genome.fa.s3.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  136  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43836891--43837070	89	2.0	90	94	1	317	25	12	15	46	1.80
43850735--43850777	17	2.7	15	80	13	50	51	20	13	13	1.76
43855126--43855250	44	2.7	45	81	7	135	31	26	15	27	1.96
43855169--43855744	50	11.5	50	73	5	426	31	24	17	25	1.97
43855169--43855744	101	5.7	99	77	5	437	31	24	17	25	1.97
43855118--43855502	151	2.6	150	87	3	539	31	25	17	25	1.97
43855428--43855744	150	2.1	151	91	1	512	30	25	17	25	1.97
43856371--43856427	30	1.9	30	88	0	87	28	28	5	38	1.78
43866372--43866691	48	6.7	48	85	2	421	27	30	17	24	1.97
43866405--43866692	96	3.0	96	93	1	488	27	29	18	24	1.98
43869945--43870018	37	2.0	37	100	0	148	29	21	16	32	1.95
43872002--43872045	23	1.9	23	100	0	88	56	13	9	20	1.64
43884142--43884748	300	2.0	300	97	0	1133	39	7	15	37	1.75
43887069--43887116	19	2.5	19	76	13	53	31	8	14	45	1.74
43903690--43903733	14	3.2	13	81	12	52	25	2	13	59	1.46
43907974--43908117	40	3.7	38	80	10	130	26	27	22	23	1.99
43915760--43915937	27	6.6	27	84	3	205	29	28	15	26	1.96
43915781--43915936	82	1.9	81	88	3	233	29	28	15	26	1.96
43918288--43918391	49	2.1	51	83	3	131	49	7	16	26	1.73
43924309--43924359	23	2.4	21	87	9	68	29	0	49	21	1.50
43926428--43926478	20	2.6	21	76	14	56	52	0	1	45	1.12
43930836--43930874	13	2.7	14	85	14	53	25	0	30	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43935505--43935539	17	2.1	17	89	5	54	37	0	11	51	1.38
43937283--43937432	57	2.6	59	78	9	155	34	20	18	27	1.96
43940112--43940280	37	4.6	37	97	0	320	25	31	18	24	1.98
43940484--43940917	47	9.1	47	89	4	625	26	30	12	30	1.93
43940484--43940895	98	4.3	98	91	3	651	26	30	12	30	1.93
43940484--43940917	145	3.0	142	89	4	647	26	30	12	30	1.93
43946922--43947097	46	3.8	46	78	12	207	20	20	29	29	1.98
43946919--43947090	93	1.8	93	94	0	308	20	20	29	28	1.98
43949069--43949210	65	2.2	65	97	0	266	49	4	4	42	1.41
43950818--43950868	2	26.0	2	84	4	68	47	1	3	47	1.32
43951072--43951144	2	37.0	2	83	2	58	43	5	6	43	1.54
43951072--43951133	26	2.4	26	100	0	124	43	6	6	43	1.55
43965024--43965103	31	2.6	30	88	5	108	30	8	15	46	1.75
43983889--43983974	44	2.0	44	88	2	129	31	10	12	45	1.76
43997655--43997711	27	2.1	27	100	0	114	38	7	14	40	1.73
44005448--44005493	23	2.0	23	100	0	92	39	13	21	26	1.90
44017057--44017108	16	3.2	16	94	0	86	28	0	36	34	1.58
44017089--44017183	45	2.1	44	88	1	136	34	5	27	32	1.79
44017321--44017375	25	2.2	25	84	9	69	52	1	0	45	1.11
44020703--44020770	16	4.2	16	90	0	109	27	0	35	36	1.58
44021036--44021084	24	2.1	22	85	14	64	55	0	2	42	1.11
44021055--44021108	15	3.7	15	78	14	60	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44021015--44021253	41	6.2	40	67	24	133	53	2	1	41	1.26
44021005--44021138	17	8.0	16	67	21	62	54	0	1	43	1.14
44021054--44021111	13	4.3	13	81	14	64	56	0	0	43	0.99
44021065--44021127	26	2.5	25	82	10	83	60	1	0	38	1.07
44023572--44023600	14	2.1	14	100	0	58	34	6	44	13	1.71
44025717--44026031	47	6.6	47	97	1	567	32	8	28	30	1.86
44026147--44026225	37	2.1	37	90	0	122	24	18	31	25	1.98
44027894--44028098	103	2.0	104	95	0	367	40	6	18	35	1.76
44031087--44031149	29	2.1	30	97	2	119	34	11	9	44	1.73
44037545--44037578	16	2.1	16	88	0	50	35	20	2	41	1.68
44038072--44038152	26	3.1	26	92	0	144	33	11	3	51	1.55
44038386--44038424	14	2.9	14	88	3	62	0	25	0	74	0.82
44042943--44043130	18	10.1	18	67	13	94	37	15	12	34	1.86
44043304--44043450	45	3.3	45	88	4	228	40	21	19	19	1.92
44045000--44045049	5	10.2	5	95	4	93	62	0	0	38	0.96
44045005--44045092	24	3.5	25	76	14	92	57	2	1	38	1.18
44045069--44045097	8	3.6	8	100	0	58	62	0	0	37	0.96
44045007--44045095	19	4.7	19	70	23	64	58	2	1	38	1.18
44049068--44049197	52	2.5	51	83	2	163	33	25	14	26	1.95
44058096--44058202	55	2.0	55	94	1	189	45	8	8	37	1.65
44078461--44078507	21	2.2	21	100	0	94	25	4	31	38	1.75
44084624--44084944	171	1.9	170	82	4	405	42	18	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44086058--44086096	19	2.0	20	90	5	62	20	0	7	71	1.10
44086064--44086104	19	2.2	19	86	8	57	21	0	7	70	1.11
44086077--44086122	25	1.9	23	86	8	65	30	0	6	63	1.20
44086594--44086627	15	2.2	16	85	15	54	32	0	0	67	0.91
44086600--44086629	15	2.0	15	100	0	60	33	0	0	66	0.92
44086748--44086784	17	2.2	17	90	9	58	16	43	29	10	1.82
44087087--44087159	30	2.4	31	80	11	80	56	1	0	42	1.08
44091390--44091415	13	2.0	13	100	0	52	46	15	30	7	1.74
44100677--44100706	16	1.9	15	93	6	51	33	23	0	43	1.54
44100906--44101195	50	5.8	50	80	2	294	31	26	16	24	1.97
44100967--44101148	101	1.8	101	90	0	292	29	25	18	26	1.98
44100910--44101195	151	1.9	151	88	2	430	31	26	17	24	1.97
44104621--44104708	45	2.0	45	93	0	149	39	27	10	22	1.86
44106263--44106296	3	11.7	3	87	6	52	29	2	0	67	1.05
44106847--44106895	25	2.0	25	84	8	64	36	0	8	55	1.30
44110820--44110873	19	2.8	20	91	2	83	20	20	22	37	1.95
44111805--44111886	28	2.9	28	90	0	128	41	19	8	30	1.81
44114998--44115203	55	3.8	55	74	13	149	22	8	26	42	1.81
44115021--44115210	53	3.5	53	77	8	161	22	7	27	42	1.81
44117386--44117465	32	2.5	32	81	0	97	28	15	17	38	1.90
44117408--44117475	32	2.1	31	84	10	84	26	11	19	42	1.85
44123398--44123464	34	2.0	34	87	0	98	29	5	22	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44124632--44124689	20	2.8	20	82	12	55	25	3	24	46	1.68
44124649--44124689	20	2.0	20	86	9	57	24	2	24	48	1.63
44151908--44151965	30	1.9	30	86	6	82	25	31	24	18	1.98
44156320--44156523	102	2.0	102	98	0	390	27	5	23	43	1.77
44156894--44156951	27	2.1	28	87	3	82	20	15	15	48	1.81
44168690--44168853	42	3.9	42	74	7	134	30	24	16	28	1.96
44172508--44173112	48	12.7	47	75	9	478	28	17	28	25	1.98
44172508--44173117	96	6.4	96	79	8	541	28	17	28	25	1.98
44172511--44173112	144	4.2	143	84	5	673	28	17	28	26	1.97
44174330--44174379	21	2.4	21	96	0	91	14	26	32	28	1.94
44177397--44177564	48	3.5	48	81	3	196	26	14	32	26	1.95
44180061--44180111	21	2.4	21	76	0	57	31	35	13	19	1.91
44190930--44191136	53	3.8	53	76	6	148	21	24	17	36	1.94
44190942--44191136	55	3.6	53	76	7	151	20	24	18	36	1.95
44208629--44208687	29	2.0	29	93	0	100	38	15	15	30	1.88
44213113--44213226	56	2.0	56	91	3	185	23	0	12	63	1.34
44219385--44219561	27	6.6	27	71	10	94	28	27	15	28	1.96
44226596--44226773	27	6.6	27	75	6	119	29	26	16	28	1.97
44226596--44226773	54	3.3	54	74	12	150	29	26	16	28	1.97
44228389--44228582	22	9.0	22	76	11	136	34	20	23	22	1.97
44228411--44228582	44	3.9	44	76	7	188	34	20	21	23	1.96
44228414--44228583	88	1.9	88	87	7	247	34	21	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44228411--44228574	66	2.5	66	76	5	170	34	20	21	22	1.97
44234441--44234522	25	3.3	25	80	13	105	31	21	23	23	1.98
44236882--44236935	16	3.4	16	73	0	63	31	27	3	37	1.75
44240358--44240774	208	2.0	208	97	0	789	23	12	33	29	1.92
44248340--44248368	14	2.0	15	93	6	51	31	0	0	68	0.89
44249589--44249683	37	2.6	37	88	1	129	29	8	9	52	1.63
44250391--44250438	25	1.9	25	83	8	62	50	4	27	18	1.65
44252975--44253200	49	4.6	49	79	6	267	31	26	16	25	1.96
44252980--44253205	100	2.3	99	86	5	305	30	26	16	25	1.97
44253453--44253506	27	2.0	27	85	0	72	38	14	7	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325