Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  288  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94096826--94096857
9
3.6
9
100
0
64
40
0
0
59
0.97
94100041--94100143
30
3.4
30
84
0
116
27
21
25
26
1.99
94102941--94102967
14
1.9
14
100
0
54
59
3
0
37
1.15
94103042--94103142
21
5.1
20
83
12
111
54
0
0
45
0.99
94103077--94103155
41
1.9
40
87
10
115
59
1
0
39
1.06
94103077--94103155
21
3.9
21
90
8
119
59
1
0
39
1.06
94103112--94103189
34
2.3
34
80
8
97
61
1
0
37
1.04
94105248--94105282
9
3.8
9
88
3
52
11
8
22
57
1.61
94110089--94110121
7
4.9
7
85
7
50
72
0
0
27
0.85
94111319--94111384
21
3.2
20
77
12
62
43
3
0
53
1.16
94111325--94111387
23
2.9
22
81
13
85
41
3
0
55
1.16
94126525--94126624
37
2.7
37
82
3
121
33
19
18
30
1.95
94130143--94130208
32
2.1
32
97
0
123
21
13
12
53
1.72
94133971--94134096
61
2.1
61
86
3
173
44
13
2
39
1.57
94136152--94136243
28
3.3
28
90
0
139
35
17
23
22
1.95
94145250--94145327
32
2.4
33
81
12
90
51
2
16
29
1.58
94146540--94146590
26
2.0
26
84
0
66
31
0
1
66
1.03
94146554--94146603
20
2.7
20
84
9
61
32
0
2
66
1.03
94146554--94146586
17
1.9
17
93
0
57
30
0
0
69
0.88
94148086--94148111
12
2.2
12
100
0
52
84
0
0
15
0.62
94156233--94156359
28
4.6
27
85
5
150
28
14
28
28
1.96
94156234--94156359
54
2.3
57
83
9
163
28
15
27
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94158521--94158574
21
2.6
20
80
8
72
38
7
9
44
1.65
94158553--94159020
17
26.8
17
70
13
222
44
11
10
33
1.75
94158552--94159000
35
12.9
34
71
13
141
44
11
10
34
1.74
94158708--94158890
53
3.4
54
72
15
141
43
12
11
32
1.78
94158718--94158998
36
7.7
37
75
11
135
42
10
11
34
1.76
94158794--94158998
74
2.8
74
80
6
213
43
10
11
34
1.75
94158689--94159010
38
8.9
37
74
13
203
43
10
11
33
1.76
94159596--94159622
11
2.5
11
100
0
54
22
7
0
70
1.12
94159617--94159657
12
3.6
12
87
12
68
0
17
0
82
0.66
94159620--94159656
10
3.5
10
86
13
56
0
16
0
83
0.64
94159608--94159655
22
2.2
22
88
0
69
6
14
0
79
0.92
94159623--94159671
22
2.2
22
85
7
64
0
22
0
77
0.77
94160222--94160338
30
3.9
30
82
3
130
46
3
20
29
1.67
94160334--94160370
15
2.4
16
90
4
58
27
0
2
70
1.01
94160611--94161678
54
20.0
54
93
3
1803
37
17
15
28
1.91
94160611--94161678
107
10.0
108
93
3
1803
37
17
15
28
1.91
94160611--94161678
161
6.7
162
93
3
1798
37
17
15
28
1.91
94161641--94161734
49
2.0
46
85
12
127
41
12
17
28
1.86
94161690--94162352
72
9.5
70
87
8
860
34
18
16
30
1.93
94162193--94162344
76
2.0
75
88
10
229
36
19
16
27
1.93
94162306--94162398
51
1.9
50
89
8
147
41
18
12
26
1.86
94162306--94162509
52
3.7
50
70
21
140
39
20
13
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94162471--94162639
65
2.5
67
84
6
202
32
23
14
29
1.94
94174391--94174858
17
26.8
17
70
13
222
44
11
10
33
1.75
94174430--94174838
35
11.6
35
71
14
143
44
11
10
34
1.75
94174651--94174758
57
1.9
56
84
3
146
39
11
12
37
1.78
94174632--94174836
74
2.8
74
80
6
213
43
10
12
34
1.76
94174528--94174848
38
8.9
37
74
11
210
43
10
11
33
1.76
94175438--94175464
11
2.5
11
100
0
54
22
7
0
70
1.12
94175462--94175515
10
5.2
10
80
14
56
0
22
0
77
0.76
94175460--94175512
14
3.8
13
85
14
63
0
20
0
79
0.74
94176082--94176183
30
3.4
29
85
5
132
46
3
20
29
1.69
94176182--94176214
14
2.3
15
89
5
50
21
0
3
75
0.93
94179042--94179079
8
4.9
8
83
6
51
15
0
2
81
0.80
94179042--94179079
15
2.5
15
91
4
58
15
0
2
81
0.80
94194322--94194359
12
3.2
12
100
0
76
7
15
31
44
1.75
94194383--94194632
41
6.1
38
85
5
149
35
25
21
18
1.95
94195487--94195665
79
2.2
80
86
4
245
39
15
20
25
1.91
94195523--94195752
79
2.9
81
81
5
225
38
13
22
25
1.91
94195602--94195784
82
2.2
82
82
5
210
37
14
21
26
1.91
94199879--94199903
3
8.3
3
100
0
50
64
0
0
36
0.94
94202212--94202255
19
2.2
20
84
4
54
34
25
18
22
1.96
94203035--94203059
3
8.3
3
100
0
50
64
0
0
36
0.94
94208793--94208826
16
2.1
16
94
0
59
70
8
5
14
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94211069--94211093
2
12.5
2
100
0
50
0
0
48
52
1.00
94211424--94211449
2
13.0
2
100
0
52
50
0
0
50
1.00
94237968--94237993
13
2.0
13
100
0
52
15
23
30
30
1.95
94240736--94240788
20
2.7
20
88
5
81
37
13
20
28
1.90
94242714--94242751
17
2.2
17
86
9
51
55
10
5
28
1.56
94244536--94244593
30
1.9
30
89
6
91
20
32
29
17
1.95
94263568--94263647
39
2.1
39
97
0
151
26
20
21
32
1.97
94270356--94270413
5
10.8
5
80
12
62
43
0
1
55
1.10
94270357--94270414
8
6.7
9
74
21
61
43
0
1
55
1.10
94270359--94270414
17
3.4
17
85
9
71
42
0
1
55
1.10
94271730--94271768
18
2.1
19
90
4
62
41
0
10
48
1.37
94272008--94272142
39
3.4
39
74
6
112
23
20
28
28
1.99
94272265--94272305
19
2.2
19
87
12
59
46
0
24
29
1.53
94276770--94276832
5
11.8
5
81
11
63
42
0
3
53
1.16
94276785--94276833
12
3.8
13
84
12
57
40
0
4
55
1.19
94278147--94278185
18
2.1
19
90
4
62
41
0
10
48
1.37
94278426--94278560
39
3.4
39
74
6
112
23
20
28
28
1.99
94278683--94278723
19
2.2
19
87
12
59
46
0
24
29
1.53
94293850--94293889
21
1.9
21
89
0
62
62
7
12
17
1.52
94298096--94298176
28
2.9
28
85
1
101
48
19
11
20
1.79
94298105--94298184
27
2.9
27
81
5
81
46
20
11
22
1.82
94301268--94301307
15
2.5
17
84
15
59
50
2
0
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94306632--94306661
14
2.2
14
94
5
53
0
13
0
86
0.57
94310834--94310861
10
2.8
10
100
0
56
60
0
7
32
1.24
94310890--94310919
15
2.0
15
93
0
51
40
10
0
50
1.36
94312287--94312371
41
2.1
41
97
0
161
44
7
25
22
1.78
94312544--94312585
23
2.0
22
86
13
61
78
0
2
19
0.86
94320101--94320170
30
2.3
30
100
0
140
34
24
14
27
1.94
94320714--94320754
21
2.1
19
86
9
55
53
9
4
31
1.55
94329469--94329559
34
2.6
33
78
10
92
40
3
2
53
1.29
94334461--94334523
25
2.4
27
82
7
69
6
15
4
73
1.21
94342225--94342273
26
2.0
24
92
8
80
63
4
0
32
1.13
94342221--94342286
26
3.0
21
81
16
71
68
3
0
28
1.05
94342253--94342296
19
2.2
21
84
8
56
72
4
0
22
1.02
94346652--94346698
18
2.5
19
82
6
60
48
6
12
31
1.66
94379767--94379958
40
4.8
40
88
4
192
27
27
20
24
1.99
94379738--94379957
80
2.8
80
78
7
232
28
27
20
24
1.99
94384981--94385035
29
1.9
29
88
3
85
30
25
21
21
1.98
94385049--94385131
31
2.7
29
85
7
112
30
24
14
31
1.94
94385292--94385361
25
2.8
25
88
0
104
24
21
25
28
1.99
94385807--94385849
17
2.5
17
92
0
77
20
32
32
13
1.92
94386297--94386376
27
2.9
27
78
14
83
33
10
16
40
1.82
94386360--94386483
27
4.6
27
82
6
144
28
8
21
41
1.81
94386359--94386483
54
2.3
54
87
2
171
28
8
21
41
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94421187--94421237
24
2.2
23
82
10
59
62
1
9
25
1.36
94422475--94422513
16
2.4
17
91
4
62
43
2
5
48
1.38
94425106--94425138
15
2.2
15
94
0
57
51
39
3
6
1.42
94431483--94431703
47
4.7
47
98
0
424
31
9
29
29
1.88
94431821--94431899
37
2.1
37
90
0
122
24
18
31
25
1.98
94443362--94443422
30
2.1
29
81
9
70
29
14
6
49
1.69
94443678--94443814
5
29.0
5
69
17
80
35
2
0
61
1.14
94443643--94443755
52
2.2
51
81
13
124
31
1
2
63
1.18
94443648--94443814
32
5.7
31
73
23
105
33
2
2
61
1.22
94443642--94443797
10
14.8
10
68
23
81
32
1
2
62
1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325