Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  287  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93781685--93781728
21
2.1
21
83
8
54
29
25
20
25
1.99
93786359--93786466
26
4.2
26
91
0
171
37
23
6
33
1.80
93789823--93789891
31
2.2
30
84
5
84
28
39
15
15
1.89
93792788--93792953
82
2.0
82
96
0
305
37
6
11
44
1.67
93797780--93797815
18
2.0
18
100
0
72
33
22
0
44
1.53
93799746--93799814
33
2.0
35
94
5
124
26
14
14
44
1.83
93802464--93802502
19
2.2
19
86
9
55
41
2
0
56
1.13
93803809--93803964
52
3.0
52
78
8
181
26
16
26
30
1.97
93809673--93809714
20
2.1
20
100
0
84
35
4
23
35
1.76
93810688--93810894
52
4.1
50
78
13
178
25
16
27
30
1.97
93810807--93810897
46
2.0
46
84
0
119
24
16
28
30
1.96
93813514--93813569
27
2.1
27
86
0
76
41
8
23
26
1.84
93823228--93823287
31
2.0
30
87
9
86
18
15
11
55
1.70
93823660--93823738
21
3.8
20
76
14
79
54
8
5
31
1.53
93823822--93823867
24
1.9
24
86
8
67
45
4
2
47
1.34
93826160--93826340
40
4.6
40
90
1
258
20
27
24
27
1.99
93830685--93830709
4
6.2
4
100
0
50
52
0
0
48
1.00
93831821--93831856
9
4.0
9
96
0
63
69
8
0
22
1.15
93833876--93833935
29
2.1
29
80
0
66
36
11
30
21
1.89
93837430--93837472
20
2.1
20
82
4
50
53
0
2
44
1.13
93837420--93837487
29
2.4
28
79
18
86
50
0
1
48
1.10
93844702--93844880
96
1.8
96
85
5
252
25
30
18
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93844748--93844965
48
4.6
49
78
11
197
24
30
19
25
1.98
93851891--93851929
20
1.9
21
84
5
53
15
2
7
74
1.15
93855937--93855966
14
2.1
14
93
0
51
46
36
0
16
1.47
93865654--93865716
27
2.3
27
97
0
117
28
38
7
25
1.84
93875356--93875390
17
2.0
18
94
5
63
17
40
25
17
1.90
93876822--93876852
5
6.0
5
92
7
53
80
0
0
19
0.71
93876819--93876852
11
3.2
11
95
4
61
79
0
0
20
0.73
93882490--93882532
10
4.4
10
79
5
52
76
0
0
23
0.78
93882492--93882532
17
2.3
17
91
8
64
75
0
0
24
0.80
93884545--93884583
12
3.2
12
85
10
53
71
0
25
2
0.98
93884540--93884583
22
1.9
22
90
9
70
72
0
25
2
0.96
93896217--93896265
20
2.7
18
77
22
57
51
4
2
42
1.32
93896250--93896319
32
2.3
30
83
11
88
54
2
2
40
1.30
93898320--93898390
27
2.6
27
84
0
97
23
25
15
35
1.94
93903765--93903809
23
2.0
23
82
8
56
37
22
11
28
1.88
93909663--93909711
21
2.3
21
75
0
53
40
6
0
53
1.26
93909916--93909955
20
2.0
20
95
0
71
50
7
5
37
1.53
93912238--93912393
68
2.3
69
93
4
271
54
4
7
33
1.48
93912681--93912738
22
2.7
21
76
10
53
43
17
1
37
1.59
93912717--93912804
19
4.8
19
84
8
119
39
15
10
34
1.82
93912729--93912797
35
1.9
36
91
2
113
40
15
10
33
1.81
93916849--93916913
32
2.0
34
84
6
89
32
24
16
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93918758--93918865
26
4.2
26
90
0
180
38
25
6
29
1.81
93921231--93921261
16
1.9
16
93
0
53
41
9
3
45
1.53
93921737--93921797
30
2.0
30
100
0
122
44
9
9
36
1.71
93923622--93923679
25
2.3
25
84
0
71
36
20
18
24
1.95
93932573--93932610
17
2.2
18
90
4
60
39
0
5
55
1.23
93932923--93932955
11
2.9
12
86
13
52
33
0
0
66
0.92
93933080--93933137
30
1.9
30
89
6
91
56
6
5
31
1.47
93935077--93935143
32
2.1
32
97
0
125
25
17
5
50
1.69
93943742--93943817
24
3.2
24
66
26
70
44
14
9
31
1.76
93943742--93943838
48
2.0
48
100
0
194
45
14
8
31
1.74
93950288--93950432
47
3.1
47
69
16
131
44
2
4
48
1.35
93950269--93950476
91
2.3
91
92
0
335
45
3
4
46
1.39
93950391--93950451
28
2.2
28
85
5
81
45
0
3
50
1.17
93950309--93950451
44
3.2
43
69
20
121
46
2
3
48
1.31
93950503--93950691
59
3.2
57
68
19
152
41
3
3
51
1.35
93950530--93950728
66
3.2
64
67
19
177
41
3
6
49
1.42
93950492--93950789
120
2.5
120
93
1
508
42
2
4
50
1.36
93950565--93950752
61
3.1
61
69
14
190
42
1
6
49
1.38
93950617--93950668
15
3.6
15
80
12
56
44
0
1
53
1.11
93950566--93950749
59
3.1
58
67
22
155
42
1
6
49
1.38
93950733--93950767
18
2.0
17
88
5
52
45
0
0
54
0.99
93950932--93951022
45
2.0
44
85
2
119
35
27
5
31
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93951001--93951070
16
4.4
16
94
0
95
34
34
0
31
1.58
93953473--93953541
22
3.5
19
81
12
77
62
0
2
34
1.10
93953497--93953597
33
3.0
34
75
20
95
58
0
5
35
1.23
93957074--93957111
18
2.1
19
90
5
60
39
0
7
52
1.31
93957081--93957152
20
3.6
19
81
10
74
38
1
6
52
1.37
93957074--93957124
19
2.7
19
85
8
61
41
0
5
52
1.25
93968137--93968189
26
2.0
26
85
0
70
20
20
26
32
1.98
93968845--93968879
17
2.1
17
88
0
52
20
20
14
45
1.85
93968871--93968943
25
2.9
24
71
15
58
31
17
13
36
1.89
93978533--93978558
9
2.9
9
100
0
52
80
0
19
0
0.71
93978913--93978974
29
2.1
30
91
8
101
25
4
11
58
1.53
93980806--93980867
31
2.0
31
90
0
97
30
12
24
32
1.93
93981708--93981743
17
2.1
17
89
0
54
33
0
2
63
1.08
93991705--93991896
40
4.8
40
90
2
253
25
30
21
21
1.99
93999499--93999730
40
5.8
40
89
2
288
27
28
21
21
1.99
94010607--94010675
30
2.3
31
80
7
79
47
26
5
20
1.72
94010624--94010681
30
1.9
30
89
6
91
50
24
6
18
1.72
94013948--94014017
34
2.1
34
89
5
106
51
1
1
45
1.18
94017683--94017909
49
4.7
49
75
12
184
24
28
20
26
1.99
94017827--94018003
94
1.9
95
84
1
239
24
26
19
29
1.98
94017681--94018001
48
6.8
46
74
11
188
24
28
20
27
1.99
94030502--94030611
49
2.2
49
85
3
141
20
25
25
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94030671--94030797
46
2.8
45
85
8
168
24
27
18
29
1.98
94042019--94042095
35
2.2
35
88
4
111
24
15
24
35
1.94
94045119--94045192
26
2.8
26
83
0
103
16
21
22
39
1.92
94055705--94055757
20
2.7
19
78
16
63
43
0
0
56
0.99
94055714--94055776
31
2.0
31
87
6
90
44
1
0
53
1.10
94057525--94057579
15
3.6
16
76
14
53
32
1
0
65
1.03
94062697--94062740
17
2.5
18
86
13
65
18
0
6
75
1.02
94063239--94063529
145
2.0
145
97
0
546
22
21
29
26
1.99
94065400--94065444
24
1.9
24
90
4
74
48
20
15
15
1.80
94066505--94066637
60
2.2
62
87
4
191
56
12
0
31
1.36
94066806--94066868
24
2.7
23
80
11
74
0
30
0
69
0.88
94066815--94066868
19
2.7
21
80
13
60
0
33
0
66
0.92
94066812--94066868
13
4.2
14
78
13
66
0
33
0
66
0.92
94073840--94073899
3
21.0
3
74
16
56
36
1
1
60
1.17
94074025--94074076
3
17.7
3
80
11
63
38
0
1
59
1.08
94074025--94074076
16
3.3
16
83
2
70
38
0
1
59
1.08
94074107--94074141
17
2.1
17
88
0
52
74
5
17
2
1.14
94074497--94074537
17
2.5
17
80
15
50
58
0
17
24
1.38
94075624--94075872
128
1.9
129
89
2
385
36
18
16
28
1.93
94077897--94077969
20
3.5
22
75
17
75
9
19
52
19
1.73
94077956--94077991
11
3.5
11
85
14
51
13
16
50
19
1.79
94079276--94079326
20
2.5
20
83
3
57
21
21
15
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94079359--94079496
39
3.5
40
88
4
201
13
25
23
38
1.90
94087649--94087682
16
2.1
16
100
0
68
29
11
5
52
1.61
94096519--94096611
44
2.0
46
85
6
127
40
1
4
53
1.27
94096548--94096629
35
2.4
33
80
13
103
41
1
1
56
1.15
94096670--94096757
21
4.3
20
72
18
67
31
1
3
63
1.18
94096682--94096738
22
2.7
21
83
10
71
31
1
3
63
1.22
94096682--94096758
9
7.8
9
73
21
57
32
1
2
63
1.16
94096682--94096767
30
2.8
31
75
12
86
34
1
2
61
1.16
94096599--94096871
122
2.2
123
80
12
335
39
3
3
54
1.33
94096834--94096898
30
2.2
29
83
8
78
43
0
1
55
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325