genome.fa.s3.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  175  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56830684--56830747	31	2.1	31	87	0	92	26	23	12	37	1.90
56830962--56831132	25	7.1	23	87	5	216	28	22	21	27	1.99
56831179--56831249	20	3.5	20	92	0	115	33	21	9	35	1.86
56831179--56831249	9	7.0	11	71	18	64	33	21	9	35	1.86
56832467--56832546	27	3.0	27	78	10	78	23	23	18	33	1.97
56832553--56833037	27	17.9	27	77	6	214	34	8	18	37	1.83
56836774--56836808	11	3.5	10	88	11	54	40	0	11	48	1.39
56838382--56838450	28	2.5	28	86	9	88	31	24	14	28	1.95
56843173--56843396	40	5.7	40	81	7	224	25	28	20	25	1.99
56843328--56843405	40	1.9	41	82	10	97	26	28	20	24	1.99
56851110--56851334	40	5.7	40	82	6	233	25	28	21	25	1.99
56851266--56851343	40	1.9	41	82	10	97	26	28	20	24	1.99
56856746--56856794	22	2.2	22	92	0	80	38	18	6	36	1.76
56856754--56856805	22	2.3	22	83	3	59	34	21	3	40	1.71
56863510--56863605	43	2.2	43	94	0	174	21	41	21	14	1.89
56864412--56864462	15	3.2	17	73	21	65	47	15	0	37	1.46
56864422--56864468	15	3.1	15	72	22	53	42	17	0	40	1.49
56864411--56864468	30	1.9	30	100	0	116	44	15	0	39	1.47
56865904--56866110	53	3.8	54	76	1	200	19	24	18	37	1.94
56867350--56867462	43	2.6	42	77	12	113	30	23	18	26	1.98
56876842--56876980	48	2.9	49	85	3	201	30	24	19	25	1.98
56878425--56878597	45	3.8	46	77	13	178	21	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56885949--56886075	47	2.7	46	90	2	200	22	21	26	29	1.99
56888576--56888612	17	2.2	17	90	9	58	72	5	5	16	1.21
56891401--56891464	32	2.0	32	90	0	101	29	7	7	54	1.57
56891876--56891986	48	2.3	49	80	9	120	35	2	9	53	1.47
56892215--56892543	82	4.1	82	82	3	380	30	12	11	45	1.77
56892251--56892543	159	1.8	159	85	0	406	30	11	11	46	1.76
56892251--56892581	159	2.1	159	82	1	394	29	11	11	47	1.75
56893382--56893457	36	2.1	36	95	0	134	55	10	9	25	1.63
56895616--56895726	27	4.1	27	86	5	145	37	22	22	17	1.94
56899622--56899668	8	5.9	8	84	0	67	6	25	21	46	1.74
56899622--56899668	16	2.9	16	90	0	76	6	25	21	46	1.74
56905449--56905670	40	5.6	40	89	1	322	24	21	25	28	1.99
56913788--56913814	3	9.0	3	100	0	54	33	0	0	66	0.92
56915016--56915057	21	2.0	21	90	0	66	71	2	14	11	1.24
56916502--56916652	28	5.4	28	92	1	223	25	11	28	33	1.92
56922187--56922239	27	2.0	27	85	3	72	28	11	20	39	1.87
56924060--56924293	45	5.2	45	85	4	305	22	21	28	27	1.99
56927319--56927383	15	4.4	15	75	22	66	10	13	12	63	1.53
56928681--56928816	49	2.7	50	86	4	186	24	16	29	29	1.97
56935538--56935809	47	5.7	47	92	1	418	34	7	28	29	1.85
56935538--56935809	96	2.9	94	91	2	418	34	7	28	29	1.85
56935538--56935804	143	1.9	143	91	0	435	34	7	28	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56937185--56937496	40	7.8	40	94	0	534	25	22	27	25	2.00
56937672--56937723	25	2.1	25	85	7	70	28	7	32	30	1.85
56941423--56941501	25	3.3	25	61	10	65	32	5	29	32	1.79
56941376--56941643	47	5.8	47	94	3	456	32	8	29	29	1.86
56941376--56941643	93	2.9	94	93	3	456	32	8	29	29	1.86
56944000--56944497	139	3.5	142	91	4	796	29	29	8	33	1.86
56944000--56944497	47	10.6	47	90	5	749	29	29	8	33	1.86
56944700--56944857	39	4.1	39	82	8	180	25	27	22	25	2.00
56948242--56948508	39	6.8	40	90	2	405	24	28	22	23	1.99
56948242--56948508	79	3.4	78	90	3	401	24	28	22	23	1.99
56950731--56951237	49	10.6	49	91	3	795	28	29	8	33	1.87
56950731--56951237	96	5.3	96	93	1	856	28	29	8	33	1.87
56951443--56951555	40	2.8	39	80	6	113	27	27	21	23	1.99
56951462--56951604	40	3.6	40	80	5	146	26	27	21	23	1.99
56955733--56955854	43	2.8	44	82	4	151	27	18	23	31	1.97
56955739--56955879	43	3.3	42	75	16	146	29	16	23	31	1.96
56957611--56957786	46	3.8	45	78	10	194	22	21	28	28	1.99
56957607--56957778	93	1.8	93	92	0	290	22	21	29	27	1.99
56969465--56969496	16	2.0	16	100	0	64	31	0	31	37	1.58
56975878--56975971	28	3.2	27	71	21	82	26	29	18	25	1.98
56975859--56976010	60	2.5	60	79	13	161	28	26	17	26	1.98
56978563--56978609	18	2.7	18	78	15	53	70	4	8	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56983049--56983148	37	2.7	37	92	0	164	25	32	18	25	1.97
56983292--56983956	48	13.9	48	95	0	1170	31	28	6	33	1.83
56992392--56992451	30	2.0	30	87	6	86	40	6	25	28	1.80
56997654--56997693	20	1.9	19	85	14	53	35	2	25	37	1.69
56999465--56999517	26	2.0	28	82	14	67	20	0	35	43	1.52
57007647--57007688	21	2.0	22	86	13	61	35	4	23	35	1.76
57011339--57011369	8	3.9	8	91	0	53	41	25	25	6	1.79
57011335--57011370	16	2.2	16	100	0	72	50	22	22	5	1.70
57011335--57011377	16	2.7	16	92	0	59	51	20	20	6	1.71
57011611--57011686	29	2.7	28	83	4	98	31	11	28	27	1.92
57011611--57011695	28	3.0	28	82	3	98	29	11	30	28	1.92
57019003--57019193	40	4.8	40	88	2	260	23	24	29	23	1.99
57027071--57027254	40	4.6	40	87	4	239	23	24	27	24	2.00
57028732--57028770	16	2.4	17	91	4	62	48	35	5	10	1.59
57030286--57030387	29	3.6	29	86	1	143	26	15	29	28	1.96
57030286--57030396	58	1.9	57	87	1	159	27	16	29	27	1.97
57036469--57036505	16	2.3	16	90	0	56	62	8	8	21	1.49
57043173--57043203	14	2.3	13	94	5	53	61	12	6	19	1.53
57046720--57046937	40	5.5	40	91	2	307	23	22	27	25	2.00
57054799--57055016	40	5.5	40	91	2	316	23	22	27	26	1.99
57056482--57056581	29	3.5	29	81	1	121	27	15	31	27	1.95
57068672--57068853	38	4.7	39	85	8	237	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57068672--57068853	78	2.3	79	85	8	239	24	22	28	24	2.00
57068723--57068886	79	2.1	77	85	5	213	26	21	27	25	1.99
57076564--57076747	40	4.7	40	87	5	234	25	21	27	25	1.99
57076615--57076780	80	2.1	79	85	5	219	26	20	27	25	1.99
57090731--57090881	28	5.4	28	91	1	223	34	27	11	26	1.91
57093297--57093328	8	4.0	8	91	0	55	34	25	28	12	1.92
57093542--57093613	27	2.7	27	82	4	92	36	16	18	29	1.93
57093646--57093983	27	12.5	26	76	11	180	39	20	10	29	1.86
57093620--57093989	54	6.8	54	76	5	259	39	21	10	28	1.86
57093646--57093879	81	2.9	80	77	8	215	38	22	10	28	1.87
57093701--57093992	81	3.6	81	74	5	203	38	20	10	30	1.86
57094023--57094114	27	3.4	27	83	3	105	32	20	23	22	1.98
57094255--57094341	27	3.2	26	82	6	93	19	21	20	37	1.94
57097316--57097351	16	2.2	17	95	5	65	66	13	8	11	1.44
57097359--57097389	16	1.9	16	93	0	53	12	32	12	41	1.81
57101247--57101293	21	2.2	21	88	0	67	19	21	23	36	1.95
57110982--57111143	39	4.1	39	86	2	175	32	30	19	17	1.95
57111216--57111287	28	2.6	28	84	0	90	29	26	12	31	1.93
57113214--57113245	16	2.0	16	100	0	64	18	31	12	37	1.88
57114100--57114322	39	5.7	39	91	1	340	29	29	22	18	1.97
57114395--57114460	28	2.4	28	84	0	87	27	24	10	37	1.88
57114418--57114476	28	2.1	28	80	0	64	30	25	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57117292--57117394	48	2.1	48	96	0	188	39	24	8	27	1.84
57136285--57136447	40	4.1	40	89	4	224	24	29	24	21	1.99
57136285--57136447	79	2.0	80	86	5	224	24	29	24	21	1.99
57141366--57141399	13	2.6	13	90	0	50	41	0	11	47	1.40
57144294--57144457	78	2.1	78	82	5	190	26	29	21	21	1.99
57144346--57144457	39	2.9	39	94	0	197	27	30	22	19	1.98
57146344--57146551	79	2.6	79	79	8	226	26	26	21	25	1.99
57146358--57146552	40	4.9	40	82	7	218	26	27	22	24	2.00
57157245--57157282	19	2.0	19	85	10	51	68	0	10	21	1.19
57162545--57162659	29	4.0	28	81	8	133	27	27	14	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325