genome.fa.s3.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  127  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40648967--40649600	147	4.4	142	89	5	849	26	30	12	30	1.93
40648967--40649600	194	3.3	194	93	2	1065	26	30	12	30	1.93
40660447--40660494	25	1.9	25	91	0	78	35	25	14	25	1.94
40660531--40660593	20	3.2	20	91	8	110	34	12	19	33	1.89
40660646--40660727	24	3.4	24	88	5	103	29	19	23	28	1.98
40660647--40660737	24	3.8	25	81	11	84	28	20	24	26	1.99
40660935--40660998	31	2.1	31	90	0	101	35	15	23	25	1.94
40664083--40664140	29	2.0	30	82	3	73	41	0	37	20	1.53
40664268--40664300	9	3.7	9	84	15	50	42	24	9	24	1.83
40664872--40665011	66	2.1	63	83	8	181	22	28	27	21	1.99
40670621--40670713	42	2.2	43	84	1	125	37	24	12	24	1.91
40678029--40678178	75	2.0	75	98	0	291	32	24	5	38	1.78
40679867--40679899	16	2.2	16	89	10	52	30	9	21	39	1.84
40686225--40686270	20	2.2	21	88	3	67	19	19	21	39	1.93
40686232--40686279	21	2.3	20	92	3	78	16	16	22	43	1.87
40686967--40686994	10	2.8	10	100	0	56	35	21	10	32	1.88
40687637--40687668	12	2.7	12	95	0	55	28	18	18	34	1.95
40688282--40688311	15	1.9	16	93	6	53	0	16	0	83	0.65
40695423--40695479	29	2.0	28	89	3	87	29	24	21	24	1.99
40700345--40700483	68	2.0	68	97	0	260	32	9	15	43	1.78
40702238--40702310	30	2.4	29	82	6	83	42	8	17	31	1.79
40703621--40703659	18	2.2	17	86	13	53	7	7	2	82	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40704374--40704513	73	1.9	73	94	0	244	33	10	18	37	1.84
40708804--40708894	28	3.2	28	90	4	139	31	23	24	20	1.98
40709003--40709064	28	2.2	28	88	0	88	33	8	25	32	1.85
40718076--40718245	79	2.1	80	84	7	213	28	20	25	25	1.99
40718021--40718245	40	5.7	40	83	5	235	27	21	25	25	1.99
40718095--40718278	79	2.3	79	79	9	180	29	21	25	24	1.99
40732890--40733079	75	2.5	77	81	9	201	26	21	26	25	1.99
40732890--40733107	39	5.6	39	83	10	227	25	22	27	25	2.00
40732978--40733140	78	2.1	77	82	8	188	26	20	27	25	1.99
40734642--40734732	28	3.2	28	90	4	139	31	23	24	20	1.98
40734838--40734898	28	2.2	28	84	0	77	34	9	24	31	1.88
40739828--40739888	25	2.4	26	83	5	79	68	8	6	16	1.35
40739841--40739890	25	2.0	25	92	4	82	64	10	10	16	1.50
40741883--40742132	60	4.2	60	73	7	195	37	12	25	25	1.91
40741891--40742132	30	8.1	30	70	7	123	35	12	25	25	1.92
40745313--40745366	26	2.1	26	92	0	90	27	7	22	42	1.80
40749525--40749599	30	2.6	28	76	4	78	42	10	25	21	1.85
40749581--40749775	30	6.5	30	75	9	164	35	10	26	27	1.89
40749580--40749775	60	3.3	61	77	11	197	35	10	26	27	1.89
40749611--40749789	90	2.0	90	80	2	198	36	11	25	26	1.90
40756917--40757466	95	5.8	94	95	2	917	32	8	29	29	1.87
40756917--40757466	142	3.9	143	94	3	961	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40756917--40757466	47	11.6	47	93	3	917	32	8	29	29	1.87
40757584--40757728	37	3.9	37	91	0	227	23	20	31	24	1.98
40758989--40759491	40	12.8	40	91	2	763	24	20	28	26	1.99
40763166--40763669	48	10.6	48	89	5	737	33	8	29	28	1.86
40763166--40763669	143	3.5	143	92	4	806	33	8	29	28	1.86
40763166--40763669	95	5.3	94	91	4	757	33	8	29	28	1.86
40763789--40763930	37	3.9	37	88	6	202	22	20	31	25	1.98
40764917--40765087	46	3.7	46	76	12	172	23	19	26	29	1.98
40765305--40765342	18	2.1	19	85	14	53	34	0	23	42	1.55
40767051--40767096	19	2.4	19	76	20	51	65	8	2	23	1.32
40771812--40772178	50	7.6	49	75	10	265	22	28	19	28	1.98
40771763--40772189	95	4.4	98	78	6	424	23	28	19	28	1.98
40771763--40772176	145	2.8	143	76	9	399	23	28	19	28	1.98
40774244--40774454	48	4.5	48	73	11	134	27	24	19	28	1.99
40774203--40774411	89	2.3	90	78	6	217	26	24	19	29	1.99
40774335--40774602	48	5.6	48	76	7	195	27	27	19	26	1.99
40779637--40779687	20	2.7	19	82	14	54	41	0	21	37	1.54
40779832--40779864	17	1.9	17	88	11	50	48	0	15	36	1.45
40780893--40780956	13	4.9	13	86	0	83	29	6	25	39	1.80
40781186--40781233	19	2.5	19	77	9	53	50	2	2	45	1.25
40785450--40785475	7	3.7	7	100	0	52	15	53	0	30	1.42
40793511--40793547	17	2.2	17	90	4	58	59	5	5	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40794564--40794647	27	3.1	27	85	0	105	32	25	9	33	1.88
40794659--40794732	28	2.7	28	89	6	107	41	22	6	28	1.79
40794660--40794760	28	3.6	28	82	4	98	42	22	6	27	1.79
40794654--40795029	54	6.9	54	72	6	206	37	21	9	31	1.85
40794810--40795011	81	2.5	81	72	11	189	36	21	10	31	1.88
40794660--40795032	27	13.8	27	75	6	164	37	21	9	31	1.86
40795915--40796089	26	6.8	26	88	0	237	28	21	21	29	1.99
40795915--40796089	78	2.3	77	89	2	262	28	21	21	29	1.99
40796234--40796325	42	2.2	42	92	3	150	29	13	22	34	1.92
40796340--40796432	31	3.0	31	92	3	143	31	16	22	30	1.95
40796960--40797001	15	2.7	15	82	14	50	40	2	16	40	1.62
40798084--40798118	13	2.6	14	90	4	54	14	8	28	48	1.73
40802412--40802474	27	2.3	27	86	8	92	38	26	15	19	1.92
40804700--40804797	27	3.6	27	84	2	117	38	22	19	19	1.93
40806324--40806371	23	2.1	23	100	0	96	37	25	20	16	1.93
40806747--40806826	27	3.0	27	90	0	133	35	18	21	25	1.96
40806812--40807101	54	5.4	54	74	4	217	39	20	10	30	1.85
40806812--40807016	81	2.5	80	83	4	241	40	20	9	28	1.84
40806837--40807018	81	2.2	81	86	3	242	40	20	9	29	1.84
40806812--40807101	27	10.7	28	77	8	190	39	20	10	30	1.85
40807113--40807165	27	2.0	27	81	7	63	43	18	16	20	1.88
40807123--40807196	27	2.7	27	85	4	87	36	22	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40807337--40807416	27	3.0	27	83	7	74	21	20	21	37	1.94
40807359--40807432	27	2.7	27	85	0	94	17	20	22	39	1.92
40813510--40813540	16	1.9	16	100	0	62	38	9	6	45	1.63
40818505--40818551	19	2.5	19	77	19	53	63	8	2	25	1.34
40835969--40836283	55	5.8	54	83	7	363	22	24	17	35	1.95
40835979--40836274	108	2.7	108	91	0	475	22	24	18	35	1.96
40836263--40836383	47	2.6	47	95	0	215	26	23	14	36	1.92
40843219--40843352	42	3.1	42	82	10	146	35	26	14	23	1.93
40843183--40843352	43	4.0	43	77	13	172	34	27	15	23	1.95
40843240--40843351	44	2.6	44	87	6	158	33	28	15	22	1.94
40845147--40845188	13	3.5	12	81	12	50	76	0	19	4	0.96
40845147--40845185	20	1.9	21	89	5	62	76	0	17	5	0.96
40845201--40845246	19	2.5	18	80	13	58	69	0	30	0	0.89
40861025--40861153	48	2.7	48	89	1	179	28	15	23	32	1.95
40861127--40861203	38	2.0	38	92	0	127	28	15	25	29	1.96
40862674--40862725	25	2.1	25	100	0	104	17	11	23	48	1.79
40866201--40866356	43	3.6	42	80	6	170	25	17	25	31	1.97
40867263--40867476	27	7.9	27	73	4	144	40	21	7	31	1.80
40867345--40867561	27	8.0	27	77	6	141	41	19	8	31	1.81
40867579--40867652	27	2.7	27	76	12	71	37	20	20	21	1.94
40867592--40867656	27	2.4	27	82	5	78	35	18	24	21	1.96
40868464--40868533	25	2.8	25	86	0	95	28	24	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40868514--40868560	24	2.0	24	83	8	60	29	19	23	27	1.98
40883771--40883806	17	2.0	20	84	15	51	66	0	11	22	1.22
40885883--40885962	41	2.1	37	88	9	115	45	21	5	28	1.73
40886481--40886539	28	2.1	28	100	0	118	38	10	6	44	1.65
40887859--40887910	24	2.2	24	82	6	61	19	26	19	34	1.95
40887953--40888016	23	2.8	23	97	0	119	10	21	25	42	1.85
40888910--40888941	16	2.0	16	93	0	55	50	34	6	9	1.60
40890271--40890368	29	3.4	29	80	4	110	26	17	28	27	1.98
40894421--40894575	43	3.6	43	80	5	161	32	24	15	27	1.95
40897804--40897848	22	2.0	22	95	0	81	31	8	15	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325