genome.fa.s3.2.7.7.80.10.50.1000.253.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  253  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82417664--82417738	16	4.4	17	82	12	84	60	0	14	25	1.35
82417695--82417741	19	2.5	19	89	3	78	55	0	12	31	1.38
82418517--82418573	23	2.6	21	72	10	51	66	1	19	12	1.32
82418580--82418625	21	2.2	20	82	14	58	69	0	19	10	1.17
82418606--82418664	16	3.6	16	86	9	66	69	1	18	10	1.25
82420612--82420730	50	2.3	52	86	2	170	31	15	14	37	1.88
82422088--82422149	27	2.3	27	94	0	106	33	19	14	32	1.92
82427789--82427829	13	3.2	13	83	10	57	31	0	0	68	0.90
82428048--82428103	28	2.0	29	85	3	78	69	5	10	14	1.34
82435432--82435475	21	2.1	21	91	8	72	40	13	13	31	1.84
82440311--82440345	16	2.1	17	89	5	54	2	14	0	82	0.77
82447002--82447123	43	2.9	41	81	7	145	29	23	13	32	1.94
82449219--82449258	21	1.9	21	84	0	53	47	0	17	35	1.48
82457108--82457145	20	1.9	20	88	0	58	31	2	18	47	1.62
82464613--82464663	25	2.0	25	100	0	102	19	27	15	37	1.92
82469679--82469854	46	3.8	46	77	12	207	21	20	28	29	1.98
82469676--82469846	93	1.8	93	94	0	306	21	21	28	28	1.98
82472994--82473065	25	2.9	24	85	4	81	26	20	22	30	1.98
82473021--82473090	25	2.8	25	91	0	104	27	21	25	25	1.99
82473296--82473540	27	9.1	27	87	0	346	23	21	19	35	1.96
82473528--82473678	27	5.7	26	80	7	153	29	8	19	41	1.81
82473540--82473692	54	2.9	54	84	2	175	32	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82473528--82473678	81	1.9	79	86	5	214	29	8	19	41	1.81
82473680--82473824	27	5.4	27	91	0	227	42	8	21	28	1.81
82473671--82473824	81	1.9	81	93	0	263	40	7	21	29	1.81
82473671--82473854	81	2.3	81	84	3	228	38	7	22	30	1.82
82476265--82476334	25	2.8	25	93	0	113	25	24	24	25	2.00
82476541--82476752	27	7.9	27	86	2	275	24	21	17	36	1.95
82476540--82476753	106	2.0	108	89	3	335	25	21	17	35	1.95
82476742--82476843	27	3.8	26	81	12	109	31	8	20	39	1.83
82476742--82476843	54	1.9	53	90	6	161	31	8	20	39	1.83
82476756--82476895	54	2.6	54	81	4	140	31	8	17	42	1.80
82476744--82476936	27	7.2	27	76	9	101	31	8	21	38	1.83
82476888--82477068	27	6.7	27	87	0	227	40	8	21	29	1.83
82476897--82477071	81	2.2	81	89	0	251	41	9	21	28	1.83
82478979--82479012	14	2.3	15	90	5	52	70	0	2	26	1.01
82481695--82481733	20	2.0	20	85	5	53	51	0	25	23	1.49
82482102--82482138	9	4.1	9	92	0	65	29	10	13	45	1.77
82482130--82482215	24	3.6	24	100	0	172	38	23	12	25	1.90
82484696--82484753	30	1.9	30	92	0	98	32	13	25	27	1.94
82485096--82485452	47	7.6	46	72	13	212	27	19	28	23	1.98
82485093--82485453	94	3.9	94	81	9	409	27	19	29	23	1.98
82489465--82489507	15	2.9	15	86	10	61	53	0	6	39	1.28
82489466--82489512	14	3.2	14	85	8	58	57	0	4	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82494704--82494745	22	1.9	22	100	0	84	9	38	7	45	1.64
82495349--82495377	13	2.1	14	93	6	51	13	0	6	79	0.93
82501766--82501800	15	2.3	15	100	0	70	25	28	14	31	1.95
82509683--82509864	83	2.2	83	98	0	355	17	26	15	40	1.89
82516660--82516881	118	1.9	120	83	7	292	25	27	22	24	2.00
82516658--82516881	40	5.7	40	85	6	278	25	28	21	24	1.99
82522238--82522279	20	2.2	20	86	4	59	14	16	4	64	1.45
82522251--82522381	57	2.3	56	85	4	163	25	21	6	46	1.74
82524815--82524861	16	2.9	16	80	0	58	46	23	21	8	1.78
82525085--82525156	29	2.5	29	88	0	99	23	18	31	26	1.97
82525142--82525171	15	2.0	15	93	0	51	13	16	40	30	1.87
82526240--82526273	18	1.9	18	88	5	52	47	8	14	29	1.75
82533648--82533728	41	2.0	42	82	7	103	24	28	16	30	1.96
82533675--82533798	43	2.9	43	90	3	180	22	31	20	25	1.98
82533718--82533839	43	2.8	46	86	7	130	25	31	21	22	1.98
82548116--82548202	40	2.2	40	83	4	104	33	28	16	21	1.95
82568037--82568071	10	3.5	10	96	0	61	22	8	0	68	1.16
82568053--82568079	14	1.9	14	100	0	54	18	7	0	74	1.05
82575587--82575632	23	1.9	25	86	8	69	2	17	6	73	1.14
82575663--82575713	8	6.4	8	88	0	75	41	1	0	56	1.10
82575657--82575705	13	3.9	13	80	20	59	40	0	0	59	0.98
82575666--82575712	16	2.9	16	96	0	85	42	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82583111--82583157	18	2.6	17	78	15	51	6	21	0	72	1.07
82583114--82583185	24	3.0	24	73	19	69	6	20	2	69	1.25
82583170--82583202	13	2.4	14	90	5	50	12	9	3	75	1.14
82583214--82583245	8	4.1	8	96	4	57	37	0	0	62	0.95
82583194--82583247	13	4.4	12	80	17	58	33	0	1	64	1.04
82584790--82584860	7	10.3	7	78	18	78	15	0	1	83	0.73
82584790--82584860	19	3.4	21	81	14	78	15	0	1	83	0.73
82585912--82586113	107	1.9	108	89	3	318	31	11	24	31	1.91
82588300--82588394	46	2.1	46	95	0	172	24	33	13	28	1.93
82590124--82590197	25	2.9	25	76	9	87	66	4	2	27	1.23
82596753--82597014	39	6.7	39	92	2	395	28	30	21	19	1.98
82599729--82599780	21	2.5	21	87	0	68	23	36	25	15	1.93
82604275--82604303	12	2.5	12	94	5	51	72	0	20	6	1.07
82605372--82605410	19	2.0	20	90	5	62	56	0	0	43	0.99
82606981--82607020	16	2.5	17	80	19	50	60	22	0	17	1.37
82609763--82609840	40	1.9	41	84	7	106	51	0	2	46	1.14
82611577--82611601	12	2.1	12	100	0	50	32	8	0	60	1.26
82617841--82617884	18	2.3	20	78	21	51	65	18	4	11	1.40
82623330--82623575	123	2.0	123	99	0	483	29	8	18	43	1.78
82627917--82627961	22	2.0	22	91	0	72	48	15	2	33	1.57
82632516--82632560	22	2.0	22	91	0	72	48	15	2	33	1.57
82648371--82648544	87	2.0	87	100	0	348	36	12	12	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82648612--82648653	21	2.0	21	95	0	75	16	11	14	57	1.66
82652321--82652362	14	3.1	14	93	3	68	38	7	11	42	1.69
82656404--82656556	42	3.6	42	79	3	164	29	14	25	30	1.95
82664345--82664472	46	2.8	44	84	11	152	26	29	16	27	1.97
82665979--82666055	35	2.1	37	88	4	113	25	29	19	24	1.98
82666174--82666924	47	15.7	47	94	2	1270	29	29	8	32	1.87
82666604--82666687	25	3.3	25	64	23	66	33	29	4	32	1.78
82670492--82670917	39	10.8	40	89	5	580	26	29	20	23	1.99
82670504--82670917	199	2.1	197	87	2	598	27	28	20	23	1.99
82672127--82672206	37	2.1	38	88	2	117	25	31	18	25	1.98
82672360--82673054	47	14.7	47	94	5	1165	30	29	7	32	1.86
82672364--82673054	338	2.1	328	93	5	1171	30	29	7	32	1.86
82676608--82677035	40	10.8	40	94	1	662	26	29	20	23	1.99
82678249--82678327	37	2.1	37	90	0	122	25	31	18	24	1.98
82678445--82679191	47	15.7	47	94	2	1282	29	29	8	32	1.87
82678445--82679191	96	7.9	94	94	2	1282	29	29	8	32	1.87
82678445--82679191	143	5.2	140	94	2	1228	29	29	8	32	1.87
82682957--82682994	19	2.0	19	85	10	51	18	26	31	23	1.97
82688458--82688596	55	2.5	55	73	4	136	13	24	33	28	1.93
82693087--82693185	48	2.1	48	90	0	153	31	16	20	32	1.94
82699899--82700191	52	5.9	50	88	5	425	37	6	24	31	1.80
82700345--82700449	37	2.8	37	94	0	174	24	18	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82704101--82704157	30	1.9	30	96	0	105	26	36	28	8	1.86
82709715--82709866	27	5.6	27	93	3	241	26	13	28	30	1.94
82709715--82709866	55	2.8	55	94	0	259	26	13	28	30	1.94
82717758--82717909	27	5.6	27	93	3	241	26	13	28	30	1.94
82717758--82717909	55	2.8	55	94	0	259	26	13	28	30	1.94
82723603--82723666	28	2.3	28	88	0	92	20	17	35	26	1.94
82723983--82724159	27	6.6	27	75	5	128	39	21	10	28	1.86
82723983--82724132	53	2.8	52	81	7	142	40	22	9	28	1.85
82724003--82724160	27	5.9	27	77	10	137	39	20	9	30	1.84
82724003--82724133	53	2.5	53	81	5	149	40	21	8	29	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325