genome.fa.s3.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  154  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49321008--49321068	31	2.0	31	100	0	122	27	19	9	42	1.83
49326289--49326417	49	2.6	49	85	3	170	20	27	23	28	1.99
49326438--49326652	46	4.6	47	73	10	154	25	27	19	27	1.98
49326477--49326649	94	1.8	93	81	7	215	26	28	18	26	1.98
49336548--49336678	56	2.3	56	88	5	185	23	14	25	35	1.93
49338661--49338784	51	2.4	51	83	2	151	29	30	14	25	1.95
49340418--49340455	19	2.0	20	85	15	53	39	23	0	36	1.55
49340728--49340855	47	2.8	46	82	15	165	28	26	21	23	1.99
49340684--49340855	93	1.8	93	90	2	274	29	27	20	22	1.98
49340682--49340852	46	3.7	45	79	13	179	29	27	20	22	1.98
49347537--49347574	19	2.0	20	85	15	53	39	23	0	36	1.55
49347803--49347971	92	1.8	92	92	2	286	28	28	21	21	1.98
49347798--49347968	45	3.8	45	78	14	197	29	27	21	21	1.98
49373460--49373516	27	2.1	27	83	6	71	26	17	17	38	1.92
49373861--49373900	18	2.2	18	90	0	62	22	27	12	37	1.90
49378070--49378205	56	2.4	56	93	0	227	27	16	24	32	1.96
49392404--49392490	27	3.2	28	88	3	133	33	20	24	21	1.97
49392380--49392490	27	4.1	26	83	5	123	35	19	23	21	1.96
49392380--49392490	55	2.1	53	86	6	152	35	19	23	21	1.96
49395076--49395295	46	4.7	47	78	8	175	25	29	17	27	1.97
49394928--49395290	47	7.7	48	75	12	201	25	28	18	26	1.98
49399575--49399915	56	6.2	56	85	6	432	33	22	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49399872--49400054	43	4.3	43	84	4	226	31	25	15	27	1.95
49412567--49412611	15	3.0	15	76	0	54	11	15	13	60	1.60
49414970--49415086	43	2.8	42	78	2	135	31	16	23	28	1.96
49416850--49416888	18	2.2	18	90	9	62	38	28	10	23	1.87
49420592--49420734	72	2.0	72	94	0	250	23	26	18	31	1.97
49432314--49432382	31	2.2	31	84	5	86	18	30	30	20	1.97
49434034--49434183	67	2.2	67	81	8	171	32	17	28	21	1.96
49434058--49434241	67	2.8	64	77	8	194	29	17	29	22	1.97
49439649--49439758	43	2.6	42	84	5	150	30	18	23	27	1.97
49442350--49442476	46	2.7	47	85	4	159	25	29	16	29	1.97
49446248--49446579	48	6.9	48	80	4	330	24	29	18	27	1.98
49446248--49446565	96	3.3	96	83	2	372	23	29	19	27	1.98
49447774--49447922	56	2.6	58	81	10	182	29	17	21	31	1.96
49450330--49450402	37	2.0	37	88	0	110	23	17	24	34	1.96
49451800--49451881	39	2.1	39	93	0	137	31	19	6	42	1.76
49455170--49455316	72	2.0	72	98	0	285	36	22	9	31	1.86
49455328--49455607	51	5.5	51	79	4	183	29	28	16	25	1.96
49455422--49455564	50	2.8	51	82	1	171	30	28	17	23	1.97
49462886--49463194	47	6.6	47	95	0	519	33	8	30	28	1.86
49464661--49464779	40	3.0	40	90	2	177	24	19	23	32	1.97
49467766--49468301	48	11.0	48	90	4	831	36	7	25	30	1.83
49467766--49468298	196	2.7	192	91	3	834	36	7	25	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49467766--49468301	148	3.7	144	91	3	831	36	7	25	30	1.83
49468448--49468592	37	3.9	37	94	0	245	23	17	31	26	1.97
49469758--49469783	12	2.2	12	100	0	52	19	42	30	7	1.79
49470074--49470133	28	2.1	28	90	0	93	31	1	18	48	1.58
49476215--49476307	40	2.3	40	88	0	132	26	19	22	31	1.98
49476215--49476349	40	3.4	39	82	4	119	25	20	23	30	1.98
49479340--49479425	45	1.9	45	92	4	147	22	13	27	36	1.92
49482983--49483124	40	3.6	40	93	2	225	26	26	23	23	2.00
49491026--49491247	40	5.6	40	92	1	349	26	25	23	24	2.00
49495447--49495476	3	10.0	3	100	0	60	66	0	0	33	0.92
49497783--49497863	40	2.0	40	95	0	144	27	12	11	49	1.74
49500442--49500482	22	1.9	22	90	5	66	9	41	29	19	1.83
49504683--49504785	40	2.6	40	92	0	161	24	12	13	49	1.77
49506555--49506581	13	2.1	13	100	0	54	48	0	7	44	1.31
49507375--49507422	25	1.9	25	82	0	60	60	0	2	37	1.09
49507389--49507436	21	2.2	20	75	13	51	52	2	0	45	1.12
49507522--49507555	17	1.9	18	88	5	52	61	0	0	38	0.96
49507523--49507564	22	2.0	22	85	4	59	59	0	0	40	0.97
49509311--49509350	20	2.0	20	100	0	80	45	0	20	35	1.51
49515059--49515243	79	2.3	81	85	7	245	25	27	22	24	2.00
49515059--49515243	40	4.7	40	80	7	216	25	27	22	24	2.00
49531455--49531576	22	5.3	22	62	21	61	25	29	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49531427--49531683	47	5.4	47	88	3	356	27	30	8	33	1.87
49538186--49538529	47	7.3	47	87	2	487	32	9	30	27	1.88
49538187--49538508	94	3.4	94	93	0	538	32	10	30	26	1.90
49538428--49538501	22	3.2	22	64	17	60	32	10	31	25	1.90
49550538--49550562	13	1.9	13	100	0	50	24	36	40	0	1.55
49552486--49552510	11	2.3	11	100	0	50	32	0	8	60	1.26
49563349--49563379	15	2.1	15	93	0	53	64	19	6	9	1.45
49566491--49566745	39	6.5	39	94	3	417	29	29	22	18	1.97
49566491--49566745	115	2.2	117	91	5	417	29	29	22	18	1.97
49570649--49570715	25	2.8	24	78	17	75	26	16	23	32	1.96
49570659--49570715	25	2.3	25	87	6	80	28	15	28	28	1.96
49570659--49570728	25	2.8	25	84	0	77	25	20	24	30	1.99
49570930--49571225	27	11.0	27	86	2	371	25	20	18	36	1.95
49571216--49571346	53	2.5	54	82	6	160	32	7	19	40	1.80
49571246--49571395	80	1.9	80	84	5	205	28	8	21	42	1.81
49571230--49571422	27	7.2	26	77	8	163	30	8	20	40	1.82
49571415--49571570	27	5.8	27	86	1	197	37	8	23	30	1.84
49571415--49571570	54	2.9	54	90	0	233	37	8	23	30	1.84
49571415--49571595	27	6.7	27	85	1	175	36	8	23	31	1.85
49571415--49571595	81	2.2	80	83	0	227	36	8	23	31	1.85
49573693--49573771	31	2.5	31	97	0	149	26	25	18	29	1.98
49573985--49574031	25	1.9	25	91	4	78	29	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49573992--49574057	25	2.6	25	85	0	78	30	21	24	24	1.99
49574264--49574504	27	9.0	27	87	1	299	24	19	19	36	1.95
49574492--49574647	27	5.9	27	75	12	90	29	10	19	39	1.86
49574496--49574647	80	1.9	80	82	8	193	28	10	19	40	1.85
49574545--49574687	53	2.7	53	82	11	177	27	9	23	38	1.87
49574545--49574687	27	5.3	26	80	11	157	27	9	23	38	1.87
49574670--49574841	27	6.4	26	81	4	83	37	8	23	30	1.84
49574663--49574848	81	2.3	80	78	4	194	38	7	23	30	1.83
49574692--49574841	27	5.6	27	88	0	210	38	7	23	30	1.82
49574692--49574873	81	2.2	81	82	0	211	37	7	23	31	1.82
49574709--49574873	54	3.1	54	84	0	204	38	7	23	30	1.82
49576595--49576702	26	4.2	26	90	0	153	39	18	15	25	1.90
49576751--49576902	65	2.3	65	83	0	187	34	19	22	23	1.97
49578090--49578117	6	4.7	6	100	0	56	53	17	0	28	1.44
49579064--49579114	22	2.3	22	93	0	93	21	11	29	37	1.89
49582220--49582259	19	2.0	21	85	9	57	35	0	25	40	1.56
49582259--49582702	90	4.8	93	90	5	661	32	7	29	29	1.86
49582259--49582702	46	9.6	47	90	5	665	32	7	29	29	1.86
49584935--49585172	40	6.1	40	91	4	398	23	21	28	26	1.99
49584935--49585172	77	3.1	79	93	5	405	23	21	28	26	1.99
49584935--49585281	117	2.9	117	84	10	409	23	21	28	26	1.99
49585196--49585294	36	2.6	39	80	6	114	24	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49585057--49585289	131	1.8	130	85	6	330	24	21	27	26	1.99
49588861--49589310	47	9.6	47	91	3	685	32	8	29	29	1.86
49593678--49593723	24	2.0	23	91	4	74	34	28	23	13	1.92
49593679--49593731	24	2.2	24	86	3	72	37	26	22	13	1.91
49596464--49596495	15	2.1	15	94	0	55	59	6	6	28	1.46
49600074--49600213	27	5.2	27	84	6	178	35	22	24	18	1.96
49600074--49600213	54	2.6	54	90	2	228	35	22	24	18	1.96
49600319--49600381	26	2.3	26	83	5	72	30	11	23	34	1.90
49601820--49601926	26	4.1	26	95	4	198	34	27	7	30	1.84
49604585--49604638	27	2.0	27	92	3	92	40	5	16	37	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325