genome.fa.s3.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  148  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47619925--47620034	44	2.5	43	77	10	114	27	17	20	34	1.95
47619939--47620065	44	2.9	41	78	11	119	25	17	25	32	1.97
47631001--47631040	17	2.4	16	84	12	53	5	37	0	57	1.21
47635954--47636011	17	3.5	17	74	19	52	3	32	0	63	1.11
47640114--47640263	67	2.2	67	81	8	171	32	17	28	21	1.96
47640138--47640320	67	2.8	64	77	8	192	29	17	30	22	1.97
47643556--47643602	17	2.8	17	83	0	58	8	8	4	78	1.07
47643545--47643608	11	5.6	11	75	15	51	10	9	3	76	1.12
47643556--47643608	23	2.3	23	83	0	61	9	9	3	77	1.11
47660795--47660835	17	2.3	19	80	16	52	39	4	4	51	1.45
47661117--47661174	30	2.0	30	86	3	82	46	10	6	36	1.65
47663260--47663332	9	8.6	9	71	25	61	56	19	0	24	1.42
47663260--47663313	10	4.9	11	74	17	58	55	18	0	25	1.43
47663260--47663313	23	2.5	22	87	6	74	55	18	0	25	1.43
47663503--47663593	45	2.0	47	81	12	109	39	16	10	32	1.84
47667105--47667282	27	6.6	27	78	3	106	28	28	16	26	1.97
47667126--47667281	82	1.9	81	84	3	206	28	27	17	26	1.98
47668681--47668758	39	2.0	39	100	0	156	15	25	5	53	1.62
47678325--47678403	24	3.2	26	62	26	62	24	18	30	26	1.98
47678313--47678496	50	3.8	49	84	3	237	24	17	29	28	1.97
47685054--47685105	27	2.0	26	84	3	68	34	21	26	17	1.95
47685698--47685728	10	3.0	10	95	4	53	9	32	19	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47700674--47700727	27	2.0	27	82	7	65	42	5	7	44	1.55
47702229--47702323	42	2.2	42	85	5	120	29	28	16	25	1.97
47705196--47705340	51	2.9	48	80	5	173	28	26	19	26	1.99
47712526--47712556	16	1.9	16	100	0	62	38	0	22	38	1.54
47715479--47715602	43	2.9	42	73	16	128	25	17	25	32	1.97
47720366--47720456	25	3.6	25	95	0	155	28	18	25	27	1.98
47720368--47720479	50	2.2	50	85	3	145	29	18	25	26	1.98
47721217--47721255	20	2.0	20	90	10	62	46	0	17	35	1.49
47721918--47722130	46	4.5	48	80	4	220	30	20	27	22	1.98
47722962--47722991	15	2.0	15	93	0	51	20	0	23	56	1.42
47723584--47723726	56	2.6	56	85	0	187	29	13	23	33	1.93
47723718--47723802	43	2.0	43	97	0	161	27	18	28	25	1.98
47723718--47723831	43	2.7	43	87	5	124	28	18	27	25	1.98
47729984--47730156	27	6.4	27	86	2	222	35	17	21	24	1.95
47729985--47730137	81	1.9	81	90	2	245	35	18	20	24	1.95
47732200--47732228	12	2.4	12	100	0	58	6	27	51	13	1.66
47737594--47737740	27	5.5	27	89	0	224	35	18	21	24	1.96
47737598--47737765	80	2.1	81	88	3	250	35	19	20	25	1.96
47739636--47739670	10	3.5	10	88	0	52	37	22	25	14	1.92
47741018--47741188	93	1.8	93	91	2	281	28	28	21	22	1.99
47741013--47741185	46	3.7	47	76	13	187	28	27	20	23	1.99
47741609--47741668	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47742884--47742945	33	1.9	32	83	3	79	20	22	20	35	1.96
47742797--47742939	72	2.1	67	83	9	171	19	27	22	30	1.98
47742907--47742966	27	2.3	26	85	2	75	21	23	20	35	1.96
47746029--47746077	25	2.0	25	95	0	89	24	22	8	44	1.79
47757159--47757185	13	2.1	13	100	0	54	33	7	44	14	1.73
47759810--47759850	20	2.0	20	100	0	82	14	4	14	65	1.42
47759814--47759857	20	2.2	20	87	0	61	13	2	20	63	1.40
47759910--47759974	32	2.0	32	96	0	121	33	3	16	46	1.63
47761399--47761450	20	2.6	20	78	9	61	59	15	21	3	1.52
47761417--47761482	25	2.6	25	85	0	78	54	18	22	4	1.61
47762379--47762460	42	2.0	42	82	4	103	17	29	26	26	1.97
47767906--47767967	20	3.1	19	78	15	63	14	20	1	62	1.39
47767906--47767944	19	2.0	19	90	5	60	12	23	0	64	1.28
47768400--47768536	47	2.9	47	94	0	238	37	11	15	35	1.84
47768819--47768854	18	2.0	18	94	0	63	30	11	13	44	1.79
47768973--47769011	18	2.2	18	95	0	69	33	5	0	61	1.18
47769460--47769582	60	2.0	60	100	0	246	44	11	12	31	1.77
47769673--47769725	26	2.0	26	100	0	106	33	7	15	43	1.74
47773342--47773473	42	3.1	42	74	6	131	37	25	14	23	1.92
47774895--47774939	22	2.0	22	83	8	56	24	46	4	24	1.71
47785621--47785696	39	1.9	39	89	0	116	32	7	11	47	1.69
47785721--47785835	52	2.2	52	87	3	162	33	14	13	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47785716--47785835	50	2.4	50	85	2	159	33	15	12	39	1.84
47789206--47789390	79	2.3	80	81	8	207	24	28	22	23	1.99
47789187--47789390	40	5.1	40	80	8	220	24	28	22	24	1.99
47794737--47794777	20	2.0	20	90	0	64	12	26	17	43	1.84
47797444--47797625	93	2.0	93	91	0	292	29	21	20	29	1.98
47802169--47802283	25	4.6	25	79	4	97	20	28	17	33	1.96
47802176--47802297	25	4.9	25	78	6	95	21	27	18	33	1.96
47804760--47804796	19	1.9	19	100	0	74	48	16	16	18	1.81
47810899--47810947	20	2.3	21	74	22	57	51	0	0	48	1.00
47810905--47810946	20	2.2	19	87	12	59	54	0	0	45	0.99
47813455--47813496	22	1.9	22	90	0	66	19	9	9	61	1.53
47818978--47819025	7	6.7	7	79	11	53	58	0	2	39	1.10
47826823--47826856	18	2.0	16	88	11	50	58	2	0	38	1.13
47830315--47830588	47	5.9	47	76	9	213	23	29	18	28	1.98
47830317--47830585	94	2.9	93	78	8	251	23	30	18	28	1.97
47830317--47830580	140	1.9	141	85	3	372	23	29	18	28	1.97
47833196--47833337	49	3.0	48	81	9	164	28	25	22	23	1.99
47833970--47834010	21	1.9	22	85	14	59	41	0	21	36	1.54
47834516--47834613	52	1.9	51	95	2	178	27	13	29	29	1.94
47839287--47839483	27	7.3	27	86	4	254	28	24	8	38	1.84
47839287--47839483	81	2.4	81	91	3	308	28	24	8	38	1.84
47839514--47839651	27	5.1	27	85	6	163	42	22	5	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839514--47839693	54	3.3	55	83	5	179	43	21	6	29	1.76
47840620--47840723	27	3.9	27	88	3	165	30	20	22	26	1.98
47840620--47840745	27	4.8	27	82	6	152	30	22	20	26	1.98
47840620--47840731	54	2.1	55	94	1	199	33	20	20	25	1.97
47840890--47840981	42	2.2	42	88	0	130	29	13	20	36	1.90
47841005--47841083	31	2.5	31	95	0	149	30	18	24	26	1.98
47848170--47848211	21	2.0	21	100	0	84	19	28	19	33	1.96
47850767--47850923	46	3.4	44	81	10	165	26	29	17	26	1.97
47850802--47851016	46	4.7	43	75	14	137	24	28	19	28	1.98
47856570--47856694	6	20.3	6	70	16	87	48	13	19	19	1.81
47856579--47856672	37	2.5	37	94	0	161	47	12	20	19	1.81
47856627--47856694	25	2.7	25	90	0	109	45	14	20	19	1.85
47857258--47857360	54	1.9	53	90	2	161	24	21	19	34	1.96
47857254--47857388	27	5.0	27	82	0	144	25	19	20	35	1.95
47859454--47859503	18	2.8	18	87	6	75	54	14	14	18	1.72
47859454--47859525	6	11.8	6	73	14	58	50	12	18	19	1.78
47859489--47859553	25	2.6	25	82	4	78	46	12	16	24	1.82
47860169--47860255	27	3.2	27	88	0	120	28	20	16	34	1.94
47860240--47860343	27	3.9	27	70	5	84	31	7	24	36	1.84
47864893--47865118	40	5.7	40	85	7	241	26	22	25	25	2.00
47864946--47865151	80	2.6	79	81	9	206	28	20	26	24	1.99
47864893--47865124	120	1.9	120	81	10	278	27	21	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47867911--47867935	13	1.9	13	100	0	50	76	16	0	8	1.02
47870911--47871054	47	3.1	47	85	0	189	32	9	29	27	1.89
47870940--47871013	23	3.1	25	62	25	59	29	13	33	22	1.93
47871028--47871211	98	1.9	96	89	4	289	36	7	26	29	1.84
47871027--47871211	48	3.8	48	88	5	282	36	7	26	29	1.84
47871360--47871464	37	2.8	37	89	0	156	24	17	31	26	1.97
47874867--47874926	30	2.0	30	90	0	93	33	25	11	30	1.91
47876144--47876241	24	4.0	24	90	1	151	36	5	37	20	1.75
47882123--47882199	24	3.2	23	85	8	109	37	5	37	19	1.74
47888929--47888985	24	2.3	25	82	14	66	63	1	12	22	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325