genome.fa.s3.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  162  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52033043--52033099	28	2.0	28	100	0	114	24	3	21	50	1.64
52045239--52045338	48	2.1	48	96	0	182	18	18	22	42	1.90
52061410--52061501	39	2.3	39	85	5	123	23	28	22	25	2.00
52061391--52061554	40	4.1	39	76	14	149	23	27	23	25	2.00
52371089--52371166	37	2.1	36	86	6	104	25	30	17	25	1.97
52371285--52371811	47	11.3	47	95	1	907	29	29	8	32	1.87
52371285--52371811	233	2.2	233	94	1	912	29	29	8	32	1.87
52376309--52376350	10	3.4	13	78	21	54	33	0	0	66	0.92
52376193--52376380	98	1.9	98	91	0	304	36	4	5	53	1.45
52376586--52376778	29	6.1	31	66	23	91	48	13	3	34	1.61
52376525--52376847	74	4.6	74	80	10	371	47	13	3	35	1.59
52376542--52376804	9	28.6	9	69	13	124	47	14	3	34	1.61
52376644--52376787	56	2.6	56	94	0	243	46	13	4	35	1.63
52376588--52376847	130	2.0	130	93	3	443	48	13	3	35	1.59
52380571--52380638	29	2.4	29	95	2	120	39	2	23	33	1.70
52381904--52381932	14	2.1	14	93	6	51	34	0	6	58	1.25
52382349--52382416	21	3.2	21	79	4	75	32	20	47	0	1.51
52384881--52384919	19	2.1	19	85	0	51	38	2	2	56	1.27
52389223--52389283	30	2.0	30	83	0	77	31	22	8	37	1.84
52393822--52393936	18	6.3	18	71	4	88	40	17	9	33	1.82
52394138--52394265	53	2.4	53	85	3	177	42	20	18	17	1.89
52394300--52394324	12	2.1	12	100	0	50	40	20	24	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52396081--52396198	53	2.2	53	84	0	164	18	17	21	42	1.89
52396326--52396375	18	2.7	19	75	6	57	32	8	10	50	1.65
52396401--52396515	18	6.3	18	77	4	115	34	6	16	41	1.75
52396403--52396505	36	2.9	36	86	1	127	36	6	15	40	1.74
52398784--52398826	22	2.0	22	100	0	86	23	23	13	39	1.90
52402482--52402566	26	3.4	25	75	11	84	61	0	10	28	1.29
52403988--52404200	68	3.1	68	94	0	363	30	22	21	25	1.99
52404162--52404242	42	1.9	42	97	0	153	35	24	18	20	1.95
52404093--52404310	110	2.0	110	94	0	382	32	23	20	23	1.98
52404203--52404696	68	7.4	68	88	5	751	29	22	21	26	1.99
52404024--52404570	178	3.0	178	85	5	675	30	22	21	25	1.99
52404203--52404696	192	2.5	198	86	7	712	29	22	21	26	1.99
52404203--52404692	260	1.9	260	94	0	863	30	22	21	25	1.99
52404899--52405024	65	1.9	65	93	0	216	36	12	17	33	1.88
52406708--52406741	8	4.6	7	89	7	50	0	2	14	82	0.79
52406698--52406773	9	8.9	8	75	16	55	1	6	13	78	0.99
52409422--52409481	30	2.0	30	93	0	102	38	25	21	15	1.92
52410140--52410459	129	2.4	132	75	7	305	36	19	17	26	1.94
52413983--52414041	20	3.1	18	75	13	57	52	0	5	42	1.23
52414288--52414341	18	3.1	17	78	10	56	33	0	1	64	1.04
52417188--52417243	28	2.0	28	100	0	112	50	14	21	14	1.78
52419581--52419756	60	2.9	60	83	7	189	47	14	14	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52423509--52423833	96	3.4	96	79	0	337	23	29	19	28	1.98
52423510--52423843	48	7.0	48	75	5	291	24	29	18	27	1.98
52425251--52425520	49	5.7	49	76	15	248	23	30	19	27	1.98
52425251--52425519	94	2.8	92	79	11	296	23	30	19	26	1.98
52428575--52428689	48	2.4	48	85	0	149	26	16	29	26	1.97
52428735--52428916	48	3.8	47	76	17	187	26	20	29	22	1.99
52428565--52428850	157	1.8	158	85	5	409	25	18	30	25	1.98
52428700--52428908	96	2.2	94	85	5	267	24	21	30	23	1.99
52436354--52436630	48	5.8	48	77	4	236	27	17	29	25	1.97
52436363--52436635	96	2.8	95	81	4	271	28	18	28	24	1.98
52436353--52436635	144	2.0	144	83	2	363	27	17	28	25	1.98
52437846--52437966	42	2.8	43	79	6	138	34	26	15	23	1.95
52451132--52451170	21	1.9	20	84	5	51	71	5	5	17	1.23
52467563--52467712	42	3.5	42	86	3	203	30	16	24	30	1.96
52470562--52470654	45	2.1	45	97	0	177	19	16	20	44	1.87
52472589--52472706	50	2.4	50	91	2	184	27	19	23	28	1.98
52481168--52481392	40	5.7	40	85	5	278	24	22	27	26	2.00
52481168--52481392	79	2.8	79	81	7	267	24	22	27	26	2.00
52481207--52481425	80	2.8	79	82	8	214	26	21	26	25	1.99
52481168--52481425	119	2.2	119	79	6	265	25	21	27	25	2.00
52489057--52489280	40	5.7	40	85	6	287	24	22	27	25	2.00
52489057--52489280	78	2.8	80	83	8	278	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52489061--52489313	80	3.2	77	80	9	244	26	21	27	24	1.99
52492108--52492589	48	10.0	48	92	0	775	36	5	25	31	1.80
52492719--52492832	37	3.1	37	94	2	194	24	18	31	25	1.97
52494588--52494617	13	2.2	14	94	5	53	40	13	0	46	1.43
52498462--52498496	17	2.1	17	100	0	70	60	17	0	22	1.37
52499744--52499824	42	2.0	42	83	9	105	18	38	20	22	1.94
52514930--52515000	27	2.6	27	81	0	79	43	19	5	30	1.74
52514985--52515135	27	5.6	27	89	3	214	36	19	17	26	1.94
52515118--52515322	27	7.6	27	80	7	143	39	19	10	31	1.85
52514930--52515322	54	7.3	54	74	10	218	38	18	12	30	1.88
52515336--52515424	27	3.3	27	83	0	106	34	23	5	35	1.79
52515407--52515458	27	1.9	27	84	0	68	44	19	7	28	1.78
52515414--52515488	27	2.8	27	87	4	98	40	20	8	32	1.81
52515471--52515809	27	12.6	27	88	0	489	34	20	20	24	1.97
52514931--52515759	81	10.2	81	74	7	334	36	19	14	29	1.92
52516476--52516577	27	3.8	27	87	5	134	18	23	21	36	1.95
52516737--52516833	6	15.8	6	68	16	56	19	17	15	47	1.83
52516714--52516824	31	3.5	31	85	1	141	19	17	12	50	1.77
52520416--52520455	20	2.0	20	85	4	55	50	2	12	35	1.54
52522766--52522846	28	2.9	28	90	0	117	33	33	6	27	1.82
52522834--52522930	40	2.4	40	87	0	140	31	28	19	19	1.96
52525018--52525059	21	2.0	22	85	4	59	16	30	28	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52529723--52529947	40	5.7	40	83	1	231	24	27	22	25	2.00
52537885--52538080	40	4.9	40	86	1	227	24	28	23	23	2.00
52537884--52538109	40	5.7	40	83	3	226	24	28	22	24	2.00
52537864--52538109	80	3.1	80	79	5	250	25	27	23	24	2.00
52538805--52539118	46	6.7	45	76	12	171	23	30	19	27	1.98
52538805--52539074	46	5.7	48	75	11	222	23	30	19	27	1.98
52545945--52546177	47	5.0	47	89	0	340	32	11	29	26	1.91
52546017--52546092	22	3.3	22	69	16	73	31	13	30	25	1.93
52546155--52546341	48	3.8	48	87	8	286	36	6	25	31	1.83
52546156--52546341	100	1.9	96	90	6	293	36	6	25	30	1.83
52546487--52546631	37	3.9	37	93	1	229	25	19	29	25	1.98
52549432--52549609	27	6.6	27	79	3	115	28	28	16	26	1.97
52549432--52549609	54	3.3	55	80	10	204	28	28	16	26	1.97
52549453--52549608	82	1.9	81	85	3	215	28	28	16	26	1.97
52557335--52557512	27	6.6	27	79	3	115	28	28	16	26	1.97
52557335--52557512	54	3.3	55	80	10	204	28	28	16	26	1.97
52557356--52557511	82	1.9	81	85	3	215	28	28	16	26	1.97
52558733--52558765	15	2.2	15	100	0	66	12	24	0	63	1.28
52559935--52559973	10	4.0	10	83	6	53	41	12	0	46	1.42
52569646--52569693	23	2.1	23	96	0	87	41	25	14	18	1.88
52570115--52570159	17	2.6	17	82	6	56	48	2	2	46	1.26
52570115--52570165	18	2.9	18	82	11	52	49	1	1	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52570287--52570336	23	2.2	23	85	7	66	40	2	0	58	1.10
52571019--52571058	17	2.2	20	86	13	59	75	2	5	17	1.10
52571927--52572002	36	2.1	37	80	11	86	56	6	0	36	1.25
52579763--52579983	40	5.6	40	92	2	340	26	23	27	21	1.99
52587859--52588079	40	5.6	40	92	2	340	26	23	27	21	1.99
52595968--52596151	40	4.6	40	82	8	205	25	22	28	24	1.99
52596020--52596174	79	2.0	79	83	7	199	25	21	27	25	1.99
52601798--52601855	29	2.0	29	90	6	91	24	31	18	25	1.98
52601751--52601901	75	2.0	76	84	8	202	21	29	20	28	1.98
52601827--52601996	46	3.7	44	74	12	153	22	27	19	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325