Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  118  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38057159--38057209
21
2.4
21
74
6
50
74
1
17
5
1.11
38057212--38057274
33
1.9
33
84
12
85
55
6
25
12
1.60
38059023--38059087
10
6.5
10
71
13
53
24
21
15
38
1.92
38059023--38059076
20
2.7
20
85
0
72
25
20
16
37
1.93
38059023--38059096
30
2.5
30
84
8
80
22
20
17
39
1.92
38059023--38059087
20
3.2
20
73
16
62
24
21
15
38
1.92
38059718--38059764
20
2.3
20
85
0
67
29
36
12
21
1.91
38061279--38061338
27
2.3
25
81
13
68
73
5
16
5
1.19
38062298--38062406
11
9.0
12
68
18
50
72
2
17
7
1.20
38062298--38062401
6
17.0
6
66
15
52
72
2
17
7
1.21
38062300--38062358
18
3.4
17
79
9
73
74
5
13
6
1.19
38062343--38062414
36
1.9
38
83
10
96
68
2
20
8
1.29
38064068--38064114
20
2.3
20
85
0
67
29
36
12
21
1.91
38065493--38065524
14
2.1
16
88
11
50
9
18
3
68
1.30
38066623--38066655
13
2.4
14
85
10
50
69
0
21
9
1.15
38069321--38070957
818
2.0
818
98
0
3150
28
19
19
32
1.96
38071725--38071769
14
3.3
14
78
6
56
35
0
15
48
1.45
38072751--38072810
29
2.1
29
93
0
102
41
30
0
28
1.56
38072757--38072804
15
3.3
15
73
5
53
43
27
0
29
1.55
38073391--38073438
14
3.4
14
85
0
60
18
31
6
43
1.75
38073755--38073817
21
3.0
21
88
2
90
30
3
33
33
1.74
38077128--38077203
27
2.8
27
80
11
68
9
22
1
67
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38077166--38077285
12
10.0
12
71
19
72
8
16
3
71
1.24
38077122--38077187
13
4.7
14
74
10
55
9
22
1
66
1.28
38077129--38077202
14
5.3
14
73
15
55
9
20
1
68
1.24
38077166--38077205
15
2.9
15
82
14
50
7
17
0
75
1.03
38077164--38077271
6
17.7
6
71
9
76
6
16
3
73
1.19
38078314--38078344
10
3.0
10
90
9
53
0
9
0
90
0.46
38078315--38078345
11
2.8
11
100
0
62
0
6
0
93
0.35
38080538--38080594
30
1.9
30
82
7
71
42
15
10
31
1.81
38085328--38085368
17
2.4
18
80
8
50
14
24
4
56
1.58
38087604--38087636
13
2.4
14
90
10
50
18
6
0
75
1.00
38087620--38087657
10
3.7
10
92
3
58
10
10
5
73
1.23
38087551--38087857
94
3.1
101
88
8
477
17
16
8
57
1.63
38087704--38087740
14
2.9
12
85
14
56
21
8
0
70
1.13
38087817--38087843
10
2.7
10
100
0
54
14
7
0
77
0.97
38087799--38087844
14
3.8
12
83
16
60
21
6
0
71
1.08
38087802--38087857
24
2.3
24
81
6
69
16
7
0
76
0.99
38091984--38092015
16
2.0
16
100
0
64
12
12
25
50
1.75
38092129--38092482
45
7.9
45
94
0
582
38
15
20
25
1.92
38098722--38098778
29
2.0
29
92
0
96
24
0
29
45
1.53
38100612--38100655
22
2.0
22
95
0
79
25
36
4
34
1.76
38101317--38101361
14
3.3
14
78
6
56
48
15
0
35
1.45
38102844--38102909
21
3.0
22
86
4
80
30
4
30
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38105352--38105397
18
2.6
18
85
0
65
13
28
0
58
1.35
38106362--38106406
14
3.3
14
78
6
56
48
15
0
35
1.45
38107890--38107955
21
3.0
22
84
4
71
30
3
30
36
1.73
38110376--38110444
24
2.9
24
77
0
75
14
28
0
56
1.39
38110397--38110444
18
2.7
18
86
0
69
14
27
0
58
1.37
38111408--38111452
14
3.3
14
78
6
56
48
15
0
35
1.45
38116293--38116326
17
2.0
17
88
11
52
14
26
0
58
1.36
38120519--38120562
22
2.0
22
95
0
79
25
36
4
34
1.76
38123701--38123742
4
10.2
4
82
10
50
71
2
2
23
1.10
38124947--38124989
12
3.6
12
96
0
77
11
6
2
79
1.02
38131091--38131126
6
6.0
6
93
0
54
38
27
0
33
1.57
38131134--38131178
20
2.2
20
84
4
54
8
26
0
64
1.23
38131984--38132052
27
2.4
29
88
7
97
10
8
2
78
1.07
38132033--38132057
13
1.9
13
100
0
50
0
16
0
84
0.63
38132099--38132140
11
3.6
11
81
12
57
19
2
4
73
1.12
38132093--38132140
24
2.0
24
91
4
78
22
6
4
66
1.32
38135829--38135934
42
2.5
42
98
1
203
33
12
14
40
1.83
38135917--38135961
14
3.3
14
84
6
65
37
0
13
48
1.42
38139984--38140044
30
2.0
31
84
9
81
63
1
19
14
1.38
38142963--38142993
4
8.0
4
92
7
55
77
0
0
22
0.77
38144346--38144398
23
2.4
22
76
20
56
9
18
1
69
1.25
38146748--38146783
4
9.0
4
93
0
63
72
0
2
25
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38146739--38146782
12
3.6
12
93
3
70
68
2
4
25
1.20
38154264--38154293
16
1.9
15
93
6
51
43
33
3
20
1.68
38155837--38155876
21
2.0
20
90
5
62
15
7
0
77
0.98
38155837--38155881
10
4.3
11
80
11
58
20
8
0
71
1.12
38158614--38158653
14
2.9
14
88
0
53
50
7
32
10
1.64
38171950--38172000
12
4.5
12
80
14
63
74
3
5
15
1.16
38171951--38171979
11
2.6
11
100
0
58
72
6
6
13
1.26
38175038--38175514
245
2.0
242
96
1
873
45
16
19
17
1.86
38186898--38186941
22
2.0
22
95
0
79
25
36
4
34
1.76
38189991--38190087
30
3.2
30
69
9
81
28
26
14
29
1.95
38194165--38194232
16
4.3
15
80
15
75
79
2
16
1
0.93
38194166--38194230
21
3.0
21
82
10
71
80
3
15
1
0.92
38194165--38194219
6
10.2
6
75
18
50
80
3
16
0
0.86
38194295--38194350
18
3.1
18
74
5
51
67
1
19
10
1.29
38194301--38194382
30
2.7
30
81
5
85
63
0
21
14
1.30
38194360--38194404
12
3.8
12
85
2
56
64
0
22
13
1.28
38196531--38196616
30
2.9
30
73
13
86
26
24
17
31
1.97
38197168--38197215
14
3.4
14
85
0
60
43
6
31
18
1.75
38202099--38202146
14
3.4
14
85
0
60
43
6
31
18
1.75
38206366--38206427
10
5.9
10
74
10
52
33
32
3
30
1.74
38206366--38206428
21
3.0
21
88
2
90
33
33
3
30
1.74
38211449--38211539
10
9.0
10
70
11
51
38
16
24
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38211472--38211537
20
3.2
20
86
2
87
36
18
22
22
1.95
38219040--38219077
20
1.9
20
89
10
60
0
15
2
81
0.80
38219021--38219087
15
4.5
15
73
17
59
2
14
2
79
0.98
38222575--38222671
30
3.2
30
76
2
106
27
16
27
27
1.97
38222904--38222943
19
2.1
19
85
0
53
25
35
17
22
1.95
38223112--38223143
16
2.0
16
100
0
64
37
0
12
50
1.41
38224854--38224919
20
3.2
20
86
2
87
36
18
22
22
1.95
38229553--38229577
12
2.1
12
100
0
50
8
24
0
68
1.16
38229588--38229637
27
1.9
25
84
15
66
4
24
6
66
1.32
38230795--38230892
30
3.3
30
70
5
81
28
15
27
28
1.96
38232806--38232842
12
2.8
13
88
12
58
16
2
8
72
1.19
38234224--38234321
30
3.3
30
71
5
81
29
16
26
27
1.97
38234331--38234646
158
2.0
158
94
0
560
22
18
31
27
1.97
38237193--38237245
23
2.4
22
76
20
56
9
18
1
69
1.25
38240930--38240982
23
2.4
22
76
20
56
9
18
1
69
1.25
38247000--38247036
4
9.0
4
88
5
56
75
0
0
24
0.80
38255502--38255546
21
2.1
22
87
4
65
55
13
0
31
1.38
38255727--38255774
20
2.4
20
67
0
51
33
18
27
20
1.96
38257235--38257273
20
1.9
21
89
5
62
23
28
12
35
1.91
38257662--38257687
13
2.0
13
100
0
52
46
0
7
46
1.31
38258800--38258847
11
4.9
9
83
16
60
81
4
4
10
0.97
38258800--38258847
20
2.4
20
93
6
80
81
4
4
10
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38259798--38259895
6
16.0
6
69
12
65
72
2
20
5
1.14
38259798--38259894
12
7.9
12
75
16
74
72
2
20
5
1.15
38259913--38259952
18
2.3
18
91
4
64
67
5
17
10
1.37
38259920--38259994
18
4.5
17
71
23
54
57
1
28
13
1.44
38259900--38259994
35
2.8
34
80
13
90
57
3
24
14
1.52
38259899--38259979
17
4.6
18
77
11
69
58
3
22
16
1.54
38261228--38261266
20
1.9
21
89
5
62
23
28
12
35
1.91
38261656--38261681
13
2.0
13
100
0
52
46
0
7
46
1.31
38262791--38262837
9
5.1
9
84
5
58
78
2
4
14
0.99
38262794--38262840
10
4.9
10
82
7
53
78
2
4
14
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325