genome.fa.s3.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  115  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37215641--37215718	41	1.9	41	97	0	147	17	21	38	21	1.93
37215195--37215920	363	2.0	363	99	0	1434	24	25	25	24	2.00
37220770--37220839	25	2.8	25	97	0	131	25	24	25	24	2.00
37220872--37220902	16	1.9	16	93	0	53	35	16	19	29	1.93
37221052--37221236	27	6.9	27	76	9	189	26	21	17	35	1.95
37221052--37221236	54	3.4	54	89	0	244	26	21	17	35	1.95
37221073--37221232	81	2.0	81	86	2	223	25	20	16	37	1.93
37221220--37221377	27	5.9	26	81	10	151	31	10	19	38	1.86
37221221--37221429	54	3.9	54	80	5	192	30	10	19	40	1.84
37221236--37221429	81	2.4	81	79	3	212	31	9	18	40	1.83
37221236--37221419	27	6.8	27	79	2	163	30	9	19	40	1.84
37221394--37221758	54	6.8	54	88	0	253	40	8	21	29	1.83
37221431--37221758	27	12.1	27	90	0	485	41	8	21	28	1.82
37223963--37224045	44	2.0	44	83	7	109	25	15	27	31	1.96
37228969--37229101	40	3.3	40	86	4	153	25	25	21	27	2.00
37236186--37236263	36	2.1	37	86	6	106	25	30	17	25	1.97
37236376--37236792	45	9.1	47	85	8	540	27	30	9	32	1.88
37240147--37240316	39	4.2	40	72	14	109	25	25	22	25	2.00
37240152--37240316	81	2.0	80	79	11	176	26	25	21	26	2.00
37240658--37240736	29	2.7	29	86	5	106	27	32	15	24	1.95
37240718--37240821	43	2.4	45	91	4	169	27	34	13	24	1.93
37242670--37242747	36	2.1	37	90	2	122	25	30	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37242915--37243289	47	8.0	47	97	2	702	30	29	8	32	1.87
37242915--37243289	96	4.0	94	96	2	702	30	29	8	32	1.87
37247207--37247598	40	9.8	40	89	2	590	25	28	22	23	1.99
37248867--37249080	37	5.9	37	85	6	296	26	32	17	23	1.97
37248908--37249044	68	2.0	68	94	2	240	24	34	17	24	1.96
37248885--37249080	105	1.9	105	94	0	347	25	33	18	22	1.97
37249225--37249500	47	5.9	46	86	9	143	25	31	11	31	1.91
37249289--37249722	47	9.1	47	88	4	643	26	31	12	29	1.93
37249289--37249722	145	3.0	145	93	1	723	26	31	12	29	1.93
37258575--37258823	68	3.8	65	77	8	186	28	17	30	23	1.97
37264641--37264708	28	2.4	28	90	4	102	27	11	26	33	1.91
37273781--37273881	48	2.1	50	83	3	125	27	19	23	28	1.99
37275018--37275094	36	2.2	35	92	2	127	35	7	24	32	1.84
37286246--37286306	22	2.8	22	76	16	72	70	1	19	8	1.21
37293334--37293455	33	3.7	33	91	0	199	34	13	24	27	1.93
37302233--37302266	3	11.7	3	93	6	61	67	0	0	32	0.91
37302237--37302265	14	2.1	14	100	0	58	65	0	0	34	0.93
37302234--37302266	17	1.9	17	100	0	66	66	0	0	33	0.92
37308408--37308612	40	5.1	40	90	1	313	25	26	23	23	2.00
37311658--37311880	40	5.6	39	80	7	216	25	21	27	25	1.99
37311738--37311915	79	2.2	80	82	3	200	25	21	28	24	1.99
37319606--37319828	40	5.6	39	80	7	216	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37319686--37319863	79	2.2	80	82	3	200	25	21	28	24	1.99
37328568--37328698	54	2.4	54	87	2	192	29	21	8	40	1.82
37328568--37328698	27	4.9	27	86	1	174	29	21	8	40	1.82
37328676--37328922	27	9.2	27	82	6	286	41	21	7	29	1.80
37328595--37328762	54	3.1	54	80	0	156	35	22	7	34	1.83
37328690--37328924	81	2.9	80	92	3	373	42	20	7	29	1.79
37328690--37328949	54	4.8	53	81	8	233	42	20	7	29	1.80
37329066--37329125	27	2.2	27	87	0	84	36	18	26	18	1.94
37329075--37329157	27	3.1	27	89	3	114	31	20	25	22	1.98
37329960--37330111	52	3.0	51	93	2	254	26	23	23	26	2.00
37329960--37330108	26	5.8	26	89	0	221	26	23	23	26	2.00
37330253--37330344	42	2.2	42	92	0	148	29	14	21	34	1.93
37330368--37330446	31	2.5	31	91	0	131	30	16	25	27	1.97
37342832--37342878	22	2.1	22	85	14	62	40	10	8	40	1.70
37344588--37344690	37	2.8	37	96	0	188	24	32	21	22	1.98
37344734--37345058	48	6.8	48	92	0	533	31	28	6	33	1.82
37344734--37345058	144	2.3	144	97	0	605	31	28	6	33	1.82
37348108--37348425	40	7.9	40	89	0	465	25	29	21	23	1.99
37350484--37350855	48	7.8	48	93	0	593	31	27	6	34	1.82
37361710--37361768	24	2.5	24	78	10	59	1	30	1	66	1.12
37367687--37367857	43	4.0	43	81	6	186	26	14	23	34	1.94
37371054--37371100	16	2.9	16	87	9	69	42	25	0	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37371267--37371478	117	1.8	118	91	3	356	22	8	23	45	1.80
37371975--37372211	41	5.8	41	80	0	224	36	15	26	21	1.93
37372006--37372066	21	3.0	20	67	13	52	34	11	27	26	1.91
37372440--37372486	24	2.0	24	100	0	94	46	21	4	27	1.69
37373990--37374059	35	2.0	35	100	0	140	22	14	17	45	1.84
37374942--37375078	51	2.8	51	80	8	146	32	29	16	22	1.95
37375013--37375146	43	3.1	43	78	6	146	32	29	15	22	1.95
37375013--37375169	43	3.7	43	79	3	138	32	28	17	22	1.96
37375641--37375697	30	1.9	30	85	7	80	24	28	7	40	1.81
37378020--37378150	46	2.8	48	77	12	155	23	18	27	30	1.98
37381070--37381138	15	4.6	15	83	0	84	11	17	13	57	1.64
37381061--37381148	30	3.0	30	81	8	99	10	17	15	56	1.66
37383531--37383706	46	3.8	46	78	12	198	20	21	28	28	1.98
37383527--37383698	93	1.8	93	92	0	290	20	22	29	27	1.98
37385807--37385845	21	1.9	20	85	15	53	41	20	5	33	1.74
37385854--37385905	21	2.2	24	80	16	65	44	19	7	28	1.78
37396537--37396583	23	2.0	23	91	0	76	36	25	6	31	1.81
37396592--37396817	41	5.6	41	82	2	242	35	12	26	24	1.91
37396592--37396825	81	2.9	80	81	4	263	36	12	26	24	1.92
37397650--37397754	50	2.1	51	90	1	167	28	10	24	36	1.89
37403785--37403944	78	2.1	78	95	0	284	36	20	4	38	1.73
37409157--37409214	22	2.7	21	76	15	64	22	1	3	72	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37409167--37409198	7	4.4	7	96	4	55	25	0	0	75	0.81
37410715--37410744	11	2.7	11	100	0	60	10	0	6	83	0.81
37411743--37411782	20	2.0	20	90	0	62	45	7	12	35	1.70
37415119--37415190	23	3.1	23	91	0	117	23	9	27	38	1.86
37416733--37416816	43	2.0	43	90	0	132	19	17	32	30	1.95
37419745--37419803	16	3.6	16	82	8	66	22	5	37	35	1.76
37422798--37422927	64	2.0	64	89	2	199	39	19	16	25	1.91
37430052--37430197	27	5.4	27	83	0	175	35	17	20	26	1.94
37430052--37430197	54	2.7	54	84	3	204	35	17	20	26	1.94
37432379--37432416	10	3.8	10	86	13	60	0	15	2	81	0.80
37432377--37432418	15	2.9	14	85	7	57	0	16	2	80	0.81
37432377--37432415	20	2.0	20	94	0	69	0	17	2	79	0.84
37436232--37436277	20	2.3	20	100	0	92	8	21	39	30	1.84
37442197--37442374	6	28.8	6	71	16	123	48	13	18	19	1.81
37442192--37442324	37	3.6	37	77	7	137	48	15	17	18	1.82
37442202--37442374	31	5.6	31	72	15	142	47	13	18	19	1.82
37442192--37442311	25	4.8	25	73	13	97	48	15	17	19	1.81
37442208--37442373	62	2.7	62	91	0	251	48	13	18	19	1.81
37442208--37442374	25	6.7	25	75	8	98	47	13	18	19	1.82
37442493--37442544	27	2.0	26	88	3	77	36	21	25	17	1.94
37442477--37442630	67	2.3	67	95	0	272	30	21	28	19	1.97
37442874--37442960	27	3.2	27	88	0	120	22	19	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37448024--37448126	30	3.5	30	71	6	93	27	24	16	32	1.96
37451188--37451300	50	2.4	49	82	10	137	26	30	19	23	1.98
37453709--37453768	29	2.1	29	90	0	93	41	28	0	30	1.56
37453715--37453762	15	3.3	15	73	5	53	43	25	0	31	1.55
37455436--37455469	13	2.6	13	95	0	59	26	5	8	58	1.51
37458383--37458431	18	2.7	19	79	17	59	34	12	8	44	1.71
37474839--37475063	40	5.7	40	82	6	233	25	28	21	25	1.99
37474995--37475072	40	1.9	41	82	10	97	26	28	20	24	1.99
37476763--37476792	12	2.5	12	88	0	51	23	50	13	13	1.77
37480583--37480609	5	5.4	5	100	0	54	81	0	18	0	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325