genome.fa.s3.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  196  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63538344--63538410	20	3.5	17	75	18	62	55	1	17	25	1.51
63538364--63538407	20	2.2	20	88	8	63	59	0	18	22	1.38
63538443--63538493	25	2.0	26	84	3	68	68	9	7	13	1.38
63538885--63538969	20	4.2	20	74	5	82	54	11	15	18	1.71
63539134--63539179	20	2.3	21	85	7	60	67	4	10	17	1.37
63540496--63540546	19	2.8	18	81	18	70	35	3	0	60	1.15
63540496--63540552	17	3.2	17	77	18	62	31	5	0	63	1.17
63541638--63541697	31	1.9	31	89	0	93	25	21	10	43	1.83
63542180--63542258	35	2.3	35	81	0	104	53	13	13	18	1.73
63542931--63542955	13	1.9	13	100	0	50	68	0	0	32	0.90
63542934--63542974	14	3.0	14	82	13	50	70	0	0	29	0.87
63544178--63544215	17	2.1	19	85	9	53	5	15	7	71	1.28
63548302--63548334	16	2.1	16	94	0	57	27	6	24	42	1.78
63552791--63552888	48	2.0	48	96	0	178	36	13	9	40	1.76
63558907--63558997	44	2.1	44	89	0	137	48	10	12	28	1.74
63561541--63561587	23	2.0	23	95	0	85	31	21	6	40	1.78
63561932--63561991	30	2.0	29	84	9	77	60	1	5	33	1.29
63563073--63563113	20	2.0	20	86	9	57	39	0	2	58	1.11
63575005--63575149	26	5.5	26	72	8	96	62	2	3	31	1.26
63574998--63575165	29	5.5	28	75	14	104	62	2	4	30	1.27
63575090--63575165	33	2.3	33	82	10	93	61	2	3	31	1.28
63575097--63575137	22	1.9	21	90	5	64	53	4	2	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63574849--63575149	3	101.0	3	69	13	160	61	3	4	30	1.31
63575389--63575487	3	34.7	3	73	15	59	65	1	4	29	1.17
63575267--63575560	148	2.0	148	91	2	484	60	4	4	30	1.37
63577311--63577666	75	4.7	76	88	4	486	33	19	17	29	1.95
63586877--63586927	26	2.0	26	96	0	93	29	35	23	11	1.90
63586783--63587005	103	2.2	104	92	2	369	31	31	18	17	1.95
63587332--63587395	30	2.2	29	81	10	76	29	28	6	35	1.82
63587339--63587395	30	1.9	30	85	3	80	29	24	7	38	1.82
63594240--63594292	26	2.0	26	92	0	88	28	33	20	16	1.95
63594318--63594535	103	2.1	101	92	3	357	32	31	18	17	1.94
63594863--63594926	30	2.2	29	81	10	76	29	28	6	35	1.82
63594870--63594926	30	1.9	30	85	3	80	29	24	7	38	1.82
63597400--63597433	16	2.2	16	94	5	61	76	11	0	11	1.02
63599699--63599746	11	4.8	10	80	19	55	60	4	0	35	1.16
63599704--63599747	18	2.6	18	85	7	56	61	2	0	36	1.09
63601369--63601420	17	2.9	19	72	18	58	32	0	5	61	1.20
63601369--63601421	19	2.9	19	76	21	60	32	0	5	62	1.19
63602430--63602463	17	1.9	18	94	5	61	17	0	11	70	1.16
63611562--63612624	210	5.1	210	89	4	1587	29	17	22	30	1.97
63611562--63612747	420	2.8	413	86	5	1742	29	17	22	30	1.97
63612841--63612925	45	1.9	45	90	2	136	29	14	30	25	1.95
63614150--63614298	39	3.9	38	85	4	174	47	4	16	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63614815--63614866	20	2.5	22	79	20	67	38	3	0	57	1.17
63614815--63614866	19	2.5	22	79	20	67	38	3	0	57	1.17
63615061--63615113	20	2.4	23	81	12	67	35	9	3	50	1.53
63615931--63615969	19	1.9	19	85	10	51	30	20	5	43	1.73
63618648--63618789	49	2.9	49	87	4	205	27	26	20	26	1.99
63621538--63621664	42	3.0	42	82	2	155	30	26	13	29	1.94
63645526--63645578	28	1.9	28	88	3	81	47	1	5	45	1.37
63646639--63646851	106	2.0	106	100	0	426	43	9	10	36	1.71
63647858--63647887	15	1.9	16	93	6	53	56	0	0	43	0.99
63655616--63655781	46	3.4	47	88	5	192	30	28	16	24	1.97
63655596--63655830	50	4.8	49	81	8	255	30	25	18	25	1.98
63669950--63670115	88	1.9	88	89	2	262	31	19	22	25	1.98
63674063--63674160	21	4.5	22	78	7	92	37	26	20	15	1.92
63674063--63674170	23	4.9	22	78	5	94	37	25	20	16	1.93
63674544--63674601	15	3.8	15	88	2	89	51	12	0	36	1.39
63680461--63680544	23	3.8	22	82	6	91	33	28	23	14	1.94
63680447--63680544	21	4.5	22	82	6	110	36	27	21	14	1.92
63682998--63683022	13	1.9	13	100	0	50	32	0	40	28	1.57
63682995--63683029	11	3.0	11	84	15	52	34	0	37	28	1.58
63687044--63687115	34	2.1	35	84	7	94	20	25	11	43	1.85
63688090--63688236	60	2.5	60	73	9	140	26	24	19	29	1.98
63688368--63688528	80	2.0	81	97	1	306	32	25	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63688680--63688734	27	2.1	27	86	3	76	25	12	16	45	1.83
63697212--63697400	40	4.8	40	88	2	247	24	23	28	23	2.00
63702629--63702676	25	1.9	25	86	0	69	31	22	16	29	1.96
63702807--63702901	25	3.8	24	80	9	93	29	23	22	25	1.99
63702807--63702883	25	3.1	25	86	1	102	32	22	19	25	1.97
63702807--63702901	50	1.9	50	80	8	113	29	23	22	25	1.99
63703098--63703236	31	4.5	31	90	0	215	33	19	25	20	1.96
63712163--63712403	92	2.6	92	85	0	320	31	19	23	25	1.98
63712582--63712625	4	11.0	4	100	0	88	25	0	25	50	1.50
63712915--63712961	20	2.3	21	88	3	69	14	10	46	27	1.78
63713122--63713154	13	2.5	13	90	0	57	6	27	45	21	1.75
63713783--63713807	5	5.0	5	100	0	50	80	0	0	20	0.72
63716064--63716167	22	4.7	22	71	4	75	40	19	25	15	1.90
63715942--63716101	86	1.9	87	80	6	191	40	18	24	16	1.90
63716032--63716212	66	2.8	66	77	10	165	38	18	25	17	1.92
63715944--63716212	44	6.2	44	71	5	186	39	18	25	17	1.92
63717525--63717599	30	2.5	29	91	4	105	54	10	5	29	1.57
63717779--63717853	19	4.2	19	83	11	79	38	13	13	34	1.84
63717787--63717853	19	3.7	19	86	9	104	38	11	14	34	1.84
63718150--63718183	18	1.9	17	88	5	50	29	0	0	70	0.87
63719028--63719069	17	2.5	17	96	0	75	16	21	16	45	1.86
63730108--63730269	89	1.8	87	81	5	200	32	19	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63730345--63730476	62	2.1	62	95	0	246	28	19	25	26	1.99
63730410--63730580	78	2.2	78	90	4	281	32	19	23	25	1.98
63730610--63730779	89	1.9	89	93	0	295	27	16	30	25	1.97
63730521--63730793	45	6.0	45	80	6	293	29	16	28	25	1.97
63731141--63731231	19	4.9	19	89	8	143	37	12	14	36	1.83
63731162--63731217	18	3.5	15	81	18	60	37	10	16	35	1.83
63731149--63731238	35	2.5	37	87	10	134	37	12	14	35	1.83
63732204--63732323	13	9.1	13	69	17	86	50	18	3	27	1.62
63732218--63732315	25	3.7	25	69	15	63	51	18	3	27	1.61
63739874--63740053	39	4.6	40	86	4	179	25	21	28	25	1.99
63739835--63740056	40	5.6	39	84	4	230	24	20	28	26	1.99
63739835--63740054	79	2.8	79	83	2	235	25	20	28	25	1.99
63739910--63740091	79	2.3	79	81	0	213	25	20	28	24	1.99
63747739--63747961	40	5.6	39	83	5	232	24	20	28	26	1.99
63747814--63747996	79	2.3	80	81	1	217	25	20	28	25	1.99
63750423--63750461	14	2.8	14	84	0	51	41	46	0	12	1.42
63755652--63755821	40	4.3	40	87	0	216	25	28	21	24	1.99
63755652--63755874	40	5.6	40	82	4	202	26	28	21	24	1.99
63755650--63755874	80	2.8	79	81	3	236	26	28	20	24	1.99
63757533--63757575	20	2.2	20	100	0	86	41	4	23	30	1.74
63758463--63758509	19	2.5	19	85	0	67	25	6	19	48	1.72
63759574--63759642	34	2.0	34	97	0	129	17	14	13	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63759577--63759653	34	2.3	34	88	4	111	18	12	15	53	1.73
63771014--63771186	46	3.7	46	80	13	219	20	19	30	29	1.97
63771008--63771179	93	1.8	93	96	0	317	20	20	30	29	1.97
63777860--63778035	46	3.8	46	80	12	225	20	20	29	29	1.98
63777857--63778028	93	1.8	93	97	0	326	20	20	29	28	1.98
63786712--63786889	27	6.6	27	82	3	178	29	27	15	26	1.96
63788962--63789139	27	6.6	27	83	3	205	26	15	28	29	1.96
63788963--63789118	82	1.9	81	88	3	233	26	15	28	29	1.96
63788959--63789139	82	2.2	81	83	2	229	27	15	27	29	1.96
63791491--63791524	3	11.3	3	100	0	68	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325