genome.fa.s3.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  213  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69400427--69400678	55	4.7	54	79	8	241	36	17	25	21	1.94
69400430--69400631	109	1.8	110	88	5	311	34	17	26	22	1.96
69404973--69405028	28	2.0	29	85	3	78	21	41	19	17	1.91
69408637--69408678	18	2.3	19	80	12	52	23	4	9	61	1.45
69411112--69411219	47	2.3	47	100	0	216	55	4	12	27	1.56
69415302--69415340	18	2.1	18	85	4	51	58	0	28	12	1.34
69418615--69418730	42	2.8	42	77	0	142	33	14	23	28	1.94
69426122--69426296	85	2.1	85	96	0	323	33	7	25	33	1.84
69426308--69426506	42	4.6	42	80	3	182	29	14	25	30	1.95
69429618--69429663	22	2.1	22	84	8	58	50	23	0	26	1.50
69431784--69431812	12	2.3	13	94	5	51	48	27	3	20	1.66
69438033--69438208	27	6.5	26	84	2	163	27	15	27	30	1.96
69438031--69438208	54	3.3	54	79	7	191	27	15	27	29	1.96
69438032--69438187	82	1.9	81	87	6	226	27	15	27	29	1.96
69438028--69438208	82	2.2	81	82	4	222	27	15	27	29	1.96
69445345--69445658	46	6.7	47	71	12	168	31	18	27	23	1.97
69455400--69455556	65	2.4	66	83	11	205	35	14	28	22	1.93
69463095--69463413	46	6.7	49	75	10	240	26	19	30	24	1.98
69469601--69469654	27	2.0	27	85	3	74	46	0	3	50	1.19
69469957--69469997	21	2.0	21	85	0	55	48	0	2	48	1.14
69470996--69471072	33	2.3	33	84	6	93	41	0	19	38	1.52
69476642--69476835	39	5.0	39	90	0	289	23	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69480315--69480419	55	1.9	55	82	3	131	24	30	22	21	1.99
69484971--69485032	28	2.2	28	80	11	74	22	20	22	33	1.97
69487215--69487329	55	2.1	56	80	11	130	34	23	23	18	1.96
69487240--69487329	27	3.2	27	80	13	103	32	25	23	18	1.97
69487435--69487499	28	2.3	28	91	0	103	30	9	27	32	1.88
69488567--69488599	12	2.6	13	85	9	50	45	0	45	9	1.35
69491098--69491344	40	6.2	40	87	5	247	23	22	28	25	1.99
69491141--69491344	79	2.6	79	80	5	250	24	21	27	26	1.99
69498348--69498462	55	2.1	56	82	8	137	34	22	24	18	1.96
69498373--69498462	27	3.2	27	81	7	101	32	24	24	18	1.97
69498568--69498632	28	2.3	28	94	0	112	30	7	27	33	1.85
69499694--69499726	12	2.6	13	85	9	50	45	0	45	9	1.35
69500672--69500804	35	3.8	35	78	5	135	33	13	19	33	1.91
69501960--69502031	28	2.6	28	79	0	81	23	22	27	26	1.99
69503365--69503526	39	4.2	39	88	0	225	27	27	20	24	1.99
69510338--69510521	27	6.8	27	84	2	163	36	22	5	35	1.79
69510390--69510611	27	8.2	27	82	3	196	39	22	6	31	1.79
69510458--69510614	82	1.9	82	84	0	206	42	22	7	28	1.79
69510604--69510736	27	5.0	27	83	1	133	36	18	18	26	1.94
69510604--69510736	54	2.5	54	86	1	178	36	18	18	26	1.94
69510604--69510732	53	2.4	53	87	2	170	37	17	19	26	1.93
69510939--69511008	25	2.8	25	84	0	86	30	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69510964--69511015	25	2.1	25	85	3	70	36	21	15	26	1.93
69511230--69511313	31	2.7	31	92	1	143	32	19	26	22	1.97
69512215--69512251	17	2.2	16	90	4	56	0	27	0	72	0.84
69512309--69512345	14	2.6	15	83	12	51	37	5	0	56	1.22
69512333--69512371	18	2.0	20	85	9	55	35	2	0	61	1.10
69517027--69517060	16	2.1	16	100	0	68	41	23	0	35	1.55
69517719--69517896	40	4.5	41	87	7	244	25	27	22	24	2.00
69520693--69520752	30	2.0	30	93	0	102	30	25	6	38	1.81
69522563--69523055	48	10.2	48	95	0	824	30	26	6	36	1.81
69541802--69541878	40	1.9	40	89	0	118	31	23	16	28	1.96
69546945--69547002	30	1.9	30	85	0	80	32	13	25	27	1.94
69547345--69547560	46	4.7	45	79	14	208	26	20	30	22	1.98
69549880--69549943	32	2.0	32	100	0	128	31	12	21	34	1.91
69556360--69556581	123	1.8	123	97	0	426	26	13	22	36	1.92
69563466--69563641	27	6.5	26	84	2	163	27	15	27	30	1.96
69563464--69563641	54	3.3	54	79	7	191	27	15	27	29	1.96
69563465--69563620	82	1.9	81	87	6	226	27	15	27	29	1.96
69563461--69563641	82	2.2	81	82	4	222	27	15	27	29	1.96
69570674--69570848	53	3.3	54	83	5	221	26	15	28	29	1.96
69570675--69570848	27	6.5	26	83	3	186	26	15	28	29	1.96
69570675--69570827	80	1.9	80	87	2	227	26	15	28	29	1.96
69570671--69570848	80	2.2	80	82	2	223	26	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69578502--69578678	27	6.6	27	84	2	203	26	14	28	29	1.95
69578502--69578678	54	3.3	55	85	4	243	26	14	28	29	1.95
69578503--69578657	81	1.9	81	89	2	240	26	14	29	29	1.95
69578499--69578678	81	2.2	81	84	2	236	26	15	28	30	1.96
69581062--69581105	21	2.2	20	83	4	52	18	22	25	34	1.96
69595483--69595692	47	4.5	45	77	13	160	24	28	17	29	1.97
69595483--69595695	46	4.5	47	77	8	150	24	28	17	29	1.98
69602757--69602870	47	2.4	46	79	12	108	28	29	14	28	1.95
69618161--69618379	40	5.5	40	89	4	320	23	23	27	25	2.00
69631190--69631220	13	2.4	13	100	0	62	32	6	19	41	1.77
69631207--69631410	38	5.4	38	88	1	257	23	21	24	30	1.99
69631408--69631537	45	2.9	45	82	6	158	23	22	26	26	2.00
69637364--69637405	20	2.1	20	100	0	84	28	16	14	40	1.88
69644813--69644999	48	3.7	48	79	14	223	27	29	18	24	1.98
69644970--69645031	30	2.1	30	87	3	90	25	32	17	24	1.97
69644922--69645077	77	2.0	78	87	1	224	27	29	17	25	1.98
69644977--69645039	30	2.2	28	86	11	83	23	30	19	26	1.98
69646986--69647031	23	1.9	25	86	8	69	26	4	4	65	1.30
69648169--69648215	19	2.4	20	92	7	87	55	0	19	25	1.43
69648847--69648910	18	3.5	19	69	16	53	32	0	1	65	1.02
69651417--69651717	150	2.0	150	96	0	548	30	22	18	28	1.97
69658694--69658744	25	2.0	25	100	0	102	17	11	15	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69662883--69662924	16	2.6	16	100	0	84	50	7	7	35	1.57
69663981--69664097	51	2.3	51	89	2	182	34	14	21	29	1.93
69667100--69667141	20	2.1	20	82	8	50	66	9	9	14	1.44
69667192--69667225	18	1.9	18	88	5	52	8	20	0	70	1.13
69672441--69672655	48	4.5	46	75	14	145	27	17	31	23	1.97
69677649--69677731	40	2.1	40	95	0	148	33	26	12	27	1.92
69677742--69677927	95	1.9	96	90	3	295	23	30	19	26	1.98
69677702--69677938	50	4.8	50	83	8	290	24	30	18	27	1.98
69679918--69679992	37	2.0	38	94	2	134	30	21	8	40	1.82
69685041--69685071	14	2.2	14	94	0	53	22	0	16	61	1.34
69687024--69687062	5	7.8	5	83	11	53	79	2	0	17	0.84
69689470--69689497	7	4.0	7	100	0	56	0	14	0	85	0.59
69697849--69697873	7	3.6	7	100	0	50	88	0	12	0	0.53
69715665--69715698	13	2.6	13	95	0	59	20	20	26	32	1.97
69716744--69716792	21	2.3	21	76	13	55	53	6	0	40	1.26
69718704--69718732	12	2.3	13	94	5	51	65	17	0	17	1.27
69721213--69721263	13	3.9	13	76	0	57	35	7	23	33	1.84
69721424--69721471	8	5.6	9	75	24	50	43	0	0	56	0.99
69721424--69721482	19	3.1	19	90	7	84	44	0	0	55	0.99
69723304--69723614	72	4.3	72	92	1	491	55	15	4	24	1.59
69724043--69724108	18	3.7	18	95	0	123	40	12	12	34	1.80
69725038--69725107	21	3.3	21	75	11	79	47	7	10	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69725032--69725093	22	2.7	23	76	14	65	51	4	6	37	1.49
69727154--69727193	21	1.9	21	94	0	71	52	7	30	10	1.62
69727752--69727794	19	2.3	19	88	8	61	51	0	0	48	1.00
69727780--69727845	24	2.7	25	79	9	73	60	0	1	37	1.06
69727784--69727820	17	2.2	17	95	0	65	70	0	0	29	0.88
69728199--69728255	16	3.6	16	81	11	57	66	0	1	31	1.02
69728201--69728260	15	4.0	15	73	14	52	70	0	1	28	0.97
69729844--69729880	19	1.9	19	88	0	56	32	10	13	43	1.79
69729581--69730064	202	2.4	202	85	2	657	32	11	15	40	1.83
69730233--69730395	46	3.6	46	76	8	163	24	6	20	48	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325