genome.fa.s3.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  146  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47051550--47051657	26	4.2	26	86	0	144	37	24	8	30	1.85
47051550--47051657	52	2.1	52	89	0	162	37	24	8	30	1.85
47055786--47055840	24	2.2	25	87	9	85	45	41	0	12	1.42
47056337--47056375	7	5.6	7	90	0	60	23	46	5	25	1.73
47057988--47058206	53	4.1	54	75	5	192	19	24	15	39	1.91
47061531--47061580	26	1.9	26	91	0	82	38	10	10	42	1.72
47068454--47068490	19	1.9	19	89	10	58	72	0	2	24	0.97
47071436--47071477	16	2.7	16	88	3	68	54	4	2	38	1.34
47071711--47071789	38	2.1	38	100	0	158	34	12	17	35	1.88
47079741--47079799	29	2.0	29	96	0	109	59	6	5	28	1.45
47080814--47080943	69	1.9	69	91	3	217	43	10	4	42	1.59
47086444--47086511	29	2.3	29	87	0	91	13	30	0	55	1.38
47087760--47087801	20	2.1	20	100	0	84	40	9	14	35	1.78
47095029--47095080	8	6.8	8	76	24	58	57	0	1	40	1.10
47095022--47095080	14	4.5	14	73	16	63	55	0	1	42	1.09
47095029--47095074	24	1.9	24	95	0	83	58	0	2	39	1.10
47097436--47097508	30	2.4	29	84	6	92	32	39	19	8	1.81
47097591--47097625	18	1.9	18	94	0	61	25	31	8	34	1.86
47098149--47098178	9	3.4	9	90	9	53	36	0	0	63	0.95
47101206--47101723	126	4.1	126	89	3	785	29	16	16	37	1.91
47101206--47101723	250	2.1	253	91	2	830	29	16	16	37	1.91
47101927--47101957	3	10.3	3	92	0	53	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47104395--47104440	14	3.2	14	77	22	51	65	0	2	32	1.05
47105176--47105235	28	2.1	28	81	6	68	50	1	5	43	1.34
47105194--47105242	15	3.4	15	70	18	50	38	2	4	55	1.31
47107216--47107250	4	9.0	4	93	6	63	51	0	0	48	1.00
47108189--47108345	54	2.7	58	80	14	171	53	3	1	42	1.25
47108967--47109003	19	1.9	19	94	0	65	64	5	0	29	1.15
47109239--47109368	63	2.1	63	97	0	242	43	13	16	26	1.85
47109894--47109977	25	3.2	25	73	12	78	51	16	7	25	1.70
47118005--47118041	10	3.7	10	92	7	58	37	10	18	32	1.86
47118011--47118061	21	2.4	21	86	0	66	35	11	21	31	1.90
47118109--47118180	25	3.0	24	80	13	76	29	22	22	26	1.99
47118372--47118454	31	2.7	31	83	3	107	28	15	25	30	1.96
47125930--47125980	21	2.4	21	90	0	75	37	11	19	31	1.88
47126026--47126097	25	2.9	25	95	0	126	27	23	20	27	1.99
47126028--47126124	25	4.0	24	84	9	74	28	21	21	27	1.99
47126316--47126398	31	2.7	31	87	3	116	28	16	25	28	1.97
47128566--47128624	27	2.2	27	87	6	84	49	20	13	16	1.80
47128576--47128636	27	2.3	26	85	5	77	45	22	13	18	1.83
47129034--47129081	18	2.7	18	86	0	69	20	16	14	47	1.82
47131049--47131086	20	1.9	20	88	0	58	36	18	2	42	1.64
47136053--47136136	26	3.2	26	98	0	159	32	4	26	36	1.77
47142361--47142461	28	3.6	28	73	6	107	27	34	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47142365--47142490	56	2.2	56	98	0	243	29	33	19	18	1.95
47142391--47142489	28	3.5	28	72	5	101	30	30	19	20	1.97
47142473--47142527	25	2.2	25	87	6	76	29	32	10	27	1.91
47142674--47142768	40	2.3	40	91	5	129	29	30	21	18	1.97
47142688--47142768	40	2.0	40	97	2	155	28	29	22	19	1.98
47146223--47146264	3	14.3	3	85	5	50	61	0	7	30	1.22
47148265--47148367	37	2.8	37	95	0	179	25	32	19	23	1.98
47148507--47148999	48	10.3	48	98	0	914	31	28	5	34	1.81
47152134--47152255	22	5.3	22	62	21	61	25	29	11	33	1.91
47152106--47152409	47	6.4	47	91	3	425	26	30	9	32	1.88
47154980--47155047	33	2.1	33	100	0	136	22	22	26	29	1.99
47157227--47157360	30	4.5	30	72	5	110	25	23	11	39	1.88
47157360--47157431	30	2.4	30	88	0	99	16	27	12	43	1.84
47159877--47159931	18	3.2	17	76	19	60	3	34	0	61	1.13
47160675--47160706	16	2.1	15	94	5	55	50	15	18	15	1.79
47160954--47161012	26	2.3	26	85	5	75	37	23	10	28	1.88
47161118--47161233	27	4.3	27	82	5	144	18	23	21	37	1.94
47161119--47161233	28	4.2	28	82	3	137	18	23	20	37	1.94
47161118--47161233	55	2.1	54	85	6	162	18	23	21	37	1.94
47163647--47163725	39	2.0	39	97	0	149	26	17	24	31	1.97
47165039--47165075	5	7.4	5	100	0	74	78	0	0	21	0.75
47170534--47170620	34	2.6	34	78	7	95	22	24	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47173694--47173793	6	16.3	6	73	15	80	48	14	17	21	1.81
47173688--47173793	43	2.5	42	83	6	131	48	14	16	21	1.81
47174011--47174061	27	1.9	26	84	4	66	35	19	27	17	1.94
47174306--47174529	27	8.3	27	82	3	229	24	18	18	38	1.93
47174306--47174529	54	4.1	54	85	2	261	24	18	18	38	1.93
47174309--47174529	81	2.7	81	86	0	300	24	19	18	38	1.93
47174511--47175031	27	19.3	27	77	8	210	32	9	20	38	1.84
47174563--47175064	81	6.2	81	80	3	519	31	9	20	38	1.84
47174620--47175064	27	16.5	27	84	0	557	31	9	19	38	1.84
47174647--47175064	54	7.7	54	91	1	658	31	9	19	38	1.84
47178778--47178875	35	2.7	37	87	12	150	37	10	16	35	1.82
47178778--47178868	19	4.9	19	92	8	161	37	10	15	36	1.83
47178847--47178904	22	2.7	23	78	7	59	37	5	15	41	1.70
47179158--47179193	18	1.9	19	88	5	56	30	0	0	69	0.89
47186206--47186253	24	2.0	24	100	0	96	41	12	0	45	1.42
47186206--47186248	14	3.4	14	75	24	58	44	11	0	44	1.40
47186213--47186254	12	3.5	12	76	23	52	35	16	0	47	1.47
47190738--47191612	45	20.1	45	67	17	332	32	17	24	25	1.97
47191210--47191400	78	2.4	78	89	3	312	33	18	23	24	1.97
47191430--47191595	88	1.9	89	91	1	271	30	15	28	25	1.96
47191965--47192018	17	3.3	15	80	19	56	37	11	14	37	1.82
47191971--47192034	17	3.6	17	85	8	83	39	14	12	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47191963--47192041	35	2.2	37	84	13	112	39	11	15	34	1.83
47192325--47192360	18	1.9	19	88	5	56	30	0	0	69	0.89
47195817--47195924	37	2.9	37	95	0	189	25	31	18	24	1.97
47196129--47196320	47	4.1	47	90	5	275	26	28	12	32	1.92
47196220--47196295	22	3.3	22	67	22	66	25	28	13	32	1.93
47199181--47199227	23	2.0	23	100	0	94	29	29	0	40	1.57
47199909--47199968	30	2.0	30	90	0	93	28	25	8	38	1.84
47211776--47211865	28	3.3	28	89	4	139	18	21	22	37	1.94
47211779--47211885	27	4.0	26	86	4	115	21	21	19	37	1.95
47217137--47217177	8	5.0	8	83	16	57	36	12	14	36	1.84
47217563--47217669	25	4.2	25	86	4	144	29	19	18	31	1.96
47221636--47221702	34	2.0	34	85	5	91	26	20	23	28	1.99
47223135--47223250	25	4.6	25	77	2	117	27	21	19	31	1.98
47223154--47223248	50	1.9	50	86	4	138	29	21	18	30	1.97
47225651--47225719	25	2.8	24	76	10	68	30	23	21	24	1.99
47237917--47237976	30	2.0	30	100	0	120	36	6	20	36	1.79
47238783--47238834	6	8.8	6	79	12	63	48	13	19	19	1.81
47238782--47238834	23	2.2	24	90	3	81	47	13	18	20	1.82
47238783--47238833	17	2.9	17	80	11	59	47	13	19	19	1.83
47239154--47239247	27	3.5	27	83	0	116	41	18	11	28	1.85
47239143--47239247	54	1.9	54	86	0	147	40	18	14	27	1.89
47243538--47243887	27	13.0	27	85	3	415	36	18	12	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47247424--47247617	50	3.9	50	86	1	246	28	24	19	26	1.99
47247433--47247617	101	1.8	99	87	2	271	29	24	18	27	1.98
47248393--47248453	30	2.0	30	90	0	95	27	22	6	42	1.78
47250321--47250384	28	2.3	28	83	0	74	18	17	37	26	1.93
47250718--47251012	27	11.0	27	78	2	297	36	21	10	31	1.87
47250699--47250974	134	2.1	134	85	5	371	37	18	10	33	1.85
47256313--47256456	26	5.5	26	86	3	182	37	7	23	31	1.83
47257109--47257159	22	2.3	21	80	6	57	27	9	13	49	1.74
47258376--47258494	39	3.1	38	83	7	150	31	3	23	41	1.71
47258376--47258513	39	3.5	39	81	7	111	31	4	23	40	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325