genome.fa.s3.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  160  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51327635--51327797	86	1.9	85	83	3	211	32	23	15	28	1.95
51331245--51331289	23	1.9	24	82	13	58	48	20	4	26	1.68
51358517--51358554	20	1.9	20	89	10	60	28	0	2	68	1.03
51358620--51358676	20	2.9	19	75	12	62	36	1	5	56	1.32
51359338--51359395	18	3.2	18	81	13	75	24	8	6	60	1.51
51359332--51359425	24	4.2	24	82	15	137	24	8	7	59	1.52
51359344--51359442	6	16.7	6	82	1	74	20	6	11	62	1.49
51359692--51359811	62	2.0	61	98	1	231	25	10	20	44	1.82
51359910--51359960	24	2.1	24	92	0	84	39	1	31	27	1.68
51361703--51361915	96	2.3	94	85	6	281	28	8	15	47	1.74
51362667--51362718	21	2.5	21	87	6	70	32	44	7	15	1.75
51362685--51362730	21	2.2	21	92	0	74	32	43	10	13	1.78
51363415--51363492	36	2.2	36	95	0	138	51	23	6	19	1.69
51363413--51363500	36	2.3	38	83	13	119	51	22	6	19	1.70
51363852--51363881	15	2.0	15	93	0	51	6	30	0	63	1.20
51364443--51364473	5	6.2	5	100	0	62	19	0	0	80	0.71
51365476--51365503	6	4.7	6	100	0	56	0	17	0	82	0.68
51366215--51366246	15	2.1	15	94	0	55	31	9	25	34	1.87
51366224--51366248	12	2.1	12	100	0	50	36	8	24	32	1.84
51370332--51370404	22	3.4	22	77	7	69	65	0	5	28	1.14
51370393--51370434	22	1.9	22	85	0	57	57	2	4	35	1.33
51370263--51370436	3	60.0	3	70	7	110	59	1	6	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51371108--51371132	7	3.6	7	100	0	50	12	0	0	88	0.53
51374880--51374908	15	1.9	15	100	0	58	3	20	41	34	1.69
51374956--51374983	3	9.3	3	100	0	56	0	32	35	32	1.58
51374902--51374965	27	2.4	27	97	0	119	7	20	39	32	1.81
51389617--51389650	15	2.3	15	89	0	50	44	8	17	29	1.79
51390171--51390294	53	2.3	52	78	8	124	44	1	31	22	1.63
51396760--51396829	28	2.5	28	86	9	90	28	14	25	31	1.95
51402854--51402899	10	4.5	10	83	2	56	47	23	2	26	1.63
51406034--51406299	47	5.6	47	92	1	415	28	30	8	32	1.87
51406034--51406299	96	2.8	94	90	3	415	28	30	8	32	1.87
51406524--51406666	40	3.6	41	83	9	170	26	27	20	24	1.99
51413983--51414076	46	2.0	46	97	0	179	44	11	7	36	1.69
51424399--51424498	40	2.5	39	83	6	121	29	15	23	33	1.94
51432565--51432749	79	2.3	82	83	7	229	24	27	22	24	2.00
51432546--51432749	40	5.1	40	81	8	229	24	27	22	25	2.00
51440489--51440673	79	2.3	82	83	7	229	24	27	22	24	2.00
51440470--51440673	40	5.1	40	81	8	229	24	27	22	25	2.00
51444401--51444432	14	2.4	13	90	10	55	18	6	12	62	1.50
51445158--51445195	19	2.0	19	85	10	51	18	10	0	71	1.14
51452663--51452692	14	2.1	15	93	6	53	13	10	13	63	1.52
51455194--51455292	25	4.0	25	85	2	101	32	22	15	30	1.94
51458887--51459030	27	5.3	27	82	9	159	40	21	16	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51459065--51459110	23	2.0	24	84	16	62	26	13	17	43	1.85
51459381--51459455	18	4.1	18	70	14	55	32	14	14	38	1.87
51459444--51459538	34	2.8	34	90	0	136	27	22	25	25	2.00
51460571--51460599	6	4.8	6	100	0	58	68	0	13	17	1.20
51462770--51462994	40	5.6	40	83	5	258	25	24	27	23	2.00
51462770--51463030	80	3.3	80	83	3	312	25	24	26	23	2.00
51462770--51463030	120	2.2	120	83	6	325	25	24	26	23	2.00
51467033--51467253	29	7.6	29	70	16	118	34	22	18	24	1.96
51467036--51467111	30	2.6	29	83	4	98	34	21	22	22	1.97
51467179--51467264	29	3.0	29	86	6	104	38	22	17	22	1.93
51475508--51475749	47	5.1	47	88	4	331	33	10	29	27	1.90
51475582--51475657	24	3.2	24	62	23	61	28	13	32	25	1.93
51475723--51475841	46	2.6	47	86	4	170	36	8	30	25	1.85
51475723--51475859	46	3.0	46	82	4	168	35	7	31	25	1.83
51478987--51479021	17	2.1	17	94	0	61	54	11	0	34	1.37
51481349--51481410	9	6.2	9	75	17	52	20	3	4	70	1.19
51481347--51481413	15	4.7	15	74	10	59	19	2	4	73	1.14
51481349--51481410	21	3.0	21	78	0	79	20	3	4	70	1.19
51490467--51490575	42	2.6	43	81	7	132	27	23	16	32	1.96
51495078--51495115	18	2.1	18	95	0	67	26	28	23	21	1.99
51497127--51497170	10	4.2	10	83	11	52	54	2	0	43	1.12
51497178--51497218	21	1.9	22	90	5	66	43	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51498976--51499021	6	7.7	6	92	0	65	0	13	4	82	0.81
51512186--51512269	42	2.0	42	100	0	168	38	21	11	28	1.89
51514984--51515052	3	22.7	3	75	11	54	26	1	4	68	1.17
51514984--51515055	12	5.7	12	72	18	65	25	1	4	69	1.14
51514990--51515052	17	4.1	15	77	22	53	26	1	4	66	1.20
51517049--51517165	58	2.0	58	88	3	173	27	17	11	43	1.84
51521856--51522087	40	5.8	40	92	1	324	28	28	20	23	1.99
51529710--51529832	57	2.2	58	82	12	157	46	5	18	29	1.72
51529742--51529845	57	1.9	56	83	11	137	47	8	17	26	1.76
51532217--51532266	18	2.7	19	84	6	68	32	10	18	40	1.83
51532320--51532383	9	7.1	9	89	0	83	51	14	4	29	1.62
51532320--51532383	27	2.4	27	91	0	110	51	14	4	29	1.62
51532738--51532777	20	2.0	20	85	9	55	22	30	0	47	1.52
51534646--51534842	96	2.1	96	100	0	394	34	18	15	31	1.93
51544538--51544631	22	4.2	22	69	13	68	55	3	1	40	1.23
51551157--51551208	23	2.4	22	75	12	54	32	17	7	42	1.77
51551425--51551572	57	2.6	57	79	7	149	29	19	17	33	1.95
51552340--51552377	20	2.0	20	89	5	60	31	18	2	47	1.62
51560741--51560812	25	2.9	25	77	4	65	34	25	16	23	1.95
51569463--51569659	107	1.8	106	86	4	268	44	1	5	49	1.32
51569463--51569699	107	2.2	106	82	10	265	43	1	4	50	1.31
51569570--51569701	58	2.3	57	86	5	185	45	0	3	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51569868--51569921	16	3.4	16	84	0	72	29	24	1	44	1.64
51576612--51576754	45	3.1	44	68	23	98	30	28	18	22	1.98
51578594--51578675	26	3.2	26	96	0	155	35	28	7	29	1.84
51585664--51585771	26	4.2	26	96	0	198	36	25	6	31	1.82
51586162--51586293	45	2.9	45	84	2	158	27	16	12	43	1.83
51592724--51592771	25	1.9	25	91	0	78	52	8	8	31	1.61
51592718--51592780	25	2.5	25	72	23	60	50	6	7	34	1.57
51592777--51592836	29	2.0	30	80	3	68	63	3	8	25	1.38
51592755--51592872	30	4.1	29	70	19	70	57	5	5	32	1.42
51592836--51592888	17	3.2	16	76	10	54	52	7	1	37	1.41
51592945--51593071	23	5.4	24	74	23	103	56	3	5	34	1.38
51593002--51593128	62	2.0	62	80	8	143	59	3	3	33	1.32
51593051--51593083	15	2.2	15	89	10	50	66	0	0	33	0.92
51592992--51593344	23	16.3	22	66	22	128	58	5	3	32	1.37
51593458--51593507	24	2.2	24	86	10	70	54	2	4	40	1.31
51595141--51595459	87	3.6	88	83	6	371	34	20	16	28	1.94
51595141--51595459	173	1.8	175	85	5	457	34	20	16	28	1.94
51607034--51607444	25	16.3	25	67	23	149	55	6	6	31	1.50
51607319--51607444	24	5.2	25	73	20	106	57	3	5	33	1.41
51607376--51607506	64	2.0	64	81	8	151	60	3	3	32	1.30
51607427--51607460	16	2.2	16	89	5	52	67	0	0	32	0.91
51607366--51607521	24	6.9	22	74	20	119	58	4	2	33	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51607415--51607525	11	10.1	11	66	11	57	58	5	1	34	1.31
51608225--51608274	25	2.0	25	100	0	100	40	16	12	32	1.84
51608616--51608673	19	3.2	19	68	22	61	36	1	10	51	1.46
51608619--51608685	35	1.9	35	96	0	125	35	1	11	50	1.48
51615511--51615568	19	3.2	19	65	22	52	36	1	8	53	1.42
51615514--51615580	35	1.9	35	93	0	116	35	1	10	52	1.45
51617352--51617458	23	4.6	23	73	19	89	59	4	2	32	1.32
51617399--51617469	22	3.3	21	80	18	69	57	4	2	35	1.33
51617553--51617594	3	14.0	3	80	9	50	59	0	4	35	1.19
51618861--51618919	29	2.0	29	100	0	118	27	23	3	45	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325