genome.fa.s3.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  145  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46763393--46763470	24	3.2	26	61	26	60	47	16	10	25	1.78
46763401--46763476	24	3.2	24	63	26	61	47	14	9	28	1.75
46763392--46763500	48	2.3	48	95	0	200	44	15	12	26	1.83
46763440--46763636	64	3.1	64	90	0	322	45	14	14	25	1.83
46763485--46763524	16	2.5	16	87	0	62	47	17	15	20	1.83
46763330--46763564	112	2.1	110	88	1	344	45	13	13	27	1.80
46763772--46763797	6	4.3	6	100	0	52	69	15	0	15	1.20
46763806--46763847	18	2.3	18	76	15	50	50	9	11	28	1.70
46763875--46763919	6	7.5	6	82	9	56	62	13	6	17	1.52
46763865--46763907	18	2.4	18	84	0	59	58	11	6	23	1.57
46764416--46764488	31	2.4	29	77	8	83	23	10	19	46	1.81
46768309--46768351	22	2.0	22	86	9	61	79	2	2	16	0.95
46768468--46768494	3	9.0	3	100	0	54	66	0	0	33	0.92
46770211--46770733	44	11.8	44	69	8	265	30	18	20	30	1.97
46770397--46770641	133	1.8	133	84	5	334	30	19	20	29	1.97
46770207--46770783	221	2.6	221	86	1	809	29	18	20	31	1.96
46770610--46770867	89	2.9	89	78	5	225	28	18	21	31	1.97
46770606--46770867	44	5.9	45	69	7	140	28	18	21	31	1.97
46770929--46771101	44	3.9	44	78	4	170	28	26	17	26	1.98
46776855--46776891	4	9.2	4	100	0	74	51	24	0	24	1.49
46781277--46781400	39	3.1	37	77	17	99	60	2	0	36	1.16
46781281--46781579	10	31.9	9	69	19	79	59	3	2	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46782202--46782455	9	27.7	9	70	17	130	32	1	3	63	1.18
46782238--46782347	58	1.9	58	83	3	141	32	0	3	63	1.12
46782402--46782453	19	2.8	18	77	5	59	36	1	0	61	1.07
46784501--46784634	40	3.3	40	85	0	169	23	17	25	33	1.96
46789340--46789378	20	2.0	20	94	0	69	46	15	15	23	1.83
46789426--46789548	45	2.7	44	86	6	165	31	21	22	23	1.98
46789440--46789548	23	4.8	22	83	7	130	33	20	22	22	1.97
46791384--46791425	20	2.1	20	86	0	57	19	26	16	38	1.92
46791635--46791676	23	2.0	21	86	13	59	23	16	21	38	1.93
46793593--46793706	35	3.3	35	69	7	106	17	21	20	40	1.91
46793624--46793738	34	3.4	34	69	7	115	19	21	17	41	1.90
46793593--46793755	69	2.4	69	94	0	281	19	23	19	38	1.93
46793941--46793994	27	2.0	27	85	3	74	12	7	38	40	1.72
46793956--46794007	27	1.9	27	84	0	68	17	9	36	36	1.82
46800360--46800384	12	2.1	12	100	0	50	48	16	8	28	1.74
46811502--46811567	34	1.9	34	87	0	96	53	24	0	22	1.47
46816543--46816634	29	3.2	29	79	14	109	27	14	28	30	1.95
46822456--46822501	23	2.0	23	95	0	83	23	8	23	43	1.82
46823090--46823176	31	2.8	31	92	0	147	25	19	28	26	1.99
46823203--46823322	46	2.6	46	84	5	145	28	15	25	30	1.96
46823294--46823391	42	2.3	42	91	3	153	31	14	26	27	1.95
46823294--46823405	42	2.7	42	84	8	147	31	14	25	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46832428--46832490	31	2.1	31	90	3	101	26	3	9	60	1.43
46832615--46832647	11	2.8	12	90	9	50	69	0	0	30	0.88
46834273--46834312	22	1.9	22	85	10	57	37	17	7	37	1.78
46846969--46847021	28	2.0	27	88	7	81	39	13	16	30	1.87
46848260--46848291	12	2.4	14	90	10	50	62	0	0	37	0.95
46852330--46852362	14	2.3	15	89	5	50	30	15	6	48	1.69
46855820--46855872	21	2.5	21	96	0	97	28	20	24	26	1.99
46858666--46858735	36	1.9	36	97	0	131	24	21	17	37	1.94
46862381--46862406	13	2.0	13	100	0	52	23	30	38	7	1.83
46864749--46864828	19	4.3	19	88	6	128	37	17	8	36	1.81
46865301--46865573	87	3.1	86	65	18	211	26	19	20	33	1.96
46865292--46865625	175	1.9	175	93	1	571	26	20	20	32	1.97
46865350--46865629	86	3.2	86	69	17	252	25	19	21	33	1.97
46865669--46865865	84	2.3	84	87	5	274	23	21	22	31	1.98
46865717--46865857	41	3.4	42	69	12	128	26	20	21	31	1.98
46866736--46866765	8	3.9	8	95	4	53	0	20	0	80	0.72
46866736--46866775	15	2.8	15	85	7	57	0	17	0	82	0.67
46867061--46867184	43	2.9	44	81	9	132	33	25	15	25	1.95
46872091--46872263	46	3.7	46	79	10	208	21	20	27	29	1.98
46872088--46872258	93	1.8	93	93	0	297	21	21	28	28	1.98
46879506--46879678	46	3.7	46	79	10	208	21	20	27	29	1.98
46879503--46879673	93	1.8	93	93	0	297	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46887350--46887379	6	5.0	6	91	0	51	16	3	0	80	0.85
46890120--46890193	24	3.1	24	88	0	112	24	12	31	32	1.92
46891882--46891938	27	2.1	27	96	0	105	31	17	14	36	1.89
46896954--46897180	46	4.9	45	88	4	292	40	12	24	21	1.88
46896955--46897173	93	2.4	92	88	0	312	41	12	24	21	1.87
46901997--46902056	25	2.3	26	86	8	79	60	6	6	26	1.47
46902058--46902083	9	2.9	9	100	0	52	80	19	0	0	0.71
46902161--46902222	33	1.9	33	83	6	83	46	6	8	38	1.59
46903654--46903707	23	2.3	23	90	0	90	18	0	40	40	1.51
46904579--46904711	43	3.1	43	78	2	126	33	25	14	27	1.94
46905813--46905920	55	2.0	55	100	0	216	37	10	18	34	1.85
46919040--46919080	21	2.0	21	100	0	82	46	24	14	14	1.82
46927395--46927439	20	2.2	20	96	0	81	24	4	35	35	1.76
46937511--46937539	13	2.3	13	94	5	51	34	0	6	58	1.25
46937635--46937672	18	2.1	18	100	0	76	34	15	5	44	1.69
46937780--46937817	7	5.4	7	100	0	76	44	0	0	55	0.99
46938735--46938772	14	2.7	14	91	0	58	39	5	15	39	1.70
46938764--46938800	19	1.9	19	88	0	56	29	2	10	56	1.47
46938874--46938916	18	2.4	18	96	0	77	46	2	0	51	1.13
46938869--46938977	54	2.0	54	81	10	125	45	2	0	50	1.22
46939094--46939172	25	3.3	25	67	13	67	45	13	8	31	1.75
46944589--46944828	38	5.8	38	80	12	237	30	25	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46944660--46944828	48	3.8	48	83	8	198	30	24	14	30	1.94
46948984--46949032	24	2.0	25	96	4	91	55	8	16	20	1.66
46952058--46952089	16	1.9	17	93	6	57	37	3	0	59	1.13
46955802--46956018	46	4.7	47	77	13	209	23	30	19	27	1.98
46955652--46956018	46	7.8	47	73	14	199	24	29	18	27	1.98
46955652--46956021	94	3.9	97	74	10	320	24	29	18	27	1.98
46963869--46964020	57	2.6	57	72	11	139	34	23	15	26	1.95
46963985--46964081	44	2.2	44	94	0	167	29	21	18	29	1.97
46968776--46968927	27	5.6	27	93	3	241	30	28	13	26	1.94
46968776--46968927	55	2.8	55	94	0	259	30	28	13	26	1.94
46976783--46976934	27	5.6	27	93	3	241	30	28	13	26	1.94
46976783--46976934	55	2.8	55	94	0	259	30	28	13	26	1.94
46981635--46981843	55	3.9	53	78	6	222	35	16	24	22	1.95
46981642--46981842	108	1.8	110	88	2	307	35	17	24	22	1.95
46981958--46982002	23	1.9	24	90	4	74	42	11	24	22	1.86
46982081--46982111	16	1.9	16	93	0	53	41	0	22	35	1.54
46983496--46983540	20	2.2	20	88	0	63	35	13	2	48	1.54
46988901--46989107	53	3.8	54	78	1	209	20	24	17	37	1.94
46992622--46992788	46	3.6	45	78	13	178	27	26	20	24	1.99
46992622--46992793	93	1.8	93	91	2	283	27	27	20	24	1.99
46997605--46997710	28	3.9	27	78	16	112	46	16	16	19	1.85
47004884--47004959	34	2.2	34	88	0	107	31	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014913--47014970	28	2.2	27	88	11	86	50	18	15	15	1.79
47020067--47020133	20	3.3	20	95	4	118	34	19	10	35	1.86
47020067--47020122	11	5.5	11	75	16	66	33	19	10	35	1.87
47020067--47020139	9	7.4	10	73	17	64	35	19	9	35	1.84
47023016--47023128	53	2.3	50	83	10	135	30	28	16	24	1.97
47023042--47023196	52	3.0	51	76	11	145	30	28	15	25	1.96
47024534--47024643	43	2.6	43	80	8	125	26	20	22	30	1.98
47026060--47026231	46	3.7	45	76	13	170	22	19	27	30	1.98
47044916--47044947	5	6.6	5	92	7	57	81	0	0	18	0.70
47044917--47044947	9	3.3	9	95	4	53	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325