genome.fa.s3.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  171  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55555996--55556149	6	24.8	6	70	18	84	21	20	11	46	1.82
55555996--55556100	31	3.4	31	72	15	99	23	18	11	46	1.81
55555996--55556054	25	2.4	25	85	0	91	27	20	6	45	1.76
55556058--55556149	25	3.7	25	89	0	139	17	21	15	45	1.85
55555991--55556125	62	2.2	62	89	1	198	22	19	11	46	1.81
55556027--55556125	31	3.2	31	71	16	96	21	19	13	46	1.83
55556812--55557002	49	3.9	50	85	3	253	26	17	26	29	1.97
55557200--55557229	16	1.9	15	93	6	51	43	0	23	33	1.54
55561595--55561920	27	12.1	27	80	8	319	38	19	10	31	1.86
55561600--55561864	80	3.3	80	86	3	381	38	20	10	31	1.86
55561600--55561864	107	2.5	107	85	3	365	38	20	10	31	1.86
55564886--55564916	5	6.2	5	100	0	62	19	0	19	61	1.35
55566570--55566786	40	5.4	40	83	3	242	23	27	23	25	2.00
55567161--55567185	13	1.9	13	100	0	50	40	0	0	60	0.97
55574073--55574116	22	2.0	22	100	0	88	40	18	18	22	1.91
55574871--55574941	35	2.0	35	81	5	81	28	2	26	42	1.69
55577909--55577950	19	2.3	18	88	8	59	26	16	11	45	1.82
55581100--55581271	46	3.7	46	74	13	181	29	26	20	23	1.99
55581106--55581275	93	1.8	93	92	0	286	29	27	20	22	1.98
55583058--55583214	86	1.8	85	83	4	208	35	22	15	25	1.94
55589111--55589153	20	2.0	21	83	16	54	60	18	0	20	1.36
55589844--55589962	47	2.5	47	84	0	139	30	30	15	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55591791--55591942	46	3.3	45	83	10	168	26	17	30	24	1.97
55591914--55591975	30	2.1	30	93	0	106	29	14	27	29	1.95
55592008--55592137	47	2.7	47	80	5	154	27	19	29	23	1.98
55591965--55592137	49	3.5	50	78	6	160	28	18	28	24	1.98
55596802--55596881	34	2.4	34	87	4	108	23	25	26	25	2.00
55614291--55614350	27	2.3	26	85	2	75	35	20	23	21	1.96
55616170--55616301	42	3.1	43	80	7	144	34	25	15	24	1.95
55616195--55616291	44	2.3	42	85	7	133	34	27	16	21	1.95
55622815--55622986	40	4.3	40	91	2	258	25	29	21	23	1.99
55622815--55623032	80	2.7	81	83	6	277	25	27	21	25	1.99
55630749--55630970	118	1.9	119	84	6	299	25	27	22	24	2.00
55630747--55630970	40	5.7	40	85	7	287	25	27	22	24	2.00
55633935--55634070	43	3.2	44	74	13	122	33	22	18	26	1.97
55633935--55634094	86	1.9	85	81	6	198	31	24	18	25	1.98
55636769--55636962	71	2.7	71	90	0	298	39	14	17	28	1.89
55640943--55641037	43	2.2	42	85	5	120	28	16	26	28	1.97
55648540--55648574	17	2.1	17	100	0	70	14	5	22	57	1.59
55649335--55649411	26	3.0	26	84	0	100	18	20	23	37	1.94
55661505--55661531	11	2.5	11	100	0	54	25	0	7	66	1.17
55662741--55662916	46	3.8	46	79	10	205	19	21	30	28	1.97
55662737--55662909	93	1.9	93	93	0	301	19	21	31	27	1.97
55665838--55665916	15	5.4	14	75	10	61	11	17	12	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55668284--55668459	46	3.8	46	80	10	205	19	21	30	28	1.97
55668280--55668452	93	1.9	93	93	0	301	19	21	31	27	1.97
55670852--55670965	43	2.7	43	72	6	106	24	14	26	35	1.93
55673774--55673885	40	2.8	40	87	2	145	25	28	21	24	1.99
55676963--55676993	15	2.1	15	100	0	62	25	25	19	29	1.99
55685498--55685722	40	5.6	40	84	3	299	23	23	27	25	2.00
55685498--55685722	83	2.8	80	89	4	353	23	23	27	25	2.00
55687333--55687448	45	2.5	45	87	8	155	35	18	23	23	1.96
55687335--55687448	23	5.0	23	82	11	128	35	18	22	22	1.95
55690468--55690506	19	2.0	20	85	14	55	46	0	15	38	1.46
55692090--55692351	47	5.6	47	78	7	214	22	29	18	29	1.97
55692094--55692351	46	5.5	47	77	12	196	22	29	18	29	1.97
55695273--55695297	13	1.9	13	100	0	50	20	16	32	32	1.94
55702248--55702466	46	4.7	46	77	8	185	22	28	20	28	1.98
55702802--55702859	30	1.9	30	92	0	98	29	25	12	32	1.92
55708596--55708621	6	4.3	6	100	0	52	30	0	0	69	0.89
55708596--55708621	9	2.9	9	100	0	52	30	0	0	69	0.89
55708638--55708668	16	1.9	16	93	0	53	19	9	3	67	1.33
55710256--55710313	5	11.2	5	85	7	62	15	5	1	77	1.02
55712472--55712629	43	3.7	43	79	12	164	24	17	25	32	1.96
55715369--55715405	11	3.5	11	78	14	51	10	32	29	27	1.90
55715361--55715406	20	2.3	20	100	0	92	10	32	28	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55718544--55718669	46	2.7	46	92	2	209	20	20	27	30	1.98
55722658--55722921	40	6.6	40	90	1	370	28	26	21	23	1.99
55722658--55722921	120	2.2	120	91	2	415	28	26	21	23	1.99
55726356--55726681	27	12.1	27	82	4	125	31	10	18	39	1.85
55726427--55726736	133	2.3	135	87	4	441	32	9	18	39	1.83
55726396--55726735	27	12.7	27	82	5	332	32	9	18	39	1.83
55728461--55728725	40	6.7	40	87	4	340	26	26	21	24	2.00
55728461--55728725	119	2.2	121	83	4	342	26	26	21	24	2.00
55734241--55734372	40	3.3	40	88	1	194	28	23	25	23	2.00
55734355--55734390	18	2.0	18	100	0	72	33	22	16	27	1.95
55734315--55734430	58	2.0	58	98	0	223	29	23	24	23	1.99
55740078--55740204	43	3.0	43	76	11	145	24	17	26	31	1.97
55742163--55742477	46	6.7	47	75	10	231	26	19	30	24	1.98
55746809--55747293	49	10.1	49	88	3	718	31	8	30	29	1.87
55746809--55747293	96	5.0	96	95	0	781	31	8	30	29	1.87
55755467--55755536	28	2.5	28	90	4	106	32	27	12	27	1.93
55759656--55759828	46	3.7	46	79	13	210	21	21	27	28	1.99
55759653--55759823	93	1.8	93	94	0	306	21	21	28	28	1.99
55765193--55765365	46	3.7	46	80	13	219	21	21	28	28	1.98
55765190--55765360	93	1.8	93	96	0	315	21	21	29	28	1.98
55770922--55771040	27	4.4	27	85	0	157	24	21	19	35	1.96
55777625--55777678	25	2.2	25	96	0	99	24	33	25	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55777716--55777775	27	2.3	26	85	2	75	35	20	23	21	1.96
55778515--55778633	54	2.2	54	89	3	177	25	18	18	37	1.93
55778516--55778633	27	4.4	27	85	0	146	25	18	18	37	1.94
55781281--55781397	46	2.6	44	82	10	130	28	23	26	22	1.99
55784144--55784319	46	3.8	46	79	12	216	20	21	29	28	1.98
55784141--55784312	93	1.8	93	96	0	317	20	21	29	27	1.98
55798119--55798143	10	2.5	10	100	0	50	68	0	0	32	0.90
55798244--55798273	12	2.5	12	88	0	51	6	23	0	70	1.11
55798372--55798449	34	2.3	33	81	12	97	37	1	5	56	1.30
55800412--55800553	22	6.2	22	74	11	115	19	2	33	45	1.63
55800463--55800548	45	1.9	44	88	2	127	20	0	31	47	1.51
55804235--55804351	27	4.3	27	80	4	119	38	17	17	25	1.92
55804536--55804623	27	3.3	26	84	4	113	19	21	21	37	1.94
55804741--55804803	6	10.3	6	74	16	58	19	19	12	49	1.79
55807110--55807142	15	2.2	15	89	10	50	54	30	3	12	1.52
55808858--55808933	24	3.3	22	67	13	62	32	10	19	36	1.86
55808843--55808934	48	1.9	48	95	0	166	32	9	21	35	1.86
55812929--55812963	18	1.9	18	100	0	70	28	34	11	25	1.91
55815866--55816010	40	3.6	40	83	4	175	26	24	25	24	2.00
55815917--55816035	40	3.0	40	82	1	114	23	21	28	26	1.99
55817760--55817984	40	5.7	40	85	5	278	24	22	27	25	2.00
55817799--55818016	79	2.8	80	81	6	196	27	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55822292--55822451	24	6.6	23	68	13	90	24	14	29	31	1.94
55837107--55837131	12	2.1	12	100	0	50	32	16	20	32	1.94
55857016--55857097	43	1.9	42	85	2	110	34	24	17	24	1.96
55859540--55859724	79	2.3	82	83	7	229	24	27	22	24	2.00
55859521--55859724	40	5.1	40	81	8	229	24	27	22	25	2.00
55864745--55864839	46	2.1	46	95	0	172	25	8	30	35	1.86
55871588--55871617	8	3.6	8	95	4	51	60	26	0	13	1.34
55873338--55873381	19	2.3	19	88	7	63	47	0	15	36	1.46
55884515--55884669	27	5.7	27	84	6	179	40	21	20	18	1.92
55884663--55884787	27	4.6	27	81	4	135	28	16	17	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325