Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  297  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96809712--96809772
32
1.9
32
96
0
113
37
9
27
24
1.87
96814299--96814330
15
2.1
15
94
0
55
34
0
0
65
0.93
96814307--96814349
17
2.6
17
85
7
54
37
4
0
58
1.19
96818721--96818752
12
2.7
12
100
0
64
31
15
0
53
1.43
96829590--96829632
17
2.4
18
80
7
61
53
0
4
41
1.21
96831569--96831624
22
2.5
22
91
0
85
25
32
26
16
1.96
96836134--96836294
42
3.7
42
78
8
153
29
27
14
28
1.95
96836202--96836337
48
2.9
48
85
5
170
30
25
13
30
1.94
96847974--96848033
30
2.0
30
90
0
93
40
13
25
21
1.89
96848596--96848638
17
2.4
18
80
7
61
53
0
4
41
1.21
96850618--96850660
22
2.0
22
90
0
68
32
39
18
9
1.83
96851874--96851923
21
2.4
21
86
0
73
22
36
30
12
1.90
96853650--96853674
11
2.3
11
100
0
50
40
0
0
60
0.97
96856061--96856090
11
2.6
12
89
10
53
26
13
0
60
1.34
96856609--96856647
3
12.7
3
83
5
51
58
2
0
38
1.12
96856889--96856927
12
3.1
12
82
13
51
53
0
0
46
1.00
96858135--96858209
21
3.6
21
87
0
96
22
25
32
20
1.98
96858791--96858820
15
1.9
16
93
6
53
80
3
0
16
0.85
96876384--96876414
14
2.2
14
100
0
62
45
6
0
48
1.28
96878446--96878559
53
2.2
53
91
3
185
15
21
22
40
1.91
96878764--96878878
18
6.3
18
74
4
97
34
8
16
40
1.79
96881099--96881206
26
4.2
26
93
0
189
32
7
24
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96883961--96884004
18
2.4
18
85
7
54
43
2
4
50
1.35
96888019--96888089
24
2.9
25
68
6
65
38
7
2
52
1.44
96888416--96888484
21
3.3
21
70
11
61
23
21
7
47
1.75
96890258--96890297
19
2.2
19
86
4
55
62
17
5
15
1.49
96890379--96890411
14
2.3
15
94
5
59
57
6
9
27
1.53
96891252--96891282
16
1.9
16
93
0
53
41
16
16
25
1.88
96896591--96896622
16
2.0
16
93
0
55
40
6
6
46
1.54
96906656--96906696
21
2.0
21
90
0
64
29
21
29
19
1.98
96923553--96923638
4
21.8
4
71
25
51
73
0
4
22
1.02
96923553--96923663
37
3.1
35
78
18
106
74
0
4
20
0.99
96923552--96923663
19
5.8
19
75
18
81
75
0
4
20
0.98
96923554--96923643
15
6.1
15
70
22
66
73
0
4
22
1.01
96936247--96936386
39
3.6
39
89
0
217
38
23
24
13
1.91
96936265--96936368
21
5.2
21
73
13
103
40
22
24
13
1.89
96948985--96949020
17
2.1
17
94
0
63
33
27
22
16
1.95
96958832--96958903
35
2.1
35
100
0
144
59
20
13
5
1.54
96976696--96976733
18
2.1
18
100
0
76
44
10
5
39
1.61
96980035--96980189
46
3.4
46
97
0
292
36
13
24
25
1.92
96980115--96980262
73
2.0
73
98
0
287
35
16
22
24
1.95
96980188--96980381
46
4.2
46
87
1
246
40
15
23
20
1.90
96980073--96980302
119
1.9
119
95
0
415
36
16
24
23
1.94
96980035--96980333
165
1.8
165
93
0
517
36
15
24
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96984779--96984841
27
2.4
27
81
2
74
30
9
1
58
1.39
96984779--96984863
27
3.3
26
74
21
72
31
9
1
57
1.38
96984796--96984863
24
2.7
27
78
17
74
32
8
1
57
1.39
96985346--96985375
14
2.1
14
100
0
60
33
6
0
60
1.23
96985346--96985502
64
2.5
58
75
16
136
34
6
5
54
1.48
96985433--96985490
23
2.6
23
83
8
66
34
3
5
56
1.38
96985356--96985439
23
3.3
23
73
17
62
34
8
4
52
1.53
96985539--96985600
24
2.7
23
80
5
61
37
6
4
51
1.49
96985695--96985758
25
2.5
25
82
2
83
32
7
6
53
1.55
96989096--96989196
48
2.1
48
87
3
150
29
25
8
35
1.87
96991426--96991506
6
13.5
6
100
0
162
16
0
0
83
0.64
96994930--96994954
11
2.3
11
100
0
50
56
0
8
36
1.29
96995275--96995326
3
17.3
3
100
0
104
0
32
0
67
0.91
97005331--97005394
31
2.1
30
82
5
76
34
4
12
48
1.62
97006909--97006950
3
14.3
3
87
5
50
69
4
0
26
1.08
97008301--97008331
15
2.1
14
94
5
53
35
0
12
51
1.40
97008705--97008787
42
2.0
42
85
0
112
15
22
27
33
1.95
97008705--97008761
21
2.7
21
100
0
114
14
28
29
28
1.95
97019872--97019943
18
4.1
18
72
13
51
37
2
1
58
1.21
97027768--97027808
21
2.0
21
85
4
57
36
0
2
60
1.10
97030376--97030416
5
8.0
5
89
5
64
24
0
0
75
0.80
97037946--97037998
27
2.0
27
88
0
79
39
1
7
50
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97042283--97042455
93
1.9
93
91
2
285
28
31
20
19
1.97
97042284--97042451
46
3.6
46
79
6
187
29
30
20
19
1.97
97043830--97043912
15
5.6
14
73
10
58
55
18
16
9
1.68
97043841--97043918
15
5.2
15
71
11
70
55
16
16
11
1.69
97046835--97047008
45
3.8
46
79
14
198
29
30
20
19
1.97
97046842--97047012
92
1.9
92
93
2
299
28
30
21
19
1.97
97051518--97051562
22
2.0
22
100
0
90
48
15
13
22
1.79
97056749--97056816
16
4.4
15
71
14
50
54
1
2
41
1.24
97057041--97057131
4
22.2
4
80
8
67
34
1
63
1
1.09
97057066--97057157
10
9.2
10
75
4
60
38
2
58
1
1.17
97057049--97057158
22
5.0
22
70
10
82
37
1
60
0
1.14
97057043--97057155
32
3.3
34
75
7
113
37
1
60
0
1.14
97057066--97057157
8
11.5
8
76
4
60
38
2
58
1
1.17
97057100--97057151
18
2.9
18
79
0
59
36
3
57
1
1.28
97057158--97057188
3
10.3
3
92
0
53
61
3
35
0
1.12
97060575--97060633
30
2.0
29
83
3
73
57
5
3
33
1.37
97062701--97062754
24
2.3
23
87
3
72
61
9
3
25
1.43
97064633--97064687
24
2.3
24
90
0
83
21
23
14
40
1.90
97066194--97066255
18
3.5
17
82
10
63
43
1
1
53
1.20
97066200--97066253
22
2.5
22
84
3
74
42
1
1
53
1.22
97078765--97078901
67
2.0
67
95
0
247
39
9
17
33
1.82
97079676--97079800
62
2.0
62
95
3
225
44
18
9
27
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97083242--97083277
15
2.4
15
100
0
72
25
22
5
47
1.73
97086568--97086605
18
2.1
18
100
0
76
39
13
31
15
1.86
97087370--97087445
22
3.7
21
76
15
68
40
17
6
35
1.75
97087399--97087496
35
2.7
37
87
12
150
35
16
10
37
1.82
97087406--97087496
19
4.9
19
92
8
161
36
15
10
37
1.83
97087855--97087994
45
3.1
45
83
2
183
26
29
15
29
1.96
97087842--97087969
45
2.9
45
88
1
168
27
28
13
30
1.94
97088031--97088162
41
3.3
41
64
33
106
23
25
17
34
1.96
97088010--97088304
78
3.8
78
87
1
430
25
22
18
33
1.97
97095005--97095085
40
2.0
40
97
0
153
41
17
11
29
1.84
97098936--97099011
22
3.7
21
76
15
68
40
17
6
35
1.75
97098965--97099043
35
2.2
37
86
13
121
35
16
10
37
1.82
97098986--97099041
17
3.5
15
88
9
60
35
16
10
37
1.83
97098972--97099043
19
3.9
19
89
10
123
36
15
11
37
1.83
97101513--97101550
3
12.3
3
88
5
58
60
2
2
34
1.24
97101988--97102033
16
2.9
16
86
0
56
50
0
50
0
1.00
97102679--97102726
16
3.0
16
96
0
87
12
6
41
39
1.68
97108279--97108315
4
9.2
4
100
0
74
24
0
24
51
1.49
97110655--97110700
22
2.1
22
84
8
58
63
4
21
10
1.44
97110793--97110820
1
28.0
1
100
0
56
100
0
0
0
0.00
97120813--97120844
3
10.7
3
100
0
64
34
0
0
65
0.93
97129458--97129806
138
2.6
139
77
8
371
52
12
12
23
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97136629--97136661
12
2.8
12
100
0
66
0
24
30
45
1.53
97137454--97137508
24
2.3
24
84
6
76
30
20
20
29
1.97
97139810--97139835
2
13.0
2
100
0
52
50
0
0
50
1.00
97142537--97142663
30
4.4
30
78
10
108
43
28
14
13
1.84
97148818--97148925
26
4.2
26
87
0
171
37
26
6
28
1.81
97149677--97149894
92
2.4
92
88
1
303
32
11
14
40
1.83
97150562--97150603
16
2.7
15
80
20
50
30
0
9
59
1.29
97150562--97150602
19
2.4
17
88
12
57
31
0
9
58
1.31
97150656--97150717
33
1.9
32
83
9
81
54
6
0
38
1.26
97153094--97153122
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325