genome.fa.s3.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  166  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53794429--53794646	40	5.5	40	90	2	316	25	27	23	23	2.00
53797418--53797538	24	5.2	23	79	14	117	32	18	22	27	1.97
53797427--53797529	46	2.2	45	80	13	113	32	19	21	27	1.97
53797416--53797539	23	5.4	22	77	16	101	33	17	21	27	1.96
53802830--53802855	4	6.5	4	100	0	52	23	0	0	76	0.78
53803637--53803671	16	2.2	16	89	0	52	51	20	20	8	1.73
53803893--53803958	29	2.3	29	97	2	125	24	15	27	33	1.95
53808152--53808250	37	2.7	37	93	0	162	25	31	19	24	1.98
53808395--53808791	48	8.3	48	95	0	695	31	26	6	35	1.82
53811290--53811412	27	4.6	27	75	6	106	37	24	8	29	1.86
53812078--53812129	27	2.0	26	84	3	68	17	26	21	34	1.95
53812144--53812180	18	2.1	18	89	0	56	16	32	27	24	1.96
53813652--53813966	27	11.7	27	86	2	409	39	19	8	33	1.81
53813652--53814037	54	7.1	54	83	2	434	39	19	8	32	1.82
53813652--53814037	81	4.8	81	84	3	409	39	19	8	32	1.82
53813652--53814037	27	14.3	26	77	12	221	39	19	8	32	1.82
53814058--53814467	27	15.2	27	81	5	427	34	18	21	25	1.96
53814067--53814469	81	5.0	80	86	4	506	34	18	21	25	1.96
53814895--53814959	22	3.0	22	82	8	87	20	23	20	36	1.95
53815118--53815219	27	3.8	26	84	5	114	20	23	19	36	1.95
53817456--53817568	24	4.9	24	69	12	76	31	18	21	28	1.97
53820795--53820828	17	2.0	17	88	11	52	58	0	2	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53826822--53826890	33	2.1	33	97	0	129	20	17	24	37	1.93
53828624--53828787	51	3.2	52	82	11	200	29	28	12	28	1.93
53828624--53828787	49	3.2	52	84	10	200	29	28	12	28	1.93
53838076--53838253	51	3.5	51	85	4	227	26	29	15	28	1.96
53841277--53841389	43	2.7	42	80	2	136	29	15	25	29	1.96
53841442--53841466	12	2.1	12	100	0	50	44	16	24	16	1.86
53844473--53844629	43	3.7	43	77	9	160	24	16	26	32	1.96
53859393--53859436	18	2.4	18	85	7	54	45	15	18	20	1.85
53859770--53859940	27	6.3	27	82	1	173	44	16	13	25	1.84
53859770--53859940	54	3.2	54	81	5	202	44	16	13	25	1.84
53862332--53862417	46	1.9	45	83	4	111	32	29	17	20	1.96
53862829--53862888	30	2.0	30	86	0	84	30	25	6	38	1.81
53867000--53867181	40	4.6	40	86	4	226	25	28	21	23	1.99
53869342--53869444	47	2.2	47	94	0	179	29	29	8	33	1.87
53885408--53885445	20	1.9	20	88	0	58	36	10	21	31	1.87
53890750--53891174	47	9.1	47	93	1	674	32	9	29	28	1.88
53890750--53891174	187	2.3	187	91	0	672	32	9	29	28	1.88
53890750--53891174	140	3.0	141	91	1	683	32	9	29	28	1.88
53891292--53891370	37	2.1	37	88	4	115	25	18	30	25	1.98
53897817--53897931	9	12.6	9	69	24	64	33	3	0	62	1.12
53897812--53897981	20	8.3	20	73	18	104	32	4	0	62	1.18
53897811--53897976	29	5.5	31	66	23	81	31	4	0	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53897823--53897976	39	3.7	41	74	22	137	32	4	0	62	1.20
53897901--53897978	24	3.3	22	76	15	68	32	3	1	62	1.21
53898271--53898319	14	3.8	13	82	15	66	44	0	0	55	0.99
53910210--53911100	205	4.4	205	92	0	1469	30	18	20	29	1.97
53910210--53911100	409	2.2	410	92	0	1469	30	18	20	29	1.97
53912760--53912876	32	3.6	31	74	20	107	33	2	0	64	1.08
53912764--53912923	23	7.1	22	72	19	73	31	3	0	63	1.16
53912766--53912920	8	18.6	9	66	22	72	32	3	0	63	1.17
53912772--53912923	39	3.8	41	73	20	142	32	3	0	63	1.18
53912772--53912925	20	7.8	20	72	19	87	32	3	0	62	1.18
53912805--53912866	17	3.7	17	77	18	67	35	3	0	61	1.12
53913218--53913266	24	2.0	24	84	7	64	44	0	0	55	0.99
53913218--53913266	14	3.8	13	82	15	66	44	0	0	55	0.99
53913231--53913272	12	3.5	12	78	12	50	45	2	0	52	1.13
53913307--53913353	17	2.7	18	83	6	62	25	4	0	70	1.05
53913313--53913355	19	2.3	19	88	8	61	27	4	0	67	1.10
53915587--53915624	20	1.9	20	88	0	58	36	10	21	31	1.87
53915670--53915739	25	2.8	25	97	0	131	24	25	25	24	2.00
53915670--53915764	50	1.9	50	80	8	113	26	24	25	24	2.00
53919193--53919363	93	1.8	93	91	0	279	28	28	21	22	1.99
53919188--53919360	46	3.7	46	75	13	183	28	27	21	22	1.99
53921281--53921336	15	3.7	15	86	9	87	60	10	16	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53924300--53924471	46	3.7	46	74	13	181	28	27	21	22	1.99
53924305--53924475	93	1.8	93	92	0	288	28	28	21	21	1.99
53929720--53929773	27	2.0	27	96	0	99	37	1	3	57	1.27
53931741--53931975	39	6.0	38	90	3	308	30	28	22	18	1.97
53931758--53931975	117	1.8	119	89	3	343	29	27	22	19	1.98
53946706--53946738	17	1.9	17	100	0	66	42	12	9	36	1.74
53948514--53948560	23	2.0	24	83	8	60	40	25	0	34	1.56
53949509--53949563	22	2.5	21	82	8	74	43	12	0	43	1.42
53953636--53953814	46	3.8	47	78	9	170	23	29	19	27	1.98
53953631--53953814	94	2.0	93	83	6	237	23	28	20	27	1.99
53957944--53958072	41	3.1	41	87	2	170	45	0	15	37	1.52
53957988--53958044	13	4.2	13	75	16	53	57	0	10	31	1.32
53958001--53958057	28	2.0	28	86	0	78	50	0	12	36	1.40
53960783--53960875	34	2.8	33	75	6	91	36	16	24	22	1.94
53968005--53968107	43	2.4	43	82	4	129	29	18	25	27	1.98
53969149--53969215	33	2.1	31	83	10	82	35	25	17	20	1.95
53970774--53970856	27	3.0	27	83	1	94	22	20	18	38	1.93
53970980--53971095	6	18.8	6	71	15	85	19	21	11	47	1.80
53970980--53971083	31	3.4	31	74	15	106	20	22	11	46	1.82
53971002--53971095	37	2.5	37	85	0	134	19	22	11	46	1.81
53970980--53971047	25	2.7	25	93	0	109	19	20	13	47	1.82
53977246--53977391	40	3.7	40	83	7	172	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53977246--53977424	80	2.2	80	80	8	188	26	21	26	25	2.00
53978572--53978620	25	1.9	26	88	12	75	32	2	0	65	1.04
53978563--53978636	35	2.1	35	87	5	105	29	2	0	67	1.04
53978998--53979086	21	4.1	21	84	5	90	53	10	23	12	1.68
53978998--53979066	21	3.3	21	87	2	95	55	8	24	11	1.64
53986080--53986258	80	2.2	80	80	8	188	25	20	26	26	1.99
53986080--53986225	40	3.6	41	82	9	176	23	21	27	27	1.99
53990211--53990253	21	2.1	20	86	4	59	32	0	20	46	1.51
53991026--53991080	27	2.0	27	96	0	101	32	5	25	36	1.79
53993192--53993273	27	3.0	27	76	7	85	31	21	25	20	1.98
53993379--53993443	28	2.3	28	89	0	94	33	9	24	32	1.87
53994473--53994505	12	2.6	13	85	9	50	45	0	45	9	1.35
53998660--53998773	43	2.7	42	79	5	131	29	17	24	28	1.97
53999629--53999719	45	2.0	45	93	0	155	14	26	28	30	1.95
54007240--54007358	47	2.5	47	97	0	220	29	28	16	25	1.97
54010550--54011644	365	3.0	365	98	0	2109	31	22	14	31	1.94
54015721--54015909	50	3.8	49	83	5	211	25	19	26	28	1.98
54018918--54018969	15	3.5	15	73	7	52	11	13	13	61	1.57
54021112--54021299	49	3.8	49	80	6	193	25	19	27	28	1.98
54023605--54023701	47	2.1	47	92	3	160	26	20	22	29	1.99
54023598--54023702	24	4.4	24	90	7	160	25	21	21	30	1.99
54023760--54023816	9	5.9	9	73	15	51	35	21	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54023748--54023818	20	3.5	20	94	0	124	32	21	11	35	1.89
54023753--54023807	11	5.4	11	70	16	55	30	20	12	36	1.90
54027651--54027980	49	7.0	42	94	2	264	29	28	8	33	1.87
54027584--54027994	47	8.6	49	92	2	626	28	29	8	33	1.86
54027584--54027994	145	2.9	145	93	1	677	28	29	8	33	1.86
54027899--54027993	49	2.1	42	76	22	104	29	28	8	33	1.86
54035961--54036057	47	2.1	47	92	3	160	26	20	22	29	1.99
54035954--54036058	24	4.4	24	90	7	160	25	21	21	30	1.99
54036116--54036172	9	5.9	9	73	15	51	35	21	8	35	1.84
54036104--54036174	20	3.5	20	94	0	124	32	21	11	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325