genome.fa.s3.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  141  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45541664--45542230	208	2.7	209	95	2	987	55	4	4	35	1.42
45545318--45545474	7	21.9	7	68	10	75	40	38	0	21	1.53
45545323--45545390	22	3.4	21	69	26	67	39	44	0	16	1.48
45545341--45545371	15	2.1	15	93	0	53	48	35	0	16	1.46
45545319--45545405	37	2.4	36	92	5	147	42	40	0	17	1.49
45545355--45545412	22	2.6	21	76	10	53	41	39	0	18	1.51
45545394--45545485	35	2.6	35	82	0	94	39	35	0	25	1.56
45545540--45545576	7	5.3	7	93	0	65	40	35	0	24	1.55
45545536--45545576	21	1.9	22	95	5	75	43	34	0	21	1.53
45545529--45545595	15	4.6	14	81	3	53	44	32	1	20	1.61
45547627--45547673	21	2.2	21	96	0	85	6	8	44	40	1.60
45549938--45550045	26	4.2	26	91	0	180	33	7	23	36	1.83
45553637--45553727	45	2.0	45	97	0	173	36	7	18	37	1.80
45554289--45554324	18	2.0	18	100	0	72	38	5	22	33	1.77
45554877--45554981	44	2.4	44	84	3	124	20	21	26	30	1.98
45557026--45557079	24	2.3	24	77	3	56	25	1	3	68	1.16
45557739--45557773	18	2.0	18	88	5	54	37	0	0	62	0.95
45560803--45560860	22	3.0	21	76	19	54	18	0	32	48	1.49
45560768--45560825	16	3.7	15	70	17	55	15	0	32	51	1.44
45560827--45560867	16	2.6	16	88	0	64	17	0	34	48	1.47
45562485--45562619	48	2.8	46	85	6	164	52	5	8	32	1.57
45562753--45562849	11	8.9	11	75	6	72	43	1	18	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45562752--45562798	21	2.3	21	88	3	78	44	0	19	36	1.51
45562766--45562865	32	3.1	32	69	12	80	43	1	19	37	1.58
45570376--45570429	25	2.1	25	93	3	90	24	11	25	38	1.88
45572080--45572128	21	2.3	21	96	0	89	22	26	26	24	2.00
45575952--45576112	42	3.7	42	81	5	160	29	25	14	30	1.95
45576030--45576168	48	2.9	48	87	1	206	30	25	16	28	1.97
45576183--45576305	47	2.4	53	82	7	150	31	24	14	29	1.95
45585986--45586025	20	2.0	20	100	0	80	45	10	10	35	1.71
45588735--45588759	12	2.1	12	100	0	50	44	0	24	32	1.54
45594146--45594204	21	2.8	22	80	7	61	22	0	8	69	1.15
45594175--45594224	26	2.0	24	88	7	73	30	0	6	64	1.18
45595103--45595159	18	3.1	18	75	14	55	64	1	7	26	1.28
45595158--45595203	20	2.1	22	84	11	60	54	0	13	32	1.39
45598422--45598471	23	2.2	23	89	3	75	38	24	12	26	1.90
45599070--45599107	17	2.2	18	85	4	51	50	15	5	28	1.66
45599405--45599431	9	3.0	9	100	0	54	44	0	0	55	0.99
45599416--45599478	29	2.2	28	88	2	90	50	12	1	34	1.50
45599541--45599610	26	2.7	24	79	20	70	41	14	4	40	1.65
45599653--45599690	18	2.1	19	85	5	51	26	21	5	47	1.71
45606414--45606523	48	2.3	47	88	1	166	21	14	29	34	1.93
45606414--45606538	47	2.6	48	76	15	132	23	14	28	34	1.94
45613524--45613602	28	2.7	30	86	7	117	36	5	8	49	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45613495--45613626	30	4.4	30	78	12	112	35	4	13	46	1.64
45616371--45616588	40	5.5	40	90	2	289	25	28	22	22	1.99
45623934--45624442	47	10.7	47	94	1	840	32	8	29	29	1.87
45623955--45624442	239	2.1	237	94	1	845	32	8	29	29	1.87
45624561--45624639	37	2.1	37	90	0	122	24	18	31	25	1.98
45632069--45632103	17	1.9	19	88	11	56	37	17	5	40	1.73
45637720--45637821	47	2.2	47	94	0	177	22	22	27	27	1.99
45641006--45641043	19	2.0	19	100	0	76	31	15	26	26	1.96
45647519--45647543	12	2.1	12	100	0	50	0	24	8	68	1.16
45649270--45649420	43	3.6	41	79	11	144	25	20	25	27	1.99
45656892--45657017	43	2.9	44	74	10	125	30	19	22	28	1.98
45665114--45665533	48	8.8	48	86	0	554	26	16	28	28	1.97
45673018--45673488	48	9.8	48	83	2	543	26	16	27	29	1.97
45673018--45673488	144	3.3	142	85	3	604	26	16	27	29	1.97
45679797--45679875	31	2.5	31	93	0	140	26	24	18	30	1.98
45680093--45680164	26	2.8	26	91	2	110	27	22	23	26	1.99
45680214--45680320	20	5.3	20	91	6	164	31	17	10	40	1.83
45680231--45680327	9	9.8	10	66	16	51	32	17	9	40	1.81
45681015--45681080	27	2.5	28	80	14	77	28	22	18	30	1.97
45681028--45681091	27	2.4	27	81	5	76	25	25	14	35	1.93
45681123--45681230	27	3.9	26	77	15	92	33	6	16	43	1.74
45681197--45681309	27	4.2	27	80	6	131	29	7	21	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45681207--45681349	27	5.3	26	72	14	103	28	11	22	37	1.90
45681341--45681483	27	5.3	27	86	0	189	40	9	23	26	1.84
45685257--45685333	36	2.1	36	82	0	91	25	10	28	35	1.89
45687548--45687598	21	2.4	21	86	0	66	31	19	13	35	1.91
45687568--45687604	10	3.7	10	92	7	58	32	18	10	37	1.86
45687635--45687683	25	2.0	25	87	0	71	30	14	18	36	1.90
45709886--45709943	28	2.1	28	100	0	116	39	13	13	32	1.85
45716767--45717004	47	5.1	47	90	1	361	27	31	9	31	1.89
45716767--45717004	93	2.5	94	91	0	361	27	31	9	31	1.89
45720420--45720602	40	4.6	40	80	6	194	24	26	22	26	2.00
45720909--45720987	29	2.7	29	86	5	106	27	32	15	24	1.95
45720969--45721071	43	2.4	43	98	0	197	25	35	16	22	1.94
45723091--45723697	47	13.1	47	79	13	652	28	29	9	33	1.88
45727270--45727303	17	1.9	18	88	5	52	32	11	29	26	1.92
45730511--45730613	44	2.3	45	90	6	156	25	20	32	22	1.98
45730581--45730680	49	2.0	49	80	7	112	34	14	27	25	1.94
45756188--45756362	46	3.8	46	77	15	200	20	20	29	29	1.98
45760465--45760529	32	2.0	32	100	0	130	38	6	27	27	1.80
45760500--45760730	47	4.9	47	89	1	345	35	8	28	27	1.86
45769479--45769929	47	9.6	47	93	0	740	29	29	8	32	1.87
45769479--45769929	237	1.9	235	94	0	794	29	29	8	32	1.87
45769479--45769929	190	2.4	189	92	2	692	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45772634--45772809	46	3.8	46	77	14	191	20	20	28	30	1.98
45772631--45772800	93	1.8	93	93	2	297	21	21	28	28	1.98
45777863--45777895	12	2.8	12	100	0	66	0	33	36	30	1.58
45779912--45780207	47	6.3	47	93	0	484	28	30	8	33	1.86
45780030--45780152	22	5.3	22	63	18	70	26	30	9	33	1.89
45783641--45783745	28	3.7	27	76	12	95	31	30	16	21	1.95
45783779--45784100	40	8.1	40	94	1	531	28	27	19	24	1.99
45785764--45786016	47	5.4	47	92	0	407	28	30	7	32	1.86
45785886--45785961	22	3.3	22	66	16	64	26	30	10	32	1.90
45797915--45798033	47	2.5	47	94	0	193	31	26	17	24	1.97
45798507--45798565	30	2.0	30	86	0	82	27	27	6	38	1.81
45800100--45800161	27	2.3	27	83	5	72	24	22	17	35	1.95
45818949--45819300	47	7.6	47	94	2	595	32	7	30	28	1.85
45818949--45819300	91	3.8	93	94	1	609	32	7	30	28	1.85
45820713--45820832	39	3.0	40	96	2	224	23	20	30	25	1.99
45820806--45820855	23	2.2	23	100	0	100	26	22	26	26	2.00
45820767--45820895	63	2.1	62	94	4	224	24	20	27	26	1.99
45820727--45820934	103	2.0	102	92	0	344	24	22	27	25	2.00
45820829--45820966	40	3.5	40	84	0	186	24	22	27	25	2.00
45824983--45825159	47	3.7	47	90	4	302	33	7	28	30	1.84
45825142--45825174	15	2.2	15	100	0	66	33	12	27	27	1.92
45825095--45825220	62	2.0	61	96	1	234	32	9	30	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45825047--45825262	108	2.0	108	90	3	344	32	8	30	28	1.87
45825157--45825311	47	3.3	47	90	0	231	32	9	31	26	1.89
45828836--45828965	38	3.4	38	88	2	154	23	20	23	32	1.98
45833738--45833847	38	2.7	41	77	10	111	33	21	19	25	1.97
45837423--45837581	49	3.3	48	84	8	207	26	30	9	33	1.88
45837440--45837751	45	6.3	46	74	20	213	28	29	8	33	1.86
45837561--45837596	17	2.1	17	100	0	72	30	22	11	36	1.89
45837520--45837642	63	2.0	62	95	4	221	29	28	9	32	1.89
45837471--45837689	112	2.0	110	87	7	320	29	28	8	33	1.87
45837578--45837751	47	3.7	47	90	6	291	31	27	7	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325