genome.fa.s3.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  101  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32483432--32483568	40	3.4	40	83	0	166	25	19	23	31	1.98
32483555--32483608	28	1.9	28	96	0	99	27	16	25	29	1.97
32487653--32487830	27	6.6	27	83	3	205	26	15	28	29	1.96
32487654--32487809	82	1.9	81	88	3	233	26	15	28	29	1.96
32487650--32487830	82	2.2	81	83	2	229	27	15	27	29	1.96
32495825--32496002	27	6.6	27	83	3	205	26	15	28	29	1.96
32495826--32495981	82	1.9	81	88	3	233	26	15	28	29	1.96
32495822--32496002	82	2.2	81	83	2	229	27	15	27	29	1.96
32500999--32501057	23	2.6	23	100	0	118	13	28	33	23	1.93
32507262--32507390	40	3.2	40	81	4	118	25	15	23	35	1.94
32507375--32507435	28	2.2	28	84	0	77	27	11	29	31	1.92
32509552--32509719	43	3.9	43	75	7	171	20	15	33	30	1.94
32509520--32509655	42	3.2	42	74	6	139	17	16	35	30	1.92
32509520--32509771	85	2.9	84	84	7	297	20	15	32	31	1.94
32512736--32512881	43	3.4	42	78	9	143	29	26	19	25	1.98
32512814--32512911	41	2.4	42	82	8	128	30	28	14	26	1.95
32514415--32514517	28	3.7	28	77	0	116	25	15	33	25	1.95
32515773--32515806	18	1.9	18	88	5	52	41	11	17	29	1.85
32521083--32521175	41	2.3	40	83	9	109	25	17	9	47	1.78
32521107--32521189	41	2.0	41	100	0	166	25	12	14	48	1.78
32530749--32530801	26	2.0	26	100	0	106	24	7	22	45	1.78
32563109--32563202	42	2.2	43	84	5	120	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32565177--32565232	27	2.1	27	96	0	103	35	12	21	30	1.90
32566416--32566525	19	5.9	19	89	6	172	39	10	13	36	1.80
32571416--32571537	45	2.7	46	92	3	196	21	22	27	28	1.99
32578928--32579053	46	2.7	46	95	0	216	20	21	27	30	1.98
32583865--32583920	7	7.9	7	83	16	55	85	0	14	0	0.59
32583874--32583919	6	7.8	6	81	18	53	86	0	13	0	0.56
32583862--32583920	15	4.1	14	80	8	66	86	0	13	0	0.57
32583862--32583920	18	3.3	18	83	4	84	86	0	13	0	0.57
32584891--32585233	44	7.8	43	78	10	322	29	15	27	28	1.96
32584867--32585192	175	1.9	175	90	1	519	30	15	25	28	1.96
32584891--32585302	219	1.9	218	91	1	673	28	15	26	30	1.96
32585198--32585634	87	5.0	87	90	0	660	26	15	27	30	1.96
32584916--32585406	219	2.2	216	85	5	614	28	15	27	29	1.96
32585619--32585818	45	4.5	45	86	5	262	32	15	29	23	1.95
32585619--32585818	89	2.2	90	89	3	314	32	15	29	23	1.95
32585545--32585818	134	2.0	136	82	6	333	30	16	28	24	1.96
32586845--32586951	37	2.9	37	94	0	178	27	31	17	23	1.97
32587099--32587283	48	3.8	48	89	4	273	31	26	5	36	1.79
32587099--32587282	98	1.9	97	88	4	282	31	26	5	36	1.79
32587253--32587446	47	4.1	47	89	0	271	26	29	10	32	1.90
32587368--32587447	25	3.3	25	68	16	69	32	27	6	33	1.82
32590085--32590192	37	2.9	37	95	0	189	25	30	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590338--32590522	48	3.8	48	89	4	282	31	26	6	35	1.82
32590338--32590521	98	1.9	97	89	4	291	30	26	6	35	1.82
32590492--32590685	47	4.1	47	87	0	271	27	28	10	32	1.90
32590445--32590685	94	2.5	93	85	4	288	28	28	9	33	1.88
32593227--32593353	19	6.9	19	88	8	192	40	11	12	36	1.79
32593219--32593360	36	4.0	37	80	15	165	40	11	12	35	1.79
32593227--32593360	54	2.5	55	90	4	220	40	10	13	35	1.79
32595207--32595365	86	1.9	85	84	6	214	25	16	25	32	1.97
32595199--32595371	43	4.0	43	77	8	190	24	16	26	32	1.96
32602482--32602514	8	4.1	8	96	0	57	51	0	21	27	1.48
32604620--32604708	44	2.0	44	100	0	178	22	17	29	30	1.97
32605598--32605704	33	3.2	33	77	0	106	40	29	11	18	1.86
32609833--32609868	19	1.9	18	88	5	54	11	5	5	77	1.10
32612687--32612798	55	2.0	55	91	0	179	27	17	16	37	1.92
32614912--32614950	21	2.0	20	85	10	53	53	2	10	33	1.48
32615027--32615146	20	5.9	20	75	9	100	14	26	20	38	1.91
32615026--32615125	40	2.5	41	80	8	116	12	27	21	40	1.88
32615024--32615146	60	2.0	62	82	6	153	14	26	21	38	1.92
32618789--32618866	37	2.1	37	81	9	88	21	23	12	42	1.87
32618811--32618882	37	1.9	38	88	2	110	20	22	11	45	1.82
32619887--32619933	19	2.3	19	85	10	58	17	38	34	10	1.84
32620059--32620130	36	2.0	36	100	0	144	19	30	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32621886--32622151	49	5.6	49	71	10	160	25	28	19	25	1.99
32622034--32622154	46	2.6	46	82	5	145	23	28	20	27	1.99
32627997--32628054	21	2.8	20	77	10	64	67	10	1	20	1.29
32632210--32632255	24	2.0	23	82	4	56	56	10	17	15	1.67
32632306--32632331	9	2.9	9	100	0	52	80	19	0	0	0.71
32634720--32634828	43	2.6	42	85	1	128	21	18	22	37	1.94
32646996--32647021	9	2.9	9	100	0	52	80	19	0	0	0.71
32647493--32647572	36	2.2	36	95	2	144	53	10	8	27	1.63
32649306--32649403	42	2.3	43	87	5	137	31	26	22	19	1.98
32649383--32649474	44	2.1	44	93	0	157	27	16	15	41	1.88
32649389--32649490	44	2.3	44	89	3	152	32	18	13	35	1.90
32649540--32649632	47	2.0	47	97	0	177	50	24	5	19	1.68
32650241--32650269	13	2.1	14	93	6	51	55	10	0	34	1.34
32653530--32653929	84	4.8	84	80	9	354	30	21	11	37	1.88
32653615--32653929	161	2.0	161	87	3	456	29	22	11	36	1.89
32653607--32653947	83	4.2	82	80	11	312	30	23	11	34	1.90
32654098--32654133	18	1.9	18	88	5	54	50	2	8	38	1.47
32654549--32654655	7	15.0	7	69	11	56	38	38	1	21	1.64
32654518--32654655	14	9.6	15	68	14	85	36	39	2	22	1.66
32654586--32654648	29	2.2	29	82	5	74	34	42	1	20	1.62
32654555--32654654	43	2.3	43	83	6	132	37	39	2	22	1.65
32654718--32654765	7	6.9	7	75	0	51	45	33	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32654718--32654765	14	3.4	14	85	0	69	45	33	0	20	1.52
32654727--32654771	14	3.2	14	83	0	63	48	26	0	24	1.51
32655036--32655132	41	2.4	42	77	6	103	36	17	19	26	1.94
32655024--32655239	40	5.4	39	72	8	139	29	19	19	31	1.97
32655585--32655631	22	2.2	21	85	7	60	57	2	0	40	1.11
32655833--32655918	45	1.9	45	82	0	109	48	3	5	41	1.44
32657005--32657031	12	2.2	12	100	0	54	66	25	0	7	1.17
32661873--32661952	30	2.7	30	84	0	106	38	23	8	28	1.85
32662881--32662947	34	2.0	34	90	0	107	35	23	14	25	1.94
32669979--32670046	19	3.6	19	77	15	61	44	1	1	52	1.19
32670005--32670038	10	3.2	10	91	8	50	41	0	0	58	0.98
32669919--32670046	9	13.6	9	68	18	57	45	1	0	52	1.15
32670356--32670405	3	16.7	3	95	0	91	68	2	0	30	1.01
32681213--32681364	46	3.2	47	79	11	152	24	30	17	26	1.97
32688130--32688192	31	2.0	31	93	0	108	39	14	26	19	1.90
32689003--32689055	19	2.8	19	81	16	58	66	1	1	30	1.13
32689023--32689122	19	5.3	19	75	9	80	66	2	1	31	1.10
32689022--32689122	9	10.7	10	69	24	60	65	1	0	31	1.10
32689022--32689115	27	3.4	28	80	16	97	64	2	1	31	1.12
32689025--32689123	28	3.5	28	80	14	107	65	2	1	31	1.10
32689304--32689356	19	2.7	20	85	5	81	33	3	1	60	1.26
32689402--32689473	19	3.7	19	73	12	65	34	4	1	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32689391--32689464	20	3.7	20	75	8	62	33	4	1	60	1.24
32689410--32689465	19	2.9	19	82	12	78	39	5	0	55	1.23
32689410--32689473	19	3.3	18	79	16	67	37	4	0	57	1.19
32689441--32689508	29	2.3	29	85	5	93	35	1	2	60	1.21
32689452--32689516	29	2.2	30	83	8	80	35	1	3	60	1.22
32690363--32690396	17	1.9	18	88	5	52	29	38	0	32	1.58
32690360--32690473	55	2.1	54	85	6	149	22	32	0	43	1.59
32691202--32691249	16	3.1	15	90	6	69	64	2	2	31	1.16
32691198--32691253	24	2.3	24	81	6	69	66	1	1	30	1.12
32691198--32691249	8	6.5	8	82	8	61	65	1	1	30	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325