genome.fa.s3.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  282  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92166334--92166389	25	2.2	25	93	6	96	30	3	17	48	1.65
92167022--92167060	18	2.2	18	85	0	51	17	20	0	61	1.34
92177564--92177727	42	3.9	42	89	1	231	28	15	25	29	1.96
92183847--92183911	31	2.1	32	83	11	82	32	24	12	30	1.92
92184158--92184225	25	2.8	25	90	2	102	27	23	26	22	1.99
92196881--92196924	22	2.0	23	82	13	56	70	9	9	11	1.34
92196998--92197058	6	9.5	6	81	13	50	78	4	6	9	1.07
92198676--92198769	43	2.2	43	84	3	118	32	27	13	25	1.94
92204858--92205031	46	3.7	46	81	4	197	27	20	29	22	1.98
92204861--92205216	140	2.5	142	78	13	351	28	19	29	22	1.98
92204902--92205218	46	6.7	47	69	14	131	27	19	30	22	1.98
92210707--92210804	43	2.3	43	90	0	151	32	18	19	29	1.96
92212400--92212481	41	2.0	41	100	0	164	21	21	19	36	1.95
92222688--92222994	140	2.2	139	81	6	352	28	19	29	23	1.98
92222731--92222996	47	5.7	47	74	12	210	27	19	30	22	1.98
92225211--92225389	37	4.7	39	82	10	201	23	22	29	25	1.99
92225208--92225422	76	2.8	77	80	10	255	24	22	28	24	1.99
92233255--92233475	116	1.9	117	88	2	338	23	23	28	25	1.99
92233255--92233498	40	6.2	39	87	7	302	23	22	28	25	1.99
92235609--92235667	27	2.2	27	100	0	118	37	13	10	38	1.79
92243364--92243402	18	2.2	18	95	0	69	23	5	7	64	1.40
92249929--92249982	28	2.0	28	85	3	74	31	27	1	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92255677--92255710	14	2.4	14	90	0	50	64	11	0	23	1.26
92260096--92260318	46	4.8	46	74	12	163	22	30	21	25	1.99
92262365--92262456	48	1.9	48	86	0	130	20	16	31	31	1.95
92268119--92268316	55	3.7	53	80	9	204	20	25	18	35	1.95
92275714--92275846	53	2.5	55	80	9	159	21	23	18	36	1.95
92275655--92275910	55	4.9	51	72	15	175	21	24	16	37	1.93
92277177--92277375	80	2.5	80	78	3	213	19	25	16	39	1.92
92277177--92277417	40	6.0	39	76	4	167	20	26	15	38	1.92
92284433--92284564	56	2.4	55	89	1	201	32	24	14	28	1.94
92289099--92289150	25	2.1	25	82	3	61	23	17	25	34	1.96
92289355--92289526	27	6.4	27	80	0	175	23	19	18	38	1.93
92289360--92289524	54	3.1	53	89	1	240	23	19	18	39	1.92
92289506--92289660	27	5.8	27	87	4	190	29	10	21	38	1.88
92289506--92289712	80	2.6	81	81	4	224	28	9	21	40	1.85
92289704--92289887	80	2.3	81	88	0	280	41	8	21	29	1.82
92289705--92289887	27	6.8	27	87	1	242	40	8	21	29	1.82
92289694--92289932	107	2.2	107	81	1	289	38	8	21	31	1.83
92292207--92292245	16	2.4	16	91	0	69	46	23	23	7	1.78
92292475--92292574	29	3.5	29	86	1	130	27	17	30	26	1.97
92292460--92292574	29	4.0	29	83	6	128	28	15	28	26	1.96
92292475--92292583	57	1.9	58	86	1	157	27	16	30	25	1.97
92302132--92302176	23	2.0	23	90	0	72	35	8	26	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92312860--92313151	129	2.2	132	84	7	364	24	41	0	33	1.58
92313124--92313182	30	2.0	30	90	6	93	20	45	0	33	1.51
92316785--92316813	15	1.9	15	100	0	58	68	6	20	3	1.27
92318585--92318850	46	5.7	45	77	15	208	27	18	30	23	1.97
92319082--92319176	47	2.0	47	97	0	181	26	8	17	47	1.76
92322707--92322748	22	1.9	22	85	0	57	11	35	26	26	1.91
92353123--92353176	16	3.6	16	67	23	53	38	3	18	38	1.69
92353114--92353173	29	2.1	29	96	0	111	35	5	16	43	1.70
92354271--92354395	50	2.5	50	98	0	241	40	3	17	38	1.66
92355329--92355390	31	2.1	31	87	6	92	38	0	9	51	1.35
92355607--92355665	29	2.0	31	83	12	79	45	11	3	38	1.58
92358489--92358523	12	2.9	12	95	0	61	48	45	0	5	1.26
92358492--92358523	2	16.0	2	93	0	55	50	46	0	3	1.17
92359771--92359816	14	3.5	13	77	19	51	63	0	2	34	1.07
92360079--92360139	25	2.3	28	75	8	65	32	1	6	59	1.33
92362269--92362606	131	2.6	131	79	4	330	41	10	9	38	1.73
92362461--92362690	126	1.8	127	81	0	291	39	9	10	40	1.72
92372028--92372070	15	2.9	14	80	13	50	34	18	0	46	1.50
92372268--92372424	57	2.8	57	82	3	172	31	22	15	30	1.95
92382274--92382434	43	3.8	42	77	7	155	24	15	26	32	1.95
92382272--92382393	41	3.0	41	75	9	122	24	16	25	33	1.96
92382272--92382434	84	2.0	83	82	3	202	24	15	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92383447--92383484	16	2.4	16	95	0	67	39	0	34	26	1.57
92384702--92384836	39	3.4	38	74	10	103	27	28	20	23	1.99
92385027--92385051	10	2.5	10	100	0	50	40	8	0	52	1.31
92392522--92392546	10	2.5	10	100	0	50	40	8	0	52	1.31
92406809--92406911	34	3.0	34	88	1	134	28	23	22	26	1.99
92406912--92406952	18	2.3	18	87	8	57	41	21	14	21	1.89
92407212--92407262	23	2.2	24	86	10	70	41	17	13	27	1.87
92407296--92407486	27	7.3	27	80	8	223	23	18	16	41	1.89
92407342--92407489	49	2.9	49	89	7	199	22	18	16	42	1.89
92407296--92407486	81	2.4	79	86	4	253	23	18	16	41	1.89
92407363--92407503	76	1.9	76	86	3	203	26	16	17	39	1.91
92407342--92407527	103	1.8	103	80	6	225	25	17	17	39	1.91
92410045--92410093	9	5.7	9	73	26	52	30	18	12	38	1.87
92410046--92410104	17	3.5	17	97	0	109	30	18	10	40	1.84
92411457--92411506	24	2.0	25	81	11	59	8	36	2	54	1.42
92416012--92416088	3	25.7	3	100	0	154	33	0	0	66	0.92
92417727--92417818	6	15.3	6	96	0	148	13	4	0	82	0.81
92426908--92426982	39	1.9	39	91	0	123	30	30	20	18	1.96
92437712--92437862	33	4.5	33	85	1	194	15	9	35	40	1.79
92441460--92441501	22	1.9	22	85	9	59	59	0	2	38	1.10
92449122--92449209	39	2.3	39	86	7	117	38	1	4	55	1.28
92449122--92449215	38	2.5	39	83	10	108	38	1	4	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92452079--92452108	16	1.9	15	93	6	51	86	0	13	0	0.57
92452674--92452728	27	2.0	28	82	3	67	56	5	0	38	1.23
92458840--92458869	13	2.3	13	94	0	51	56	6	3	33	1.42
92461379--92461426	22	2.4	22	86	13	68	33	0	4	62	1.14
92462378--92462407	16	1.9	16	93	6	53	46	10	0	43	1.37
92466422--92466453	17	1.9	16	93	6	55	84	3	0	12	0.74
92467197--92467286	21	4.4	20	68	6	65	58	11	7	22	1.57
92467270--92467389	21	5.4	23	71	17	85	54	13	7	25	1.65
92467208--92467423	45	5.0	43	78	7	215	56	12	8	22	1.63
92467209--92467423	87	2.5	85	82	6	254	56	12	8	22	1.62
92468822--92468880	19	3.4	18	79	11	52	57	1	0	40	1.09
92474200--92474237	18	2.1	18	85	14	51	52	0	0	47	1.00
92478093--92478253	47	3.5	46	83	8	179	27	19	29	22	1.98
92482176--92482213	13	2.9	13	96	0	67	44	13	7	34	1.72
92483095--92483146	26	2.0	26	100	0	104	34	19	11	34	1.88
92483640--92483677	15	2.6	15	91	4	60	60	10	13	15	1.59
92504803--92504827	13	1.9	13	100	0	50	24	28	48	0	1.52
92505341--92505463	21	5.9	21	71	1	86	43	17	22	16	1.88
92505335--92505527	42	4.6	42	78	5	174	44	17	22	16	1.87
92505352--92505511	84	1.9	84	83	5	207	44	17	20	17	1.87
92514993--92515156	40	4.2	40	92	3	244	25	21	26	26	2.00
92514993--92515156	79	2.1	79	88	4	242	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92516724--92516847	47	2.7	48	82	9	143	23	30	18	27	1.98
92522557--92522676	24	4.8	25	92	2	172	25	25	23	25	2.00
92522567--92522689	24	4.9	26	87	8	102	26	25	22	26	2.00
92522896--92522979	31	2.7	31	87	1	125	38	17	20	23	1.93
92528885--92529154	46	5.8	48	77	8	220	23	28	18	29	1.98
92528933--92529153	94	2.4	92	84	7	259	23	30	18	28	1.98
92528885--92529148	140	1.9	141	82	5	338	23	28	18	29	1.98
92539230--92539396	73	2.3	73	95	2	300	31	17	26	24	1.97
92539361--92539435	26	2.9	25	76	5	78	34	21	25	18	1.96
92553160--92553247	27	3.3	27	84	4	81	28	15	18	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325