Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  144  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46466010--46466040
16
1.9
16
93
0
53
41
0
22
35
1.54
46467050--46467250
55
3.7
54
79
9
205
34
17
25
21
1.95
46467053--46467250
108
1.8
110
89
4
312
34
17
26
21
1.96
46467492--46467522
16
1.9
16
93
0
53
41
0
22
35
1.54
46468578--46468737
55
3.0
54
80
7
200
35
18
25
21
1.95
46468535--46468732
108
1.8
110
87
4
303
34
18
25
21
1.96
46468974--46469004
16
1.9
16
93
0
53
41
0
22
35
1.54
46473591--46473649
23
2.6
23
89
7
86
28
30
23
16
1.97
46476473--46476580
39
2.7
40
84
8
157
25
22
27
25
2.00
46476479--46476613
39
3.4
40
81
10
145
26
22
27
23
1.99
46483566--46483713
79
1.9
80
91
4
246
25
22
27
24
2.00
46483566--46483713
40
3.7
40
90
5
246
25
22
27
24
2.00
46483574--46483746
79
2.2
79
82
6
190
27
21
26
24
1.99
46488823--46488887
33
2.0
33
96
0
121
32
15
23
29
1.95
46490364--46490413
24
2.0
25
81
11
59
10
32
2
56
1.44
46499066--46499108
6
7.2
6
79
10
52
30
6
0
62
1.21
46500539--46500578
19
2.1
19
86
9
55
30
12
7
50
1.68
46504694--46504737
23
1.9
23
90
0
70
15
0
29
54
1.42
46504851--46504940
19
4.8
19
82
10
114
37
1
18
42
1.58
46504851--46504940
39
2.5
35
83
7
108
37
1
18
42
1.58
46505467--46505721
126
2.0
126
89
1
386
36
18
17
27
1.93
46508739--46508773
17
2.1
17
94
0
61
42
8
28
20
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46509371--46509396
7
3.7
7
100
0
52
57
15
0
26
1.38
46510373--46510506
48
2.8
47
81
8
139
50
5
9
34
1.58
46510640--46510715
11
6.9
11
74
5
55
42
1
18
38
1.59
46512005--46512051
23
2.0
24
84
12
62
72
2
6
19
1.17
46512237--46512302
30
2.2
31
78
8
73
33
1
4
60
1.26
46516036--46516087
12
4.1
12
75
9
50
21
1
1
75
1.00
46522367--46522492
30
4.0
30
83
9
144
26
26
19
26
1.99
46526048--46526077
6
4.8
6
95
4
51
30
0
0
70
0.88
46526172--46526251
35
2.3
35
86
4
108
21
21
18
38
1.93
46526186--46526272
35
2.5
35
77
7
95
21
26
13
37
1.91
46527778--46527827
19
2.7
18
84
9
64
24
4
2
70
1.15
46527721--46527827
28
3.8
27
74
16
76
28
3
1
66
1.19
46535169--46535218
3
16.7
3
100
0
100
34
0
0
66
0.92
46536043--46536475
116
3.8
116
76
8
440
16
17
17
48
1.81
46536068--46536475
226
1.8
225
80
3
498
16
17
17
48
1.82
46542394--46542437
21
2.2
20
83
4
52
15
15
22
45
1.85
46543636--46543705
31
2.3
31
80
5
79
25
14
17
42
1.86
46545797--46545838
21
2.0
21
95
0
75
21
16
14
47
1.82
46546090--46546177
25
3.6
24
76
10
72
20
22
21
35
1.96
46546718--46546759
14
3.0
14
96
0
75
38
19
14
28
1.90
46551263--46551287
11
2.3
11
100
0
50
44
24
0
32
1.54
46552536--46552570
13
2.6
14
86
4
54
71
0
8
20
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46557046--46557212
35
4.8
35
93
0
255
37
24
12
25
1.91
46558713--46558747
16
2.2
16
94
0
61
25
25
5
42
1.77
46573633--46573706
37
2.0
37
100
0
148
40
16
16
27
1.89
46576672--46576851
40
4.6
40
82
2
105
23
26
24
25
2.00
46576707--46576851
40
3.6
40
85
4
193
23
26
24
25
2.00
46584706--46584873
40
4.2
40
83
4
106
25
27
23
23
2.00
46584729--46584873
40
3.6
40
85
4
193
23
26
24
25
2.00
46589774--46589912
52
2.6
53
85
2
190
26
23
14
35
1.93
46594847--46595135
41
7.0
41
81
4
264
37
27
16
17
1.92
46594928--46595135
83
2.5
82
86
3
292
38
27
15
17
1.90
46597515--46597636
43
2.8
42
76
14
115
33
22
17
26
1.96
46598889--46598930
21
2.0
21
90
0
66
26
21
26
26
1.99
46600962--46600992
15
2.1
15
100
0
62
25
12
19
41
1.87
46603518--46603549
3
10.7
3
100
0
64
34
0
0
65
0.93
46604043--46604085
22
2.0
22
85
0
59
51
6
2
39
1.42
46603984--46604147
88
1.9
88
81
8
199
37
14
6
42
1.71
46604637--46604676
21
2.0
21
90
5
64
55
2
0
42
1.13
46604737--46604778
20
2.1
20
83
16
52
64
0
9
26
1.24
46607054--46607095
22
1.9
22
85
9
59
47
2
0
50
1.14
46607836--46608080
117
2.1
119
86
3
352
24
22
28
24
1.99
46608687--46608742
20
2.6
22
72
13
53
30
8
7
53
1.59
46613185--46613220
14
2.6
14
95
0
63
30
27
5
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46620234--46620280
24
2.0
24
87
8
69
63
2
6
27
1.30
46624508--46624546
14
2.8
14
96
0
69
58
10
7
23
1.56
46627765--46627827
29
2.1
29
80
13
67
42
9
3
44
1.52
46629781--46629900
48
2.5
48
86
2
163
28
22
14
35
1.93
46651551--46651575
6
4.2
6
100
0
50
0
0
52
48
1.00
46653786--46653837
26
2.0
26
96
0
95
7
34
21
36
1.82
46655757--46655793
15
2.4
16
86
13
60
56
0
0
43
0.99
46656133--46656193
21
2.9
21
73
11
61
32
1
4
60
1.28
46658468--46658529
25
2.5
25
81
0
79
45
19
17
17
1.86
46658470--46658566
50
1.9
50
81
4
115
39
17
23
19
1.92
46660562--46660619
20
3.0
20
76
16
59
34
1
1
62
1.16
46660565--46660619
19
2.9
19
79
15
60
32
1
1
63
1.15
46660631--46660667
17
2.1
17
90
5
56
54
5
0
40
1.24
46660637--46660674
17
2.2
18
95
4
69
47
5
2
44
1.39
46668875--46668899
12
2.1
12
100
0
50
16
32
28
24
1.96
46671054--46671135
38
2.1
40
82
8
98
28
21
24
25
1.99
46674436--46674511
9
8.4
9
88
0
107
43
23
9
23
1.82
46675483--46675804
40
8.1
40
81
5
337
44
25
16
13
1.84
46675483--46675804
80
4.0
80
83
1
405
44
25
16
13
1.84
46675483--46675804
120
2.7
120
79
8
375
44
25
16
13
1.84
46691181--46691359
40
4.6
38
82
8
175
24
21
27
26
1.99
46691178--46691357
77
2.3
80
81
8
217
24
22
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46691229--46691392
79
2.1
77
81
10
192
25
20
26
26
1.99
46701616--46701672
22
2.6
22
91
0
96
22
7
17
52
1.68
46703622--46703651
12
2.5
12
94
0
51
13
23
3
60
1.48
46707225--46707399
46
3.8
46
78
15
198
29
29
20
21
1.98
46707233--46707404
93
1.8
93
92
0
290
28
30
20
20
1.98
46711276--46711390
43
2.7
42
75
11
135
24
20
24
31
1.98
46712145--46712189
24
1.9
23
82
13
56
31
4
24
40
1.75
46716042--46716090
25
2.0
25
100
0
98
30
8
4
57
1.47
46717309--46717346
17
2.4
16
86
8
51
31
26
28
13
1.93
46726683--46726777
42
2.3
42
83
3
111
24
26
31
17
1.97
46728644--46728670
14
1.9
14
100
0
54
44
0
25
29
1.54
46730121--46730246
38
3.3
38
94
2
200
20
21
24
33
1.97
46732571--46732717
41
3.6
41
84
1
206
27
28
23
20
1.99
46732571--46732719
81
1.8
81
86
0
217
26
28
23
21
1.99
46740184--46740371
41
4.6
41
86
1
270
28
28
22
20
1.98
46742203--46742288
27
3.1
29
80
5
88
32
24
13
29
1.94
46742204--46742266
29
2.2
28
85
2
81
26
25
17
30
1.97
46743764--46743795
16
2.0
16
100
0
64
12
6
31
50
1.65
46751022--46751719
84
8.1
83
79
10
475
44
10
11
33
1.75
46751022--46751769
88
8.7
87
81
7
542
43
10
11
33
1.76
46751296--46751768
89
5.4
88
80
8
339
42
10
11
34
1.77
46752523--46752569
20
2.4
20
82
3
60
48
8
8
34
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46756046--46756092
24
2.0
24
100
0
94
42
8
0
48
1.33
46756319--46756384
33
2.0
33
100
0
132
27
18
24
30
1.98
46757011--46757064
3
18.3
3
77
11
58
62
0
35
1
1.06
46757916--46757953
19
2.0
20
85
15
53
36
10
0
52
1.36
46758443--46758483
18
2.3
18
87
8
57
29
21
0
48
1.50
46758592--46758685
39
2.4
38
80
5
100
27
26
20
25
1.99
46759687--46759732
25
1.9
25
86
8
69
10
13
4
71
1.27
46761152--46761289
43
3.2
43
91
1
224
43
19
7
28
1.79
46762928--46762976
15
3.2
15
88
2
71
36
38
6
18
1.76
46763261--46763431
62
2.8
62
93
0
297
48
13
11
26
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325