41	90	0	536	23	27	19	30	1.98
69732457--69732790	82	4.1	82	99	0	659	23	27	19	29	1.98
69733004--69733054	19	2.8	18	78	3	57	43	19	1	35	1.63
69735974--69736024	15	3.0	18	77	16	72	21	23	21	33	1.97
69738825--69738959	5	27.6	5	89	7	215	59	0	0	40	1.03
69742363--69742431	20	3.5	20	89	0	93	28	5	5	59	1.44
69742438--69742485	16	2.8	18	81	12	57	39	0	0	60	0.97
69742605--69742647	22	1.9	23	90	4	70	41	0	0	58	0.98
69743195--69743235	15	2.6	17	74	18	52	58	0	0	41	0.98
69746005--69746049	22	2.0	22	83	8	56	33	13	24	28	1.93
69745985--69746098	24	4.8	24	69	14	76	34	18	21	25	1.96
69754109--69754200	47	2.0	47	97	0	175	38	20	8	32	1.83
69763799--69763852	18	3.0	18	97	0	99	22	7	20	50	1.73
69769315--69769346	12	2.6	13	85	14	50	71	0	0	28	0.86
69769610--69769666	7	7.9	7	75	21	55	70	3	0	26	1.03
69769609--69769665	22	2.6	22	86	13	82	70	3	0	26	1.03
69769610--69769666	29	2.0	29	83	13	73	70	3	0	26	1.03
69770018--69770101	36	2.4	36	77	15	86	51	3	3	41	1.36
69771804--69771969	48	3.5	48	77	3	199	29	17	25	27	1.97
69771804--69772002	96	2.1	96	88	3	294	27	18	26	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69774425--69774461	15	2.4	16	86	8	51	51	2	0	45	1.15
69774552--69774625	33	2.3	33	86	13	102	52	6	1	39	1.36
69776507--69776545	14	2.8	14	92	0	60	38	10	20	30	1.86
69776998--69777049	15	3.2	15	73	19	50	42	1	1	53	1.23
69777082--69777118	16	2.3	16	86	13	58	40	0	0	59	0.97
69777129--69777184	22	2.6	22	83	5	62	51	0	0	48	1.00
69777562--69777624	22	3.0	21	72	6	65	38	19	22	20	1.94
69779863--69780088	48	4.8	48	74	12	198	27	24	19	27	1.99
69780169--69780211	11	3.9	11	93	0	68	20	27	20	30	1.98
69780172--69780216	11	4.1	11	91	0	54	24	26	17	31	1.97
69785289--69785386	28	3.6	28	82	8	121	58	5	15	21	1.56
69785281--69785384	54	1.9	54	88	3	156	58	5	14	21	1.57
69786613--69786667	27	2.0	27	100	0	110	43	27	10	18	1.83
69786976--69787017	21	2.0	21	81	9	50	35	9	2	52	1.47
69789993--69790119	65	1.9	67	91	3	213	20	24	7	47	1.76
69790630--69790702	36	2.0	36	100	0	146	32	5	13	47	1.66
69797486--69797524	19	2.1	19	100	0	78	38	25	15	20	1.92
69797830--69797870	13	3.1	13	82	6	55	53	31	0	14	1.41
69803627--69803940	48	6.5	48	78	8	316	28	19	28	23	1.98
69803610--69803943	144	2.3	144	85	4	424	29	19	28	23	1.98
69811373--69811695	96	3.4	95	81	2	369	28	17	28	25	1.98
69811365--69811694	144	2.3	145	84	4	409	28	17	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69811364--69811695	48	6.9	48	79	4	330	28	17	28	25	1.97
69812329--69812412	35	2.4	35	85	0	114	25	13	27	34	1.93
69812462--69812591	68	2.0	67	83	8	169	34	19	22	23	1.96
69814176--69814254	25	3.3	23	77	15	79	53	5	1	40	1.31
69815967--69816015	20	2.5	21	77	12	59	42	12	8	36	1.72
69822824--69822935	27	4.2	26	85	7	143	37	23	24	15	1.93
69822824--69822935	54	2.1	54	88	3	163	37	23	24	15	1.93
69826998--69827037	20	2.0	21	85	5	55	42	12	7	37	1.71
69829229--69829316	40	2.2	40	84	8	108	46	13	9	30	1.74
69829246--69829318	20	3.7	20	75	12	69	45	16	6	31	1.74
69829374--69829441	33	2.1	33	88	5	102	50	20	8	20	1.75
69829495--69829535	20	2.0	20	85	9	55	41	14	4	39	1.67
69831896--69831989	42	2.2	42	82	0	125	17	27	30	24	1.97
69832175--69832234	28	2.1	28	90	0	93	20	20	41	18	1.90
69835655--69835683	8	3.8	8	90	9	51	10	0	0	89	0.48
69835655--69835683	15	1.9	15	100	0	58	10	0	0	89	0.48
69837910--69837942	16	2.0	17	88	5	50	57	0	0	42	0.98
69837910--69837952	18	2.5	17	84	3	50	55	0	0	44	0.99
69855033--69855067	3	11.7	3	100	0	70	34	0	0	65	0.93
69863016--69863054	20	2.0	20	85	5	53	46	7	20	25	1.77
69864409--69864469	24	2.5	25	86	5	88	16	26	21	36	1.94
69864331--69864467	26	5.5	24	72	14	84	17	24	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69864357--69864499	74	1.9	74	80	8	166	19	25	21	33	1.97
69869982--69870017	9	4.0	9	88	0	54	25	0	8	66	1.19
69870051--69870088	16	2.2	17	86	13	51	26	2	0	71	1.00
69871115--69871184	31	2.3	31	80	9	83	45	12	5	35	1.66
69872322--69872355	15	2.4	14	90	9	52	29	0	2	67	1.05
69878118--69878184	20	3.8	18	70	25	54	40	0	0	59	0.97
69881357--69881389	16	2.0	17	88	5	50	48	15	3	33	1.60
69882525--69882584	30	2.0	30	93	0	102	38	10	6	45	1.64
69883754--69883853	49	2.0	49	96	0	182	45	6	6	43	1.53
69883961--69884033	29	2.5	29	84	4	103	35	9	16	38	1.81
69884896--69884951	26	2.2	25	83	3	67	14	3	7	75	1.16
69885020--69885081	32	1.9	32	96	0	115	27	9	19	43	1.82
69889891--69890048	78	2.0	78	95	2	282	27	17	20	34	1.95
69900237--69900339	50	2.1	50	96	0	188	36	26	13	23	1.92
69900978--69901021	19	2.4	18	88	7	70	43	13	2	40	1.57
69901595--69901842	125	2.0	125	98	0	478	31	20	14	33	1.93
69904016--69904138	33	3.7	33	96	0	228	17	9	42	30	1.82
69907368--69907434	33	2.0	33	100	0	134	28	14	17	38	1.90
69907514--69907652	69	2.0	69	100	0	278	33	7	21	37	1.81
69909189--69909272	42	2.0	42	95	0	150	45	14	10	29	1.78
69909300--69909344	19	2.4	19	85	10	65	42	13	2	42	1.56
69912416--69912440	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69913428--69913465	13	3.0	13	80	7	51	26	13	26	34	1.93
69926070--69926250	40	4.6	40	90	2	258	24	25	24	25	2.00
69937023--69937402	76	5.1	74	78	3	330	24	22	19	33	1.97
69937121--69937402	149	1.9	151	83	2	372	24	21	20	32	1.98
69941563--69941595	17	1.9	17	93	0	57	48	0	0	51	1.00
69941572--69941614	20	2.2	20	82	0	50	51	2	0	46	1.13
69941681--69941718	10	3.7	10	86	6	58	42	0	0	57	0.98
69941885--69941909	8	3.1	8	100	0	50	24	0	0	76	0.80
69942695--69942762	26	2.7	26	81	9	77	52	1	0	45	1.09
69943010--69943056	23	2.1	22	84	7	60	27	2	2	68	1.13
69952557--69952586	13	2.2	14	94	5	53	50	0	3	46	1.18
69953789--69953891	51	2.0	51	84	3	136	42	11	19	26	1.85
69954227--69954273	15	3.2	15	81	3	60	36	2	12	48	1.53
69954904--69954944	19	2.2	19	87	12	59	46	0	24	29	1.53
69964699--69965312	47	13.1	47	85	4	844	33	11	29	25	1.91
69964721--69965312	94	6.3	94	95	1	1044	32	11	29	26	1.91
69968965--69969090	39	3.2	39	94	0	207	27	30	20	21	1.98
69971071--69971198	29	4.5	28	88	2	175	32	25	12	28	1.92
69971070--69971198	57	2.3	57	87	2	188	32	26	12	28	1.92
69985770--69986038	136	2.0	136	93	0	466	30	18	19	31	1.96
69988010--69988034	13	1.9	13	100	0	50	16	40	32	12	1.84
69994053--69994145	27	3.4	27	96	0	168	44	12	23	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70001217--70001278	27	2.3	27	88	0	97	41	14	22	20	1.89
70004683--70004954	48	5.7	47	73	8	158	25	29	18	26	1.98
70009956--70009988	17	2.0	16	94	5	57	60	3	6	30	1.36
70013781--70013807	11	2.5	11	100	0	54	40	0	7	51	1.30
70013927--70013984	25	2.3	24	77	11	62	34	3	3	58	1.32
70013941--70014034	28	3.4	27	72	12	84	35	5	3	56	1.38
70014208--70014242	14	2.5	14	90	0	52	40	2	2	54	1.30
70014190--70014250	24	2.5	23	82	15	70	36	3	4	55	1.38
70014240--70014270	12	2.6	12	94	0	53	32	3	0	64	1.09
70014214--70014270	22	2.5	24	78	16	68	35	3	1	59	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325