genome.fa.s3.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  142  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45843347--45843420	29	2.6	29	86	4	96	25	31	16	27	1.96
45852853--45852922	27	2.6	26	95	2	95	31	28	12	27	1.93
45852853--45852950	28	3.5	28	90	2	135	31	28	13	26	1.94
45853397--45853423	12	2.2	12	100	0	54	40	0	7	51	1.30
45862109--45862141	16	2.1	16	100	0	66	18	24	24	33	1.97
45863168--45863315	43	3.4	43	81	5	131	27	22	25	24	2.00
45863204--45863332	43	3.0	43	80	1	152	28	21	27	22	1.99
45863309--45863413	40	2.6	40	73	1	102	27	20	28	23	1.99
45871216--45871243	3	9.3	3	100	0	56	67	32	0	0	0.91
45872375--45872424	19	2.9	18	80	11	52	40	0	2	58	1.10
45874948--45875168	80	2.8	80	80	7	202	27	27	20	24	1.99
45874988--45875168	80	2.3	80	83	9	219	27	27	20	23	1.99
45874985--45875168	40	4.6	40	81	7	196	28	27	20	23	1.99
45877421--45877499	39	2.0	39	97	0	149	16	15	26	41	1.88
45879886--45879968	26	3.2	26	92	0	148	32	6	25	36	1.80
45881559--45881717	27	5.9	27	84	10	193	18	25	22	33	1.97
45881556--45881717	54	3.0	54	92	2	256	18	25	22	33	1.97
45881559--45881717	81	2.0	80	85	6	214	18	25	22	33	1.97
45892331--45892548	40	5.5	40	90	2	307	24	28	24	22	1.99
45901858--45901916	29	2.0	29	100	0	118	37	13	16	32	1.88
45903744--45903839	31	3.2	29	80	5	93	46	7	3	42	1.47
45909210--45909264	28	2.0	28	85	0	74	30	23	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45909209--45909271	28	2.2	28	80	0	72	31	25	6	36	1.81
45917920--45918595	47	14.4	47	92	0	1073	32	8	30	28	1.86
45927304--45927593	48	6.0	48	75	6	255	29	16	26	27	1.97
45927308--45927586	98	2.9	97	82	3	330	29	17	26	27	1.97
45928784--45928822	21	1.9	21	89	5	62	10	41	30	17	1.83
45942319--45942397	26	3.0	27	77	9	99	50	1	7	40	1.39
45943502--45943896	54	7.3	54	75	8	286	36	13	20	29	1.91
45943525--45943895	162	2.3	162	79	7	378	37	13	20	28	1.90
45943502--45943949	54	8.3	54	75	6	264	37	12	20	28	1.90
45943536--45943982	108	4.1	108	79	5	375	38	12	20	28	1.90
45948273--45948390	40	3.0	40	81	5	157	27	28	20	23	1.99
45954233--45954382	40	3.8	40	84	5	214	26	28	22	22	1.99
45956648--45956816	43	4.0	42	77	6	151	36	25	14	23	1.93
45962115--45962290	46	3.8	46	79	12	207	19	21	30	28	1.98
45962111--45962283	93	1.9	93	95	0	310	20	21	30	27	1.98
45965193--45965270	14	5.4	14	77	6	75	10	17	12	58	1.61
45967643--45967818	46	3.8	46	77	10	187	20	21	29	28	1.98
45967639--45967811	93	1.9	93	91	0	283	20	21	30	27	1.98
45975772--45975940	43	4.0	41	77	12	146	33	24	16	24	1.96
45975836--45975935	44	2.3	44	83	8	125	33	27	16	24	1.95
45978556--45978620	30	2.2	30	83	2	87	24	1	10	63	1.36
45979582--45979649	34	2.0	34	100	0	136	26	17	8	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45979582--45979634	17	3.1	17	68	10	54	26	15	9	49	1.74
45979583--45979661	34	2.3	34	93	0	131	26	16	6	50	1.69
45988310--45988387	29	2.7	29	84	2	95	51	11	2	34	1.52
45988317--45988393	28	2.7	30	82	9	90	50	11	3	33	1.57
46006949--46006981	10	3.3	10	95	0	57	60	15	21	3	1.48
46011501--46011633	46	2.9	47	85	5	164	32	26	20	21	1.97
46011501--46011678	47	3.8	47	81	5	191	32	27	19	21	1.97
46018910--46019077	40	4.2	40	83	4	106	25	26	23	24	2.00
46018933--46019077	40	3.6	40	85	4	193	23	26	24	25	2.00
46021154--46021205	26	2.0	26	96	0	95	28	34	23	13	1.92
46020915--46021271	103	3.5	103	93	2	592	30	28	20	20	1.98
46021612--46021675	30	2.2	29	81	10	76	29	28	6	35	1.82
46021619--46021675	30	1.9	30	85	3	80	29	24	7	38	1.82
46027925--46027995	37	1.9	37	85	0	97	39	4	19	36	1.71
46028816--46028873	30	1.9	30	89	0	89	32	12	25	29	1.92
46029213--46029473	47	5.6	47	77	11	225	27	20	30	21	1.98
46029211--46029471	94	2.8	92	76	13	250	27	20	30	21	1.98
46030849--46031127	95	2.9	95	87	1	382	26	18	20	35	1.95
46032288--46032380	25	3.8	24	70	4	62	22	29	17	31	1.96
46032698--46032743	15	2.9	17	78	12	53	47	2	19	30	1.61
46038154--46038187	17	2.0	17	100	0	68	17	29	23	29	1.97
46041188--46041267	27	3.0	27	90	0	133	45	25	13	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46041283--46041353	27	2.6	27	88	2	97	33	12	18	35	1.89
46041708--46041794	34	2.6	34	84	0	120	25	25	25	24	2.00
46048730--46048852	26	4.7	26	84	3	149	36	11	22	29	1.89
46048730--46048850	51	2.3	51	84	5	145	37	10	22	29	1.88
46050566--46050749	67	2.8	64	76	8	194	29	16	30	23	1.96
46053259--46053308	2	25.0	2	95	0	91	0	52	0	48	1.00
46054466--46054627	80	2.0	80	95	0	288	27	14	26	32	1.94
46061006--46061175	93	1.8	93	98	0	331	28	18	13	39	1.88
46061834--46061885	22	2.4	22	90	0	86	28	15	23	32	1.95
46064321--46064654	49	6.7	49	81	3	398	29	25	18	26	1.98
46064321--46064659	100	3.4	99	87	3	441	28	25	18	26	1.98
46065309--46065368	30	2.0	30	83	6	77	30	25	8	36	1.85
46068238--46068329	26	3.5	26	80	5	114	41	9	20	28	1.84
46074297--46074338	15	2.8	15	82	13	59	57	16	11	14	1.66
46078152--46078400	40	6.6	40	83	12	303	27	23	27	22	1.99
46078247--46078305	28	2.1	28	100	0	118	30	20	25	23	1.98
46078207--46078345	68	2.0	68	97	0	260	28	22	26	23	1.99
46078167--46078374	108	1.9	108	94	0	362	26	22	27	23	1.99
46082304--46082360	30	1.9	30	85	0	78	26	22	7	43	1.78
46084339--46084384	13	3.5	13	93	0	83	30	0	0	69	0.89
46088759--46088789	16	1.9	16	93	0	53	25	25	6	41	1.79
46101783--46101880	27	3.5	28	88	5	128	25	13	28	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46101811--46101895	27	3.0	27	87	5	98	30	11	24	32	1.91
46112377--46112559	79	2.3	81	84	7	232	25	27	22	24	2.00
46112356--46112559	40	5.1	40	82	8	238	25	27	22	24	2.00
46113248--46113291	22	2.0	22	83	12	56	38	15	6	38	1.75
46122107--46122291	79	2.3	82	84	7	238	25	27	22	24	2.00
46122088--46122291	40	5.1	40	82	8	238	25	27	22	25	2.00
46124337--46124521	40	4.7	40	82	6	207	26	27	21	24	1.99
46124365--46124517	79	1.9	80	81	6	186	26	27	20	25	1.99
46127564--46127633	21	3.2	21	70	18	70	40	27	12	20	1.88
46134999--46135144	43	3.4	42	79	10	127	29	23	19	28	1.98
46141195--46141236	18	2.4	17	84	11	50	52	26	2	19	1.58
46142673--46142829	43	3.7	43	75	13	169	30	26	15	27	1.96
46145022--46145071	24	2.1	24	88	0	73	30	26	16	28	1.96
46147344--46147383	10	3.9	10	81	18	55	12	27	0	60	1.33
46149158--46149268	47	2.3	46	86	4	132	50	12	9	27	1.70
46149178--46149268	47	1.9	47	90	0	146	52	13	7	26	1.66
46152301--46152347	24	2.0	24	100	0	94	17	29	0	53	1.44
46160279--46160401	41	3.0	41	91	0	192	25	27	22	24	2.00
46160639--46160979	27	12.7	27	79	2	265	32	9	18	39	1.83
46160639--46160971	54	6.2	53	76	4	292	32	9	18	39	1.83
46160639--46160979	81	4.2	80	77	4	303	32	9	18	39	1.83
46160965--46161044	27	3.0	27	90	0	124	26	21	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46164307--46164359	16	3.3	16	97	0	97	37	20	5	35	1.77
46169663--46169694	6	5.3	6	92	0	55	50	12	15	21	1.77
46169672--46169812	31	4.5	31	83	3	167	47	14	16	21	1.82
46169672--46169812	62	2.3	62	85	2	185	47	14	16	21	1.82
46169932--46170012	27	3.0	26	80	5	90	39	22	20	17	1.92
46170026--46170101	32	2.4	31	80	6	80	35	25	18	21	1.95
46170170--46170228	22	2.7	22	81	0	64	32	22	25	20	1.98
46170578--46170679	27	3.8	27	85	0	123	25	21	18	34	1.96
46172058--46172324	40	6.7	40	95	0	480	21	28	20	29	1.98
46180872--46181138	40	6.7	40	95	0	480	21	28	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325