genome.fa.s3.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  139  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44988822--44989063	46	5.2	47	74	13	180	30	17	28	23	1.97
44988822--44989087	94	2.8	94	78	9	215	29	18	28	23	1.97
44989676--44989770	47	2.0	47	85	0	127	20	28	33	17	1.95
44992787--44992850	30	2.2	30	94	2	112	34	21	17	26	1.95
45002922--45002989	30	2.3	29	92	2	109	35	23	16	25	1.95
45007520--45007688	43	3.9	43	75	14	152	24	19	26	29	1.98
45007529--45007688	86	1.9	86	84	7	218	25	20	26	28	1.99
45028580--45028762	55	3.4	53	75	5	134	21	22	18	37	1.94
45033703--45033732	13	2.3	13	100	0	60	50	26	16	6	1.70
45042768--45042834	32	2.1	32	91	0	107	28	4	20	46	1.70
45047680--45047812	54	2.5	54	97	0	257	27	17	24	30	1.97
45047983--45048021	19	2.1	19	100	0	78	38	5	15	41	1.69
45049819--45050135	27	11.7	27	83	1	287	38	19	9	32	1.84
45049819--45050135	54	5.9	54	81	3	325	38	19	9	32	1.84
45049819--45050187	27	13.7	27	79	4	235	37	18	9	33	1.84
45050171--45050606	27	16.2	27	89	2	608	34	20	21	23	1.96
45051061--45051125	22	3.0	21	77	6	67	20	21	23	35	1.96
45051284--45051385	27	3.8	27	82	10	100	17	22	20	39	1.93
45051545--45051647	6	16.8	6	76	15	95	20	18	14	46	1.84
45051541--45051632	31	3.0	31	91	0	139	20	19	13	46	1.83
45057300--45057350	17	3.0	17	100	0	102	29	17	29	23	1.97
45059736--45059760	13	1.9	13	100	0	50	8	8	40	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45064291--45064384	47	2.0	47	100	0	188	40	19	14	25	1.90
45067050--45067074	13	1.9	13	100	0	50	32	4	24	40	1.73
45068165--45068327	43	3.8	43	75	9	145	24	15	28	31	1.96
45068223--45068327	42	2.5	42	81	4	131	24	17	29	28	1.97
45072840--45072913	37	2.0	37	97	0	139	39	5	10	44	1.62
45073905--45073967	27	2.4	27	81	2	74	34	25	4	34	1.77
45076088--45076360	46	6.0	47	79	13	261	23	24	15	36	1.93
45076093--45076363	92	3.0	90	84	8	313	23	23	15	36	1.93
45081332--45081597	46	6.0	46	85	7	352	22	24	15	38	1.92
45081511--45081586	38	2.0	38	97	0	143	23	27	18	30	1.98
45085639--45085694	24	2.3	25	75	9	62	50	30	0	19	1.48
45085839--45085890	9	5.8	9	95	0	86	23	9	28	38	1.86
45086050--45086074	12	2.1	12	100	0	50	16	24	36	24	1.94
45087098--45087187	41	2.2	40	84	5	110	34	1	7	56	1.35
45087119--45087213	41	2.3	41	81	3	102	36	4	7	51	1.49
45089432--45089485	24	2.3	24	90	3	83	20	20	18	40	1.91
45096315--45096428	43	2.7	42	78	2	129	31	17	22	28	1.97
45100970--45101003	16	2.1	16	94	0	59	8	5	29	55	1.54
45103678--45103727	21	2.5	20	81	15	59	56	2	4	38	1.30
45103683--45103793	30	3.7	29	74	12	91	59	0	6	33	1.29
45103681--45103794	10	11.4	10	72	15	69	60	0	6	32	1.27
45103747--45103805	10	5.8	10	83	15	61	67	0	8	23	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45103750--45103805	19	2.6	21	76	18	62	69	0	8	21	1.15
45105842--45105917	34	2.2	35	83	4	100	30	19	26	23	1.98
45111075--45111168	42	2.2	42	83	3	109	18	24	17	40	1.91
45111108--45111171	21	3.0	21	68	8	58	18	25	15	40	1.90
45111121--45111179	21	2.8	20	72	10	55	16	27	15	40	1.89
45111097--45111198	42	2.4	42	81	3	116	15	23	15	45	1.85
45112670--45112768	28	3.5	29	82	6	114	30	26	15	28	1.96
45120387--45120451	28	2.3	28	91	0	103	33	26	7	32	1.85
45120557--45120646	28	3.2	27	81	7	101	20	24	23	32	1.98
45120569--45120646	27	2.8	28	80	5	95	21	25	20	32	1.98
45127088--45127138	17	3.0	17	74	5	50	3	31	1	62	1.24
45128223--45128287	28	2.3	28	94	0	112	33	27	7	30	1.85
45128393--45128454	27	2.2	29	85	5	83	17	25	25	30	1.97
45128919--45128957	19	2.1	19	85	0	51	15	5	7	71	1.26
45131195--45131319	45	2.8	45	81	2	162	33	28	15	23	1.95
45134871--45134922	27	2.0	26	84	3	68	17	26	21	34	1.95
45134961--45135020	27	2.3	27	85	2	77	21	23	20	35	1.96
45134938--45134999	31	2.0	31	83	3	79	20	22	20	35	1.96
45139367--45139418	27	2.0	26	84	3	68	17	26	21	34	1.95
45139457--45139516	27	2.3	27	85	2	77	21	23	20	35	1.96
45139434--45139495	31	2.0	31	83	3	79	20	22	20	35	1.96
45146339--45146463	39	3.2	39	93	0	205	31	20	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45146338--45146492	78	2.0	76	82	5	186	30	21	27	21	1.98
45149753--45149850	27	3.5	28	90	2	135	26	13	28	31	1.94
45149781--45149863	27	3.0	27	87	5	96	30	12	25	32	1.92
45149753--45149864	28	4.0	27	83	6	98	28	12	25	33	1.92
45150519--45150554	18	2.0	18	100	0	72	22	16	22	38	1.93
45157067--45157164	27	3.5	28	87	2	126	25	13	28	32	1.93
45157095--45157177	27	3.0	27	84	5	87	28	12	25	33	1.92
45157067--45157178	28	4.0	27	81	6	89	27	12	25	33	1.92
45160521--45160690	46	3.6	46	80	8	184	22	29	20	27	1.98
45160521--45160792	94	2.9	94	78	10	281	23	28	19	28	1.98
45165176--45165336	56	2.9	56	81	3	175	31	23	17	27	1.97
45165189--45165346	28	5.6	28	73	5	131	33	23	17	25	1.96
45166272--45166339	30	2.2	31	84	2	93	42	11	19	26	1.85
45168591--45168691	49	2.1	47	83	7	134	29	15	7	46	1.74
45170420--45170560	27	5.2	27	82	11	164	36	24	22	17	1.95
45170420--45170563	54	2.7	54	91	2	218	36	24	22	16	1.94
45172158--45172239	26	3.2	26	96	0	146	36	24	7	31	1.83
45175896--45175954	29	2.0	29	83	0	73	22	10	32	35	1.87
45176277--45176323	23	2.0	23	91	0	76	14	14	31	38	1.87
45178809--45178847	19	2.0	20	90	5	62	33	15	0	51	1.44
45186398--45186501	41	2.5	43	73	9	106	33	26	15	24	1.95
45192485--45192546	31	1.9	32	90	6	99	41	16	9	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45193264--45193292	7	4.1	7	100	0	58	17	0	0	82	0.66
45193454--45193512	18	3.3	18	86	6	77	57	1	3	37	1.25
45193455--45193521	18	4.0	16	83	11	64	53	1	2	41	1.25
45193472--45193515	18	2.4	18	96	0	79	61	0	2	36	1.09
45193635--45193704	35	2.0	35	97	0	131	40	10	8	41	1.69
45196339--45196368	16	1.9	16	93	6	53	33	23	0	43	1.54
45196578--45196857	50	5.6	50	77	3	231	32	26	15	25	1.95
45196629--45196810	101	1.8	101	86	0	265	30	25	17	26	1.97
45204747--45204963	46	4.6	48	79	8	205	24	28	17	29	1.98
45210176--45210232	15	3.9	15	86	2	80	35	0	14	50	1.42
45210147--45210230	30	2.9	28	83	11	91	32	1	14	52	1.49
45210627--45210664	20	1.9	20	94	0	67	15	28	26	28	1.96
45213329--45213608	101	2.7	101	80	7	305	35	15	9	39	1.79
45214892--45215000	36	3.2	36	64	19	90	44	3	5	45	1.44
45214886--45215014	64	2.0	64	96	0	208	47	4	4	43	1.45
45215087--45215129	22	1.9	23	85	4	61	58	4	0	37	1.19
45215416--45215514	42	2.3	43	77	16	109	35	1	1	62	1.09
45215437--45215480	19	2.4	19	82	14	56	38	0	0	61	0.96
45215442--45215540	21	4.3	23	67	21	66	35	1	2	61	1.14
45215421--45215546	32	3.7	34	77	15	127	34	0	1	63	1.10
45215428--45215505	21	3.6	23	76	13	67	34	1	1	62	1.11
45227293--45227414	43	2.9	42	80	7	140	28	24	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45234352--45234522	46	3.7	46	76	4	182	23	29	19	27	1.98
45248208--45248379	79	2.2	80	84	7	217	27	20	25	26	1.99
45248155--45248379	40	5.7	40	84	6	237	27	21	25	25	1.99
45248155--45248385	119	1.9	120	82	9	285	27	21	25	25	1.99
45256618--45256652	17	2.1	17	88	0	52	25	11	28	34	1.91
45259342--45259385	20	2.2	20	91	0	70	36	31	2	29	1.70
45259471--45259592	43	2.9	41	75	11	111	27	22	14	34	1.94
45262156--45262190	17	2.1	17	100	0	70	40	25	5	28	1.78
45273558--45273600	8	5.4	8	86	8	61	60	0	0	39	0.97
45273558--45273619	25	2.5	25	78	19	67	56	0	3	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325