Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  308  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99985790--99985934
30
4.8
30
83
5
143
26
46
4
22
1.70
99985790--99985934
60
2.4
60
82
4
159
26
46
4
22
1.70
99986502--99986560
25
2.4
25
82
0
73
33
5
1
59
1.29
99986500--99986613
29
4.0
29
67
14
76
32
7
3
57
1.43
99986584--99986642
25
2.5
24
78
10
68
33
8
6
50
1.59
99986600--99986648
25
2.0
25
91
0
80
34
8
6
51
1.57
99986804--99986851
16
3.1
15
81
6
51
35
2
2
60
1.20
99989602--99989685
26
3.2
26
94
0
141
34
23
5
35
1.80
99993866--99993918
26
2.0
27
85
7
74
24
15
22
37
1.92
99995395--99995478
26
3.2
26
94
0
141
34
23
5
35
1.80
99998851--99998894
22
2.0
22
91
8
72
27
4
0
68
1.09
99999096--99999141
22
2.1
22
83
0
56
34
2
2
60
1.21
99999163--99999259
7
13.3
7
72
21
67
37
6
1
55
1.32
99999164--99999274
20
5.6
19
77
18
111
36
5
0
57
1.28
99999153--99999223
29
2.6
26
80
12
72
36
2
1
59
1.21
99999242--99999299
18
3.4
17
81
6
64
36
3
1
58
1.25
99999164--99999302
20
7.2
18
75
15
95
35
5
1
57
1.31
99999566--99999623
17
3.6
17
69
21
52
34
1
1
62
1.16
100011426--100011937
205
2.5
205
90
1
785
32
17
21
28
1.96
100013779--100013912
20
6.8
19
75
19
116
35
5
0
57
1.29
100013768--100013838
29
2.6
26
80
12
72
36
2
1
59
1.21
100013778--100013891
13
8.0
14
69
25
71
35
5
0
57
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100013875--100013914
18
2.3
18
86
4
55
35
5
0
60
1.19
100016907--100017014
53
2.1
52
89
1
162
32
28
13
25
1.94
100018830--100019030
102
2.0
102
100
0
402
31
13
16
37
1.88
100020103--100020164
22
2.8
23
87
4
85
12
0
53
33
1.39
100020658--100021737
206
5.2
206
95
0
1908
28
23
18
29
1.98
100034632--100034692
22
2.8
22
87
5
88
13
0
52
34
1.40
100051639--100051692
23
2.5
22
75
13
60
57
5
5
31
1.45
100051655--100051740
25
3.7
24
79
10
81
55
5
6
31
1.50
100051759--100051891
25
5.6
25
71
13
93
58
2
3
35
1.28
100051756--100051806
14
3.9
13
73
17
52
64
0
3
31
1.11
100051753--100051886
52
2.8
46
73
18
112
60
2
3
33
1.27
100051820--100051891
22
3.2
22
74
16
60
58
2
2
36
1.27
100052376--100052546
30
5.7
30
91
1
281
22
3
48
25
1.66
100052376--100052546
59
2.9
59
96
1
306
22
3
48
25
1.66
100053260--100053527
77
3.5
77
89
3
389
33
20
18
27
1.96
100053632--100053666
17
2.1
17
89
5
54
65
5
17
11
1.43
100053750--100054742
73
12.8
73
71
15
571
33
21
16
28
1.95
100053969--100054133
87
1.9
87
89
2
260
36
23
13
25
1.92
100053649--100054670
165
6.4
163
76
15
755
34
21
16
28
1.95
100054056--100054670
240
2.6
239
94
1
1072
33
21
17
28
1.96
100054440--100054467
14
2.0
14
100
0
56
57
7
21
14
1.61
100054455--100054742
145
2.0
148
86
2
411
32
21
17
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100063042--100063077
12
3.0
12
95
0
63
41
5
25
27
1.77
100064606--100064653
16
3.1
15
90
6
69
64
2
2
31
1.16
100064602--100064653
8
6.5
8
82
8
61
65
1
1
30
1.14
100064601--100064657
24
2.4
24
79
5
71
64
1
3
29
1.20
100064767--100064820
23
2.5
22
75
13
60
57
5
5
31
1.45
100064783--100064868
25
3.7
24
79
10
81
55
5
6
31
1.50
100064888--100065019
25
5.6
25
74
8
98
59
2
3
34
1.28
100064885--100064935
14
3.9
13
73
17
52
64
0
3
31
1.11
100065503--100065674
30
5.7
30
89
0
263
23
2
47
25
1.65
100065503--100065674
60
2.9
60
94
0
299
23
2
47
25
1.65
100067277--100067333
26
2.2
26
87
0
78
15
5
31
47
1.68
100067936--100068135
45
4.5
45
67
10
142
26
27
19
27
1.99
100068063--100068277
45
4.8
45
66
8
127
28
25
17
27
1.98
100067760--100068280
132
3.9
132
90
2
787
27
24
19
27
1.99
100068836--100068932
49
2.0
49
95
0
176
47
14
17
20
1.82
100074398--100074566
46
3.7
45
76
10
171
30
28
19
21
1.97
100074405--100074575
93
1.8
93
88
0
261
29
28
19
21
1.98
100075268--100075354
19
4.3
19
71
22
70
57
5
4
32
1.43
100076950--100078114
72
15.5
73
81
9
1101
32
19
16
30
1.95
100077296--100077322
14
1.9
14
100
0
54
62
7
14
14
1.51
100086377--100086412
12
3.0
12
95
0
63
41
5
25
27
1.77
100088157--100088193
14
2.6
15
83
12
51
64
5
2
27
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100088160--100088204
13
3.5
13
85
11
58
62
2
6
28
1.33
100093697--100093721
12
2.1
12
100
0
50
32
24
16
28
1.96
100096659--100097148
132
3.7
129
76
7
450
34
19
19
26
1.96
100098771--100098926
3
52.0
3
68
12
70
60
3
6
29
1.37
100099138--100099282
3
48.0
3
70
17
63
62
4
2
30
1.27
100099138--100099323
29
6.3
28
67
24
82
64
4
2
28
1.25
100099197--100099563
132
2.6
136
75
17
328
60
5
4
30
1.38
100099390--100099419
12
2.5
12
94
0
51
56
0
6
36
1.26
100099255--100099552
138
2.2
135
80
12
342
60
4
4
30
1.37
100099527--100099569
3
13.7
3
81
18
52
62
0
4
32
1.15
100100768--100100798
15
2.1
15
93
0
53
9
0
25
64
1.24
100102703--100102748
14
3.4
14
73
11
51
8
6
41
43
1.61
100102697--100102753
26
2.2
26
93
0
96
12
5
35
47
1.64
100111483--100111528
3
15.3
3
86
0
65
63
2
2
32
1.19
100112269--100112317
22
2.2
22
81
0
62
44
2
2
51
1.24
100112656--100112702
18
2.5
19
82
6
51
31
0
8
59
1.27
100116523--100116622
50
2.0
50
100
0
200
30
10
28
32
1.89
100117492--100117545
19
2.8
19
83
5
56
70
5
7
16
1.30
100117650--100117682
11
3.0
11
87
12
50
63
0
0
36
0.95
100117695--100117737
20
2.2
19
87
4
59
67
2
2
27
1.15
100117638--100117739
30
3.5
29
74
11
93
64
1
3
29
1.22
100117638--100117780
10
14.5
10
69
16
50
63
2
4
30
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100117992--100118063
17
3.9
17
73
12
63
31
1
1
65
1.10
100117972--100118063
28
3.3
28
78
14
84
28
1
3
67
1.13
100117999--100118060
20
3.3
19
74
19
58
30
1
1
66
1.11
100126049--100126104
20
2.8
20
86
0
76
10
26
41
21
1.86
100126678--100126707
15
2.0
15
100
0
60
20
20
6
53
1.67
100128437--100128470
16
2.1
16
100
0
68
29
17
11
41
1.85
100128437--100128478
16
2.6
16
92
0
57
26
19
9
45
1.80
100130289--100130336
16
3.1
15
90
6
69
64
2
2
31
1.16
100130285--100130340
24
2.3
24
81
6
69
66
1
1
30
1.12
100130285--100130336
8
6.5
8
82
8
61
65
1
1
30
1.14
100130540--100130599
28
2.2
27
84
3
75
56
3
5
35
1.37
100130481--100130699
25
9.0
25
73
12
136
55
4
5
34
1.43
100131228--100131418
30
6.4
30
91
0
310
23
3
47
26
1.68
100131198--100131418
60
3.7
60
91
0
343
23
3
46
26
1.68
100132165--100132214
14
3.6
14
81
7
57
64
4
12
20
1.43
100132194--100132417
76
3.0
73
81
7
272
33
21
16
27
1.95
100132424--100132451
14
2.0
14
100
0
56
57
7
21
14
1.61
100132343--100132527
91
2.1
88
85
5
255
37
18
17
26
1.93
100132439--100132893
73
5.9
73
73
11
349
34
21
16
27
1.95
100132186--100133561
238
5.7
239
81
11
1409
35
20
16
27
1.94
100132997--100133032
15
2.5
15
90
4
56
55
5
19
19
1.62
100133011--100133165
80
1.9
79
90
1
247
30
21
17
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100132938--100133495
168
3.4
164
76
10
525
33
20
17
28
1.95
100133170--100133198
14
2.1
14
100
0
58
65
6
13
13
1.45
100133276--100133561
76
3.9
73
82
9
350
33
19
15
31
1.93
100133265--100133583
147
2.1
149
83
10
395
34
19
15
30
1.93
100149618--100149653
12
3.0
12
95
0
63
41
5
25
27
1.77
100151188--100151228
7
5.6
7
91
8
64
65
2
0
31
1.05
100151181--100151228
23
2.1
23
92
7
80
66
2
0
31
1.03
100151177--100151235
8
7.5
8
84
7
68
66
1
1
30
1.12
100151177--100151246
31
2.3
30
76
13
72
65
1
1
31
1.10
100151389--100151480
25
3.7
25
75
11
82
54
5
8
31
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325