genome.fa.s3.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  130  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41548570--41548604	17	2.1	17	94	0	61	31	37	11	20	1.88
41551395--41551472	37	2.1	37	85	0	102	26	30	16	25	1.97
41551658--41551891	49	5.0	42	96	2	225	30	28	8	32	1.88
41551591--41551913	47	6.8	47	93	1	520	29	30	8	32	1.87
41554877--41554992	25	4.6	25	91	0	178	31	16	30	21	1.95
41559996--41560103	54	2.0	54	100	0	216	29	3	22	44	1.70
41561936--41562016	33	2.5	33	76	11	87	58	1	1	39	1.14
41562600--41562633	17	1.9	18	88	5	52	41	0	23	35	1.55
41566213--41566260	24	1.9	26	87	8	73	35	31	12	20	1.90
41571182--41571235	24	2.2	24	90	0	90	24	12	14	48	1.79
41575405--41575439	17	2.1	17	88	0	52	34	0	2	62	1.10
41575495--41575540	20	2.5	18	83	13	58	32	2	0	65	1.05
41575506--41575538	10	3.3	10	84	16	50	36	3	0	60	1.12
41575509--41575555	20	2.3	21	82	13	55	34	6	0	59	1.23
41587770--41587935	84	2.0	85	85	1	226	34	17	20	27	1.95
41587854--41588170	119	2.7	119	91	1	492	33	18	20	28	1.96
41588092--41588350	83	3.1	83	90	2	396	32	18	20	28	1.96
41589887--41590021	17	7.7	17	68	21	57	33	1	3	61	1.23
41589977--41590024	20	2.5	18	80	12	60	33	2	0	64	1.05
41592269--41592676	48	8.5	48	95	0	726	34	6	28	30	1.82
41592850--41592942	37	2.5	37	92	0	159	27	20	27	23	1.99
41594230--41594358	40	3.2	40	96	0	231	20	23	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41594387--41594518	29	4.6	29	81	8	128	21	16	31	31	1.95
41594387--41594518	57	2.3	57	84	5	160	21	16	31	31	1.95
41598166--41598454	47	6.1	47	88	3	380	32	11	29	26	1.91
41598428--41598564	46	3.0	46	89	0	202	34	8	31	25	1.86
41602002--41602360	48	7.5	48	92	1	605	34	6	28	30	1.83
41602530--41602626	37	2.6	37	93	0	158	25	20	28	24	1.99
41604427--41604468	9	4.2	11	82	17	56	66	0	0	33	0.92
41604425--41604468	18	2.3	19	88	11	63	65	0	0	34	0.93
41604570--41604623	6	8.7	6	76	15	56	74	3	1	20	1.07
41604567--41604647	31	2.6	32	80	16	100	69	2	2	25	1.14
41605387--41605415	15	1.9	15	100	0	58	48	13	10	27	1.75
41609476--41609508	17	1.9	17	93	0	57	57	9	27	6	1.53
41609867--41609940	7	10.3	7	92	5	121	27	1	1	70	1.04
41610256--41610346	37	2.5	37	90	0	137	23	15	50	10	1.75
41610442--41610481	15	2.8	14	81	7	53	50	27	2	20	1.61
41610605--41610736	48	2.8	46	80	11	158	21	0	28	49	1.50
41610748--41610918	41	4.2	41	93	3	283	19	21	23	35	1.96
41610761--41610957	82	2.4	81	85	7	242	20	20	22	36	1.95
41622421--41622454	16	2.1	17	88	5	52	29	26	5	38	1.80
41624753--41624875	46	2.7	43	81	7	120	28	18	28	24	1.98
41624746--41625019	146	1.9	140	81	7	327	28	17	29	24	1.98
41633105--41633213	56	1.9	56	86	0	155	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41643847--41644372	49	10.9	49	94	2	883	32	8	29	29	1.86
41643847--41644372	96	5.5	97	94	2	870	32	8	29	29	1.86
41643847--41644372	145	3.6	145	95	1	907	32	8	29	29	1.86
41645289--41645699	48	8.6	48	82	0	482	28	27	16	27	1.97
41645284--41645699	96	4.3	96	92	0	654	28	27	16	28	1.97
41669498--41669584	43	2.0	44	95	2	158	36	24	13	25	1.92
41669498--41669564	24	3.0	24	64	18	63	35	23	13	26	1.92
41677055--41677226	79	2.2	78	82	7	204	25	21	28	25	1.99
41677002--41677224	40	5.6	39	77	7	189	25	21	27	25	1.99
41677082--41677259	79	2.2	80	82	3	200	25	22	28	23	1.99
41683455--41683505	25	2.0	25	96	0	93	49	9	15	25	1.75
41684716--41684756	22	1.9	22	90	5	66	12	43	26	17	1.84
41686868--41687015	73	2.0	73	89	0	224	32	16	22	28	1.96
41689595--41689634	21	2.0	21	85	5	55	22	27	35	15	1.94
41700172--41700208	17	2.1	19	85	10	51	51	13	0	35	1.41
41702355--41702476	60	2.0	61	91	1	201	52	11	16	19	1.74
41704867--41705176	46	6.6	46	76	11	215	28	18	29	23	1.98
41710338--41710480	49	2.9	49	82	1	178	32	18	22	27	1.97
41710346--41710472	25	5.1	24	73	9	78	32	18	23	25	1.97
41711839--41712330	3	166.3	3	68	10	199	28	9	2	60	1.39
41712028--41712202	93	1.9	93	90	0	278	27	8	2	61	1.37
41712321--41712409	17	4.8	18	69	27	62	25	8	0	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41712387--41712483	25	3.7	26	67	29	64	29	5	5	59	1.41
41718691--41719295	49	12.6	49	93	2	955	33	8	29	28	1.86
41718691--41719295	96	6.3	97	92	3	967	33	8	29	28	1.86
41718691--41719295	145	4.2	145	95	1	1020	33	8	29	28	1.86
41721428--41721502	38	2.0	38	86	5	107	30	18	26	24	1.98
41721556--41721796	40	6.1	40	91	0	331	26	21	27	25	1.99
41725221--41725727	47	10.6	49	93	2	804	33	8	29	28	1.86
41725221--41725727	241	2.1	239	94	1	892	33	8	29	28	1.86
41730019--41730139	64	1.9	64	96	0	224	29	16	16	37	1.91
41730210--41730818	44	13.8	43	69	14	289	31	16	25	26	1.97
41730222--41730504	133	2.1	133	93	1	478	31	16	28	24	1.96
41730355--41730829	175	2.7	175	88	2	711	31	16	26	26	1.97
41730781--41731336	44	12.9	43	72	6	388	30	19	22	27	1.98
41730779--41731326	130	4.2	130	89	0	812	29	20	22	27	1.98
41730779--41731336	86	6.4	87	71	7	325	30	19	22	27	1.98
41731660--41731948	44	6.4	45	71	16	143	33	21	19	25	1.97
41731616--41731948	182	1.8	182	87	5	494	33	21	19	26	1.97
41731653--41731908	138	1.8	139	84	5	349	32	22	19	25	1.97
41731954--41732013	28	2.1	28	90	0	93	38	18	33	10	1.84
41732164--41732210	11	4.2	11	83	2	58	57	38	0	4	1.18
41733314--41733618	3	101.7	3	67	12	108	28	10	1	59	1.39
41733311--41733360	25	1.9	26	88	8	75	30	10	0	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41733387--41733424	19	2.1	18	90	5	58	26	7	0	65	1.19
41733389--41733452	25	2.5	26	80	7	69	25	7	1	65	1.28
41733401--41733444	13	3.5	13	78	3	54	27	6	0	65	1.17
41733430--41733551	58	2.2	55	82	10	149	27	12	1	59	1.43
41733477--41733588	54	2.1	52	82	9	129	27	10	1	59	1.41
41733686--41733745	26	2.4	25	81	10	68	25	6	0	68	1.14
41733728--41733824	25	3.7	26	67	29	64	29	5	5	59	1.41
41738736--41738910	46	3.8	45	75	7	172	29	29	19	21	1.98
41738744--41738914	93	1.8	93	89	0	270	29	29	19	21	1.98
41738741--41738930	46	4.1	46	68	18	108	29	28	19	22	1.98
41743588--41743628	14	2.8	15	82	14	50	51	2	4	41	1.36
41745649--41745744	32	3.1	30	71	21	81	33	14	12	39	1.84
41752033--41752071	18	2.1	18	85	4	51	12	10	0	76	1.01
41752908--41752945	20	1.9	20	89	10	60	84	0	13	2	0.73
41752908--41752943	12	2.8	13	91	4	56	86	0	11	2	0.68
41753918--41754008	38	2.3	38	96	3	164	56	8	0	35	1.31
41757159--41757202	20	2.2	20	83	4	52	27	31	13	27	1.94
41760639--41760904	27	9.9	27	73	10	80	36	21	9	31	1.86
41760651--41760769	54	2.2	54	83	3	141	30	25	8	36	1.85
41760907--41760963	27	2.1	28	80	6	64	42	12	8	36	1.74
41761891--41761960	25	2.8	25	91	0	104	24	27	24	24	2.00
41762108--41762197	42	2.1	42	97	0	171	32	14	20	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41765709--41765739	9	3.3	9	95	4	53	16	0	22	61	1.34
41766518--41766711	49	3.9	50	83	2	241	27	19	26	26	1.99
41768309--41768334	13	2.0	13	100	0	52	46	15	0	38	1.46
41783887--41784071	40	4.6	39	81	9	189	25	21	27	25	2.00
41783887--41784071	79	2.3	81	82	9	220	25	21	27	25	2.00
41783943--41784104	79	2.1	79	81	6	186	26	19	27	25	1.99
41793923--41793948	13	2.0	13	100	0	52	46	23	7	23	1.78
41797481--41797546	30	2.2	30	94	0	114	56	3	12	28	1.51
41798519--41798602	39	2.2	38	82	6	98	22	19	27	30	1.98
41804509--41804552	20	2.1	21	84	12	56	61	4	9	25	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325