genome.fa.s3.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  170  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55093551--55093798	133	1.9	130	84	11	330	31	11	18	38	1.87
55094507--55094547	18	2.2	20	86	8	59	65	9	0	24	1.22
55096383--55096468	31	2.7	32	83	10	95	52	3	5	38	1.43
55096496--55096538	9	4.8	9	80	11	52	53	0	0	46	1.00
55100519--55100600	43	1.9	43	84	0	110	19	19	31	29	1.96
55106864--55106977	48	2.4	48	85	2	151	27	22	14	35	1.93
55113188--55113215	5	5.6	5	100	0	56	82	0	0	17	0.68
55114100--55114165	25	2.6	25	78	4	71	24	19	24	31	1.98
55115890--55115950	24	2.5	24	86	5	79	34	29	16	19	1.94
55120064--55120567	47	10.6	49	93	2	802	29	29	8	32	1.87
55120064--55120567	192	2.6	192	94	1	863	29	29	8	32	1.87
55123797--55124018	48	4.7	48	76	10	208	27	23	20	27	1.99
55130158--55130272	48	2.4	47	85	5	133	25	23	24	26	2.00
55134089--55134183	41	2.3	41	96	0	172	14	43	23	18	1.87
55135165--55135321	46	3.4	46	81	9	144	21	28	19	30	1.98
55137853--55137980	39	3.3	39	89	0	202	21	26	21	31	1.98
55141714--55141804	45	2.0	45	97	0	173	38	15	9	36	1.81
55148364--55148550	40	4.7	40	85	4	254	25	21	27	25	1.99
55148364--55148583	39	5.6	40	84	4	252	26	21	27	24	1.99
55151580--55151747	40	4.2	40	81	4	97	25	27	23	23	2.00
55151603--55151747	40	3.6	40	84	4	184	24	26	24	25	2.00
55159337--55159502	40	4.2	39	79	6	138	25	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55159360--55159502	40	3.6	38	83	6	160	23	25	24	25	2.00
55160261--55160308	13	3.8	13	75	5	53	58	25	0	16	1.38
55160261--55160311	25	2.0	25	100	0	102	56	23	0	19	1.42
55172662--55172914	40	6.4	40	89	5	349	26	28	22	22	1.99
55180420--55180667	77	3.2	78	86	5	308	26	26	22	23	2.00
55180420--55180670	39	6.5	40	85	8	297	26	26	23	23	2.00
55184593--55184770	40	4.5	40	86	2	234	25	27	23	23	2.00
55192246--55192503	40	6.5	40	91	2	378	24	28	24	22	2.00
55194994--55195069	39	1.9	40	91	2	127	22	23	28	25	1.99
55195051--55195097	24	2.0	24	95	0	85	27	17	19	36	1.93
55194990--55195177	103	1.8	104	90	3	308	26	21	24	27	1.99
55195012--55195137	64	2.0	63	89	4	191	26	20	23	29	1.99
55195075--55195201	40	3.2	40	94	0	227	25	22	25	26	2.00
55195075--55195234	40	4.0	40	86	5	209	26	21	25	26	2.00
55195075--55195234	80	2.0	79	89	6	243	26	21	25	26	2.00
55198493--55198619	46	2.8	43	81	9	130	22	26	22	29	1.99
55204253--55204307	27	2.1	27	83	10	69	21	21	16	40	1.91
55204433--55204486	24	2.3	23	84	9	65	18	25	22	33	1.97
55209423--55209522	52	1.9	53	89	2	157	33	20	7	40	1.79
55221751--55221858	54	2.0	54	100	0	216	37	18	7	37	1.79
55222223--55222341	39	3.1	39	86	0	166	28	23	20	27	1.99
55225899--55225971	29	2.6	28	84	6	85	26	30	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55226009--55226164	40	3.9	40	93	2	253	26	28	23	21	1.99
55228219--55228337	39	3.1	39	87	0	157	29	23	19	27	1.98
55232038--55232079	21	2.0	21	95	0	75	35	14	26	23	1.93
55238465--55238510	22	2.1	22	84	4	58	15	28	30	26	1.96
55240578--55240894	29	10.9	29	75	6	86	23	25	14	35	1.93
55240680--55240894	29	7.4	29	77	8	179	23	26	13	35	1.93
55240621--55240894	115	2.4	116	81	4	311	22	26	14	36	1.93
55241370--55241411	18	2.3	19	80	12	52	52	11	0	35	1.38
55248343--55248565	40	5.7	40	85	7	287	24	21	27	25	1.99
55248343--55248565	78	2.8	79	85	6	283	24	21	27	25	1.99
55248343--55248598	78	3.3	79	83	7	238	25	21	27	25	1.99
55399804--55400013	40	5.3	39	84	5	210	29	26	20	23	1.99
55412618--55412783	46	3.6	46	75	13	162	29	19	28	22	1.98
55412615--55412825	93	2.3	90	84	9	250	28	18	29	23	1.97
55420345--55420404	27	2.3	26	82	2	66	35	20	21	23	1.96
55421111--55421255	27	5.3	27	81	7	177	21	21	21	35	1.96
55421115--55421249	54	2.5	54	92	1	218	21	22	21	34	1.97
55421210--55421420	27	7.9	27	76	12	111	28	10	22	37	1.88
55421119--55421281	54	3.0	54	83	5	134	23	21	20	33	1.97
55421129--55421281	81	1.9	81	81	5	184	22	19	22	35	1.96
55421289--55421440	54	2.8	54	77	9	157	29	9	23	38	1.86
55421291--55421440	27	5.6	27	83	4	117	29	9	22	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55421291--55421440	81	1.9	81	82	2	194	29	9	22	38	1.85
55443661--55443705	20	2.2	20	84	7	56	44	2	13	40	1.56
55444954--55445000	24	2.0	24	82	0	58	6	6	27	59	1.46
55447905--55447931	12	2.2	12	100	0	54	51	7	0	40	1.30
55448378--55448475	27	3.5	28	90	2	135	26	13	28	31	1.94
55448406--55448488	27	3.0	27	87	5	96	30	12	25	32	1.92
55456175--55456201	12	2.2	12	100	0	54	51	7	0	40	1.30
55456648--55456745	27	3.5	28	90	2	135	26	13	28	31	1.94
55456676--55456758	27	3.0	27	87	5	96	30	12	25	32	1.92
55463878--55463976	46	2.2	46	96	0	180	41	5	12	41	1.64
55463882--55463954	23	3.2	23	66	33	66	38	4	13	43	1.63
55472470--55472500	14	2.2	14	94	0	53	32	32	25	9	1.88
55481884--55481943	29	2.1	29	100	0	120	48	0	23	28	1.51
55484119--55484256	40	3.3	40	84	6	161	30	26	16	26	1.97
55488485--55488659	46	3.8	45	78	10	183	22	20	26	29	1.99
55488481--55488653	93	1.9	93	90	0	274	23	20	27	28	1.99
55508812--55508892	40	2.0	40	80	4	92	38	16	25	19	1.92
55508866--55508904	20	2.0	20	84	0	51	43	20	25	10	1.83
55509823--55509856	5	6.8	5	100	0	68	20	0	0	79	0.73
55512567--55512617	16	3.3	15	76	10	57	35	15	1	47	1.57
55514264--55514426	45	3.7	45	74	8	174	20	18	30	30	1.97
55523228--55523443	107	2.0	107	95	0	387	30	20	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55526594--55526679	43	2.0	43	84	13	115	25	18	27	27	1.98
55533107--55533425	27	11.8	27	79	3	295	39	19	9	31	1.83
55533107--55533425	81	3.9	81	80	0	325	39	19	9	31	1.83
55533501--55533660	27	5.9	27	86	0	203	34	17	20	28	1.95
55533496--55533658	54	3.0	54	90	0	247	34	15	20	29	1.94
55533501--55533659	81	2.0	81	87	0	228	34	16	20	28	1.95
55533863--55533932	25	2.8	25	86	4	88	27	22	24	25	2.00
55533863--55533945	25	3.4	25	79	14	68	30	20	24	25	1.99
55536699--55536883	50	3.7	49	81	3	226	30	25	17	25	1.98
55536701--55536884	101	1.8	99	89	2	287	29	25	17	26	1.98
55537111--55537162	26	2.0	26	84	0	68	42	13	5	38	1.68
55542451--55542626	50	3.5	49	82	4	183	31	25	17	26	1.97
55542451--55542634	101	1.8	99	84	4	253	30	25	17	26	1.98
55542658--55542820	81	2.0	81	95	0	290	28	22	11	37	1.88
55542941--55542994	27	2.0	27	85	0	72	38	14	7	38	1.75
55545775--55545856	34	2.4	35	80	8	89	25	25	19	29	1.99
55551678--55551801	27	4.6	27	83	4	142	41	20	8	29	1.82
55551698--55551817	54	2.2	54	81	0	141	41	18	8	31	1.80
55551842--55551926	27	3.1	27	83	6	118	32	16	20	30	1.94
55552540--55552641	27	3.8	27	79	5	107	21	23	18	36	1.95
55552763--55552910	6	24.0	6	73	17	108	21	17	12	47	1.81
55552763--55552879	37	3.2	37	87	0	171	22	16	12	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55552834--55552904	25	2.8	25	86	0	97	19	19	14	46	1.84
55552835--55552934	25	3.8	25	75	14	83	21	19	12	48	1.80
55552794--55552934	31	4.5	31	76	13	146	20	17	12	48	1.80
55554857--55554952	27	3.6	27	85	4	104	44	17	7	30	1.76
55554882--55555034	27	5.7	27	81	3	155	40	20	8	30	1.82
55555075--55555159	27	3.1	27	80	6	100	32	16	20	30	1.94
55555140--55555203	27	2.4	27	74	10	67	21	17	23	37	1.94
55555548--55555612	22	3.0	22	77	8	69	20	24	23	32	1.98
55555771--55555878	27	4.0	27	83	5	130	18	23	21	37	1.95
55555771--55555878	54	2.0	53	85	1	144	18	23	21	37	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325