genome.fa.s3.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  138  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44589297--44589326	9	3.3	9	100	0	60	60	10	10	20	1.57
44591983--44592032	20	2.5	20	100	0	100	34	10	26	30	1.89
44593218--44593363	65	2.2	65	95	0	256	44	30	8	16	1.77
44594075--44594161	34	2.5	35	81	5	97	20	25	26	27	1.99
44605142--44605212	29	2.6	28	76	8	74	28	18	12	40	1.87
44605142--44605225	27	3.1	26	75	9	71	26	17	14	41	1.88
44606617--44606958	171	2.0	171	98	0	657	32	10	26	29	1.90
44608740--44608818	37	2.1	37	86	9	108	26	30	17	25	1.97
44608937--44609446	141	3.5	141	85	8	696	28	29	8	32	1.87
44609256--44609287	16	2.0	16	100	0	64	18	25	18	37	1.94
44609209--44609334	63	2.0	63	100	0	252	26	28	11	33	1.91
44608937--44609271	47	7.1	47	94	0	526	28	30	9	32	1.88
44609162--44609381	110	2.0	110	100	0	440	28	29	10	32	1.89
44609115--44609430	157	2.0	158	96	1	580	29	28	9	32	1.88
44609272--44609446	47	3.7	47	94	3	296	30	28	8	33	1.86
44616686--44616771	43	2.0	43	84	4	111	27	27	17	26	1.98
44618311--44618429	43	2.8	43	81	1	141	20	17	31	31	1.96
44620258--44620329	36	2.0	36	100	0	144	38	13	13	33	1.85
44638469--44638596	47	2.7	46	90	4	202	32	28	15	23	1.95
44639479--44639505	6	4.5	6	100	0	54	0	0	29	70	0.88
44640939--44640984	24	1.9	24	95	0	83	45	21	13	19	1.84
44641029--44641095	26	2.6	26	85	4	91	40	20	22	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44648072--44648139	29	2.3	29	85	5	93	27	30	13	27	1.94
44648241--44648319	29	2.7	30	82	13	110	30	30	13	25	1.94
44647962--44648313	174	2.0	173	89	1	535	31	24	13	30	1.94
44656238--44656305	29	2.3	29	85	5	93	27	30	13	27	1.94
44656407--44656485	29	2.7	30	82	13	110	29	30	15	25	1.96
44659809--44659875	24	2.8	24	86	2	98	43	19	20	16	1.88
44659912--44659963	27	1.9	27	92	0	86	42	15	23	19	1.89
44665947--44665988	22	1.9	22	85	9	59	40	16	0	42	1.48
44669240--44669349	27	4.1	27	80	12	129	28	10	21	40	1.86
44682786--44682879	37	2.6	37	80	8	102	13	9	32	43	1.77
44688488--44688525	19	2.0	19	100	0	76	5	21	36	36	1.76
44690483--44690561	42	1.9	39	85	7	104	37	13	12	35	1.83
44692855--44692897	22	2.0	22	100	0	86	11	23	18	46	1.82
44695628--44695682	27	2.1	27	83	10	69	20	21	18	40	1.92
44713194--44713218	10	2.5	10	100	0	50	60	28	0	12	1.32
44715006--44715193	40	4.7	40	90	3	299	25	27	23	24	2.00
44724308--44724495	40	4.7	40	89	3	290	25	27	22	24	2.00
44724275--44724495	119	1.9	119	86	5	322	24	26	22	25	2.00
44726467--44726524	24	2.4	24	88	0	89	37	17	24	20	1.93
44736315--44736469	43	3.6	42	77	9	152	32	23	14	28	1.95
44748709--44748734	12	2.2	12	100	0	52	26	23	0	50	1.50
44751882--44751909	12	2.3	12	100	0	56	50	0	14	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44753656--44753681	12	2.2	12	100	0	52	30	15	15	38	1.88
44754308--44754603	151	2.0	151	94	0	520	36	7	22	32	1.83
44755499--44755622	62	2.1	57	83	10	151	52	4	4	39	1.39
44756035--44756074	19	2.1	19	86	9	55	32	2	5	60	1.32
44758155--44758202	14	3.6	14	75	25	50	47	2	8	41	1.45
44761334--44761508	46	3.8	45	75	10	174	22	21	27	29	1.99
44761331--44761502	93	1.8	93	89	0	272	22	21	27	27	1.99
44764633--44764958	48	6.8	48	83	4	365	28	17	26	27	1.98
44764636--44764958	144	2.2	144	85	3	409	28	17	26	27	1.98
44764633--44764958	96	3.4	96	86	1	431	28	17	26	27	1.98
44780733--44781181	47	9.5	47	95	0	790	32	8	29	29	1.87
44786706--44786746	18	2.3	18	86	0	55	48	2	0	48	1.14
44791531--44791692	50	3.3	50	80	4	150	30	24	19	25	1.98
44800118--44800380	40	6.6	40	87	3	316	26	28	20	24	1.99
44805741--44805804	32	2.0	32	100	0	128	25	28	12	34	1.92
44825794--44825819	13	2.0	13	100	0	52	46	7	7	38	1.61
44828476--44828785	71	4.4	70	78	4	181	34	19	23	23	1.96
44828417--44828775	72	5.0	69	77	4	259	35	19	22	23	1.96
44833346--44833882	49	11.1	49	94	2	944	32	8	29	29	1.87
44833346--44833882	145	3.7	145	95	2	954	32	8	29	29	1.87
44833346--44833882	194	2.8	194	94	2	945	32	8	29	29	1.87
44834001--44834078	36	2.1	37	90	2	122	24	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44835944--44836046	43	2.4	43	100	0	206	22	15	35	26	1.94
44836028--44836101	29	2.6	29	86	4	96	27	16	31	25	1.96
44836453--44836557	39	2.6	40	80	7	124	28	21	26	22	1.99
44836532--44836728	40	4.9	40	88	0	268	24	22	27	25	2.00
44840191--44840817	49	13.1	49	95	3	1093	31	8	29	29	1.87
44840936--44841014	37	2.1	37	90	0	122	24	18	31	25	1.98
44847037--44847067	16	1.9	16	93	0	53	35	12	9	41	1.76
44852312--44852380	30	2.3	30	89	0	102	17	34	27	20	1.95
44853225--44853414	21	9.0	21	82	1	220	40	17	26	15	1.89
44853225--44853403	42	4.3	42	89	0	268	40	17	25	15	1.89
44865662--44865882	40	5.6	40	91	2	331	21	27	23	27	1.99
44875495--44875615	50	2.4	52	87	2	174	37	14	14	33	1.87
44875639--44875719	39	2.1	39	90	0	126	46	17	8	27	1.77
44875714--44875747	9	3.8	9	88	0	50	67	8	2	20	1.31
44878006--44878047	21	2.0	21	85	0	57	21	16	42	19	1.89
44880181--44880239	29	2.0	30	86	3	84	28	25	6	38	1.81
44883519--44883568	25	2.0	25	96	0	91	34	18	4	44	1.68
44888072--44888101	11	2.7	11	94	0	51	26	16	3	53	1.59
44891789--44891860	21	3.5	21	77	7	67	40	16	23	19	1.91
44892959--44893000	21	2.0	21	85	0	57	45	14	9	30	1.77
44896196--44896220	11	2.3	11	100	0	50	8	12	8	72	1.29
44901279--44901327	19	2.5	19	76	6	53	46	22	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44902901--44902946	23	2.0	23	100	0	92	47	13	4	34	1.62
44902932--44903065	39	3.3	40	65	28	104	39	18	9	32	1.83
44902913--44903071	81	2.0	81	100	0	318	39	18	9	32	1.83
44907201--44907273	31	2.4	31	86	2	94	30	13	9	46	1.75
44908067--44908101	16	2.2	16	94	0	61	54	11	5	28	1.59
44908931--44909010	31	2.6	31	80	9	85	47	15	11	26	1.78
44920503--44920546	22	2.0	21	91	4	70	40	18	9	31	1.81
44925528--44925597	21	3.3	21	65	0	59	20	17	40	22	1.92
44925518--44925640	42	2.9	42	88	0	165	23	17	35	23	1.95
44925583--44925644	21	3.0	21	66	17	56	17	17	37	27	1.93
44928980--44929051	36	2.0	36	100	0	144	50	11	11	27	1.72
44932459--44932483	13	1.9	13	100	0	50	48	0	20	32	1.50
44932959--44933095	48	2.9	48	85	4	186	29	19	24	27	1.99
44936663--44936841	39	4.5	39	90	1	268	29	28	22	19	1.98
44941232--44941452	40	5.6	40	89	2	297	23	22	27	26	2.00
44941232--44941442	79	2.7	80	85	5	286	23	21	27	27	1.99
44942720--44942789	36	1.9	36	100	0	140	25	25	24	24	2.00
44949183--44949404	40	5.6	40	89	3	317	23	23	27	25	2.00
44950945--44950988	18	2.4	18	84	0	52	9	15	2	72	1.19
44958719--44958755	18	2.1	18	100	0	74	40	21	21	16	1.91
44961612--44961796	79	2.3	81	83	9	229	25	27	22	24	2.00
44961612--44961796	40	4.7	40	80	12	211	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44970620--44970668	26	1.9	25	88	12	73	34	16	6	42	1.73
44972050--44972195	48	3.0	48	86	4	204	28	15	24	31	1.96
44975746--44975893	49	3.0	50	80	5	174	27	24	20	27	1.99
44982057--44982213	43	3.7	42	78	10	149	24	18	24	32	1.97
44983174--44983225	22	2.4	22	100	0	104	15	32	40	11	1.83
44984791--44984841	22	2.3	22	89	0	84	41	9	13	35	1.78
44987150--44987240	25	3.7	25	92	1	148	27	27	21	23	1.99
44987150--44987256	25	4.4	24	89	3	108	29	24	21	24	1.99
44988817--44988943	47	2.7	46	81	11	152	29	18	29	23	1.97
44988916--44989087	47	3.7	46	76	9	152	29	18	28	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325