genome.fa.s3.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  150  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48181801--48181907	54	2.0	54	85	3	144	16	24	21	37	1.94
48183642--48183811	46	3.7	45	74	16	168	22	18	28	30	1.97
48185979--48186118	27	5.2	27	75	11	126	20	23	22	34	1.97
48185979--48186118	54	2.6	54	91	2	228	20	23	22	34	1.97
48195381--48195410	10	3.0	10	90	0	51	13	30	0	56	1.37
48200636--48200687	27	1.9	27	96	0	95	11	32	15	40	1.83
48202842--48203012	93	1.8	93	92	0	288	28	29	20	21	1.98
48202837--48203009	46	3.8	45	78	10	188	30	28	19	21	1.98
48203433--48203492	30	2.0	30	86	0	84	30	25	6	38	1.81
48209525--48209694	92	1.8	92	96	0	313	28	28	21	21	1.99
48209520--48209691	46	3.7	46	80	11	217	29	27	21	21	1.99
48209522--48209710	46	4.1	46	73	17	151	28	28	21	21	1.99
48210108--48210167	30	2.0	30	90	0	93	30	25	8	36	1.85
48215164--48215330	46	3.6	45	77	9	149	28	18	28	23	1.98
48222824--48222992	45	3.7	44	78	14	148	28	19	28	22	1.98
48234387--48234665	50	5.6	50	75	6	226	30	24	17	28	1.97
48234386--48234661	150	1.8	149	83	4	367	30	24	16	27	1.97
48239658--48239752	30	3.2	30	83	0	127	17	37	21	23	1.94
48239674--48239773	30	3.3	30	80	2	85	17	34	25	24	1.96
48241835--48242107	101	2.8	97	78	8	266	30	25	17	26	1.97
48241835--48242107	50	5.5	50	78	8	274	30	25	17	26	1.97
48245668--48245780	6	18.3	6	70	18	72	47	15	16	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48245679--48245780	31	3.3	31	89	5	152	48	15	16	19	1.82
48245900--48245985	27	3.2	26	77	11	93	38	20	20	19	1.94
48245900--48246007	54	2.0	53	82	5	128	37	20	21	20	1.94
48246598--48246791	27	7.2	27	84	4	223	27	20	18	34	1.96
48246571--48247095	54	10.0	54	82	7	600	25	20	19	34	1.96
48246588--48247103	81	6.5	81	87	5	725	25	20	20	34	1.96
48246749--48246834	43	2.0	43	90	0	136	24	15	22	38	1.92
48246792--48247103	27	11.6	27	90	0	500	24	20	20	34	1.96
48247132--48247215	27	3.1	27	89	0	132	40	7	21	30	1.80
48247225--48247327	27	3.8	27	81	7	120	33	9	17	39	1.82
48247236--48247347	27	4.1	27	78	8	113	31	8	20	40	1.81
48249475--48249554	6	13.0	6	70	15	56	48	16	16	18	1.81
48249474--48249554	31	2.6	31	90	0	126	49	16	16	18	1.80
48249674--48249781	27	4.0	26	84	5	135	37	22	21	18	1.94
48249940--48249997	22	2.6	22	86	0	71	34	22	24	18	1.96
48250014--48250054	20	2.0	20	90	0	64	39	26	17	17	1.91
48250367--48250693	27	12.1	27	85	0	456	24	20	21	33	1.97
48250684--48250741	27	2.2	26	87	3	80	31	8	22	37	1.84
48250720--48250808	27	3.3	27	85	3	126	39	8	19	32	1.83
48250831--48250941	27	4.2	26	79	9	125	31	8	20	39	1.82
48253069--48253148	6	13.0	6	70	15	56	48	16	16	18	1.81
48253068--48253148	31	2.6	31	90	0	126	49	16	16	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48253267--48253374	27	4.0	26	84	5	135	37	22	21	18	1.94
48253533--48253590	22	2.6	22	86	0	71	34	22	24	18	1.96
48253607--48253647	20	2.0	20	90	0	64	39	26	17	17	1.91
48253959--48254345	27	14.3	27	85	0	513	25	20	20	33	1.97
48254330--48254388	27	2.2	27	84	6	75	30	6	25	37	1.82
48253963--48254345	81	4.7	81	91	0	577	25	20	20	33	1.97
48254376--48254457	27	3.0	27	92	0	146	39	8	23	29	1.84
48254467--48254588	27	4.6	27	80	8	115	29	9	20	40	1.83
48256716--48256789	6	12.0	6	70	16	53	47	17	16	18	1.83
48256692--48256786	25	3.6	25	73	15	73	46	13	18	21	1.83
48256719--48256789	31	2.3	31	97	0	133	47	16	15	19	1.82
48256909--48257016	27	4.0	25	78	12	99	38	22	21	17	1.93
48256909--48257016	54	2.0	54	82	8	132	38	22	21	17	1.93
48257030--48257105	32	2.4	31	80	6	80	35	25	18	21	1.95
48257175--48257230	22	2.5	22	85	0	67	33	23	25	17	1.96
48257249--48257289	20	2.0	20	90	0	64	39	26	17	17	1.91
48257602--48257934	27	12.3	27	86	1	461	25	20	20	33	1.97
48257919--48257977	27	2.2	27	90	0	91	32	8	22	37	1.84
48257957--48258044	27	3.3	27	91	0	149	37	7	22	31	1.83
48257938--48258046	54	2.0	54	85	0	146	38	9	21	31	1.84
48258056--48258165	27	4.1	27	78	9	118	30	10	22	36	1.87
48258069--48258174	53	2.0	54	81	9	128	31	9	23	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48258067--48258177	27	4.2	26	78	9	116	30	9	22	37	1.85
48265043--48265076	13	2.6	13	100	0	68	23	23	32	20	1.98
48271771--48271923	42	3.6	43	73	2	148	29	22	19	28	1.98
48271748--48271981	85	2.8	85	84	3	276	26	23	21	28	1.99
48271748--48271935	43	4.4	43	72	6	150	26	22	21	29	1.99
48275621--48275799	40	4.5	40	76	9	127	27	27	20	24	1.99
48275660--48275799	40	3.5	37	79	11	129	27	27	20	23	1.99
48275621--48275799	80	2.3	79	79	9	179	27	27	20	24	1.99
48283493--48283610	40	3.0	39	82	5	121	27	27	20	25	1.99
48283539--48283679	40	3.6	38	80	10	142	27	27	21	23	1.99
48286794--48286965	86	2.0	86	97	0	326	26	23	17	32	1.97
48286809--48286944	43	3.2	42	63	19	100	25	22	16	35	1.95
48290137--48290286	43	3.5	43	78	8	162	27	23	18	30	1.98
48290138--48290307	43	4.1	40	76	11	135	29	21	18	30	1.97
48290126--48290303	85	2.1	85	89	0	266	29	23	17	29	1.97
48292172--48292225	27	2.0	27	85	0	72	38	14	7	38	1.75
48295564--48295624	30	2.0	30	87	0	86	31	22	6	39	1.80
48297559--48297689	46	2.7	47	90	4	192	22	32	10	34	1.88
48297559--48297699	50	2.9	50	88	4	173	22	33	10	33	1.89
48297713--48297953	47	5.1	47	92	0	401	26	26	12	34	1.92
48297763--48297835	22	3.2	22	65	24	60	24	28	13	32	1.94
48301288--48301342	25	2.2	25	87	6	76	25	30	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48301506--48301702	40	4.9	40	90	0	295	25	30	22	20	1.98
48301502--48301704	80	2.5	80	95	0	352	26	30	22	20	1.98
48303178--48303350	46	3.8	46	96	0	310	22	32	10	34	1.88
48303374--48303614	47	5.1	47	95	0	437	25	28	12	34	1.92
48321254--48321316	26	2.5	26	94	2	110	26	15	11	46	1.80
48322013--48322045	14	2.2	16	89	10	52	18	12	0	69	1.18
48323750--48323927	27	6.6	27	79	3	115	28	28	16	26	1.97
48323750--48323927	54	3.3	55	80	10	204	28	28	16	26	1.97
48323771--48323926	82	1.9	81	85	3	215	28	28	16	26	1.97
48331868--48332045	27	6.6	27	79	3	115	28	28	16	26	1.97
48331868--48332045	54	3.3	55	80	10	204	28	28	16	26	1.97
48331889--48332044	82	1.9	81	85	3	215	28	28	16	26	1.97
48338994--48339052	27	2.2	27	87	3	84	38	6	20	33	1.79
48341313--48341468	6	25.3	6	70	17	79	48	17	16	17	1.82
48341327--48341468	31	4.6	31	89	0	194	47	18	16	17	1.82
48341600--48341673	27	2.8	26	87	2	94	37	21	22	17	1.94
48341612--48341673	26	2.3	27	88	2	90	37	24	24	14	1.93
48341832--48341895	22	2.9	22	77	9	67	35	23	20	20	1.96
48342323--48342544	27	8.3	27	87	2	295	25	22	19	32	1.97
48342565--48342815	27	9.3	27	80	1	234	31	9	20	38	1.85
48345567--48345657	46	2.0	46	86	0	128	27	31	6	34	1.83
48345674--48345749	22	3.3	22	66	28	59	23	27	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48345815--48345890	22	3.3	22	66	16	64	26	28	11	32	1.92
48345671--48346072	47	8.6	47	93	0	633	25	27	11	34	1.91
48345637--48346103	141	3.3	141	89	0	655	26	28	11	33	1.91
48347151--48347326	56	3.1	56	99	0	343	44	9	23	22	1.81
48348454--48348637	40	4.6	39	79	9	185	25	22	27	25	2.00
48348506--48348670	79	2.1	79	80	6	183	26	20	26	26	1.99
48352099--48352139	12	3.4	13	83	16	61	48	19	17	14	1.81
48352106--48352258	6	24.8	6	71	15	98	47	13	17	20	1.82
48352099--48352258	19	8.7	18	70	15	85	47	14	17	20	1.82
48352117--48352258	31	4.6	31	83	0	167	47	14	17	21	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325