genome.fa.s3.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  161  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51621316--51621340	11	2.3	11	100	0	50	76	0	8	16	1.02
51621497--51621544	24	2.0	25	84	12	64	52	2	8	37	1.44
51626384--51626441	28	2.1	28	100	0	116	29	15	10	44	1.79
51637123--51637300	40	4.5	40	92	3	272	25	28	22	24	2.00
51640908--51640983	25	3.0	25	100	0	152	19	7	35	36	1.81
51641650--51641697	25	1.9	25	82	0	60	35	20	14	29	1.93
51641725--51641799	20	3.9	19	80	13	75	37	10	18	33	1.86
51641849--51641984	26	5.3	26	85	4	181	29	19	22	29	1.98
51650655--51650753	28	3.5	29	86	9	125	27	15	28	29	1.96
51658667--51658765	28	3.5	29	86	9	125	27	15	28	29	1.96
51662398--51662714	94	3.3	94	75	13	272	23	30	18	27	1.98
51662390--51662722	48	6.9	49	73	13	201	24	30	18	27	1.98
51668380--51668418	20	2.0	20	89	0	60	48	2	10	38	1.51
51676963--51677043	42	1.9	42	100	0	162	43	6	17	33	1.74
51678180--51678355	56	3.1	56	95	3	327	45	9	22	22	1.80
51679484--51679668	40	4.7	40	82	7	209	23	22	27	26	2.00
51679537--51679701	79	2.1	79	83	6	201	25	20	27	26	1.99
51684858--51684937	36	2.2	36	78	14	85	30	0	1	68	0.97
51685936--51685962	8	3.4	8	100	0	54	0	11	0	88	0.50
51688443--51688553	45	2.4	45	77	7	116	63	0	5	30	1.23
51688919--51689086	86	1.9	88	83	7	218	33	9	20	35	1.85
51690219--51690251	16	2.0	17	88	5	50	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51690330--51690374	17	2.8	17	80	12	51	37	0	6	55	1.26
51692064--51692260	27	7.3	27	82	3	227	28	22	11	36	1.90
51692026--51692287	54	4.9	54	84	0	229	29	23	13	33	1.93
51695086--51695141	19	2.9	19	81	0	76	55	25	3	16	1.57
51695296--51695495	77	2.6	76	79	8	197	27	21	10	41	1.85
51704476--51704545	33	2.1	33	91	0	113	32	38	10	18	1.84
51711229--51711327	30	3.3	30	92	0	162	25	49	6	19	1.71
51711485--51711520	16	2.2	16	90	0	54	27	5	30	36	1.80
51711802--51712006	23	8.6	25	68	13	83	33	6	3	56	1.44
51712072--51712127	25	2.3	24	79	14	62	37	16	3	42	1.65
51723180--51723211	12	2.7	12	90	0	55	78	0	21	0	0.76
51724078--51724249	88	2.0	85	88	3	254	24	18	20	37	1.94
51724220--51724262	13	3.4	13	81	12	54	13	9	4	72	1.26
51724134--51724523	98	4.1	97	80	11	430	25	16	17	40	1.91
51724443--51725038	75	8.1	75	86	4	809	30	16	20	32	1.95
51724443--51725038	148	4.0	147	89	2	799	30	16	20	32	1.95
51724944--51725511	88	6.5	87	76	14	426	27	16	18	37	1.92
51724944--51725362	178	2.3	179	83	8	496	27	16	18	37	1.92
51724965--51725387	90	4.7	89	82	10	411	28	17	18	35	1.93
51725325--51725473	76	1.9	77	86	1	210	30	18	19	32	1.95
51726129--51726197	30	2.3	30	92	0	120	26	50	5	17	1.68
51726657--51726702	25	1.9	24	91	8	76	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51726657--51726863	23	8.6	25	72	14	87	32	6	4	56	1.46
51726800--51726866	25	2.9	22	78	10	71	29	5	5	58	1.46
51732664--51732794	47	2.8	47	80	3	158	32	23	14	29	1.94
51741057--51741134	41	1.9	41	82	10	97	46	5	6	42	1.51
51742382--51742431	27	1.9	26	88	8	75	20	8	6	66	1.40
51742818--51742982	71	2.3	72	79	4	165	47	6	9	37	1.60
51747183--51747233	22	2.3	21	80	9	57	21	0	7	70	1.12
51747879--51747919	21	1.9	22	85	5	57	12	26	36	24	1.91
51748239--51748273	14	2.5	14	90	0	52	31	31	11	25	1.91
51759538--51759597	30	2.0	30	96	0	111	25	0	15	60	1.35
51766570--51766884	161	2.0	161	92	0	522	33	13	12	40	1.82
51766785--51766947	74	2.2	74	85	4	229	39	9	11	39	1.74
51772403--51772432	2	15.0	2	100	0	60	50	0	0	50	1.00
51773816--51773853	19	2.0	19	89	0	58	63	13	5	18	1.48
51781828--51781909	41	2.0	41	97	0	155	37	7	6	48	1.56
51787598--51787705	26	4.2	26	90	2	164	34	7	22	36	1.82
51793708--51793789	26	3.2	26	89	0	128	34	7	21	36	1.82
51799512--51799768	55	4.8	55	78	10	252	35	17	25	21	1.95
51799520--51799719	108	1.8	110	89	4	316	34	17	25	23	1.96
51806362--51806559	108	1.8	110	85	6	287	34	16	25	23	1.95
51806798--51806828	16	1.9	16	93	0	53	41	0	22	35	1.54
51840747--51840773	6	4.5	6	100	0	54	0	14	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51851078--51851620	181	3.0	181	96	0	989	40	19	16	24	1.91
51853339--51853390	8	6.8	8	86	8	81	38	1	0	59	1.08
51853411--51853437	8	3.4	8	100	0	54	77	11	11	0	0.99
51854401--51854518	58	2.0	58	86	0	164	23	14	27	34	1.94
51859266--51859293	8	3.5	8	100	0	56	14	0	21	64	1.29
51863316--51863346	16	1.9	16	93	0	53	35	22	0	41	1.54
51863313--51863352	20	2.0	20	85	0	53	37	22	0	40	1.54
51863582--51863797	55	4.0	54	82	6	249	21	25	17	35	1.95
51863590--51863790	108	1.8	110	87	6	302	22	25	17	34	1.96
51865266--51865437	93	1.8	93	92	0	290	29	29	20	20	1.98
51865258--51865433	46	3.8	46	77	15	191	30	29	19	20	1.97
51867538--51867583	23	2.0	23	84	12	60	45	10	6	36	1.65
51867545--51867589	23	2.0	23	82	8	56	40	13	8	37	1.76
51871899--51871944	20	2.3	20	92	7	76	32	23	4	39	1.75
51876504--51876758	55	4.8	54	77	11	217	21	24	18	35	1.95
51882516--51882548	8	4.0	8	96	4	57	12	0	24	63	1.28
51882929--51882982	26	2.1	26	100	0	108	27	22	24	25	2.00
51885917--51885963	24	2.0	24	91	0	76	34	4	14	46	1.64
51886334--51886360	13	2.1	13	100	0	54	29	0	14	55	1.40
51887134--51887178	23	2.0	23	86	0	63	31	4	0	64	1.13
51892325--51892369	20	2.2	21	88	11	67	31	2	4	62	1.27
51894532--51894569	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51895629--51895896	134	2.0	134	99	0	527	41	17	11	29	1.85
51911253--51911312	25	2.3	27	80	8	70	35	1	13	50	1.52
51911253--51911317	27	2.4	29	73	17	68	35	1	13	49	1.52
51919525--51919674	67	2.2	67	81	8	171	32	17	28	21	1.96
51919549--51919732	67	2.8	64	77	8	194	29	17	29	22	1.97
51922909--51922934	11	2.4	11	100	0	52	19	15	15	50	1.79
51939126--51939212	43	2.0	43	95	0	156	26	14	14	43	1.85
51945520--51945572	17	3.1	17	86	2	70	13	16	43	26	1.85
51948345--51948377	16	2.1	16	88	11	50	60	0	3	36	1.12
51948361--51948392	10	3.2	10	95	0	55	68	0	0	31	0.90
51968109--51968286	47	3.8	47	80	5	200	32	27	19	20	1.97
51971933--51972117	79	2.3	82	83	7	229	24	27	22	24	2.00
51971914--51972117	40	5.1	40	81	8	229	24	27	22	25	2.00
51976277--51976390	47	2.4	47	92	0	183	28	30	7	34	1.84
51976995--51977034	20	2.0	20	100	0	80	45	10	10	35	1.71
51978678--51978800	40	3.1	40	77	0	129	24	19	26	29	1.98
51986651--51986860	40	5.3	40	79	4	237	23	20	27	27	1.99
51986654--51986869	80	2.7	78	88	4	308	24	21	27	26	1.99
51995389--51995441	25	2.2	24	82	3	61	39	20	20	18	1.92
51997784--51997944	54	3.0	54	81	0	169	26	20	29	23	1.99
52001807--52001869	28	2.3	28	94	2	110	17	38	20	23	1.93
52006093--52006137	18	2.4	19	85	10	58	80	6	6	6	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52006092--52006139	19	2.5	19	78	18	55	79	6	8	6	1.07
52006210--52006314	3	35.7	3	96	3	196	65	0	34	0	0.93
52007078--52007125	21	2.3	21	79	10	55	68	4	0	27	1.07
52010809--52010840	15	2.1	15	100	0	64	37	0	6	56	1.25
52010803--52010869	29	2.2	32	78	7	77	40	0	4	55	1.20
52016352--52016508	42	3.7	43	78	10	153	28	27	19	25	1.98
52022417--52022532	28	4.2	28	88	2	164	37	21	24	17	1.94
52027182--52027321	42	3.3	43	78	12	144	28	26	18	26	1.98
52030349--52030386	16	2.4	16	78	4	51	42	23	5	28	1.76
52030835--52030999	80	2.0	82	91	2	271	39	10	9	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325