genome.fa.s3.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  106  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34148031--34148077	17	2.8	17	90	0	76	36	21	19	23	1.95
34148274--34148387	44	2.6	44	88	0	156	30	23	21	23	1.99
34149362--34149418	30	1.9	30	89	7	89	40	7	22	29	1.80
34156948--34157015	20	3.4	20	89	0	109	13	30	35	20	1.91
34160215--34160252	19	2.0	19	94	0	67	34	5	28	31	1.80
34161146--34161180	10	3.4	10	84	7	52	54	0	0	45	0.99
34161370--34161407	16	2.3	17	95	4	69	26	5	13	55	1.59
34161556--34161597	20	2.1	20	86	0	57	40	7	0	52	1.29
34162252--34162308	4	14.2	4	92	0	96	50	22	1	24	1.58
34162742--34162788	2	23.5	2	100	0	94	51	0	48	0	1.00
34188732--34189030	40	7.5	40	88	3	390	25	28	22	23	1.99
34198393--34198435	11	3.6	11	77	17	50	32	23	0	44	1.54
34198386--34198438	25	2.1	25	100	0	106	33	18	0	47	1.49
34211153--34211473	46	7.0	46	89	2	439	38	15	24	21	1.92
34215695--34215786	46	2.0	46	97	0	175	33	30	5	30	1.80
34217241--34217484	51	4.9	51	84	2	280	28	24	20	26	1.99
34217241--34217486	100	2.5	98	82	5	298	28	24	20	26	1.99
34218927--34219082	43	3.6	43	72	9	131	30	24	17	26	1.97
34222541--34222587	24	2.0	24	87	8	69	55	17	0	27	1.42
34228775--34228841	28	2.4	28	82	5	82	31	22	20	25	1.98
34228996--34229055	27	2.3	27	79	2	68	41	20	20	18	1.90
34234568--34234641	27	2.7	27	78	0	76	39	16	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34234769--34234820	27	2.0	26	84	3	68	23	23	17	36	1.95
34237775--34237906	40	3.3	39	78	9	142	24	21	25	28	1.99
34238134--34238175	22	1.9	22	85	9	59	33	9	14	42	1.78
34245641--34245777	40	3.4	39	77	9	143	24	21	26	27	1.99
34246005--34246046	22	1.9	22	85	9	59	33	9	14	42	1.78
34249642--34249705	27	2.4	27	84	7	78	37	17	18	26	1.93
34250048--34250147	33	3.2	30	75	18	89	26	23	23	28	1.99
34250069--34250147	33	2.6	28	80	17	104	25	25	25	24	2.00
34252082--34252240	43	3.7	42	78	8	160	23	16	27	32	1.96
34254704--34254796	25	3.8	25	80	9	93	33	21	15	30	1.94
34258234--34258417	40	4.6	40	85	2	253	25	22	26	25	2.00
34258234--34258453	80	2.8	80	84	5	270	25	22	26	25	2.00
34262535--34262733	51	3.9	51	88	1	292	28	27	14	30	1.95
34262757--34262874	52	2.3	52	92	0	200	27	22	14	36	1.92
34262757--34262872	24	4.4	27	81	15	145	26	22	14	36	1.93
34266497--34266545	24	1.9	26	88	12	75	48	10	4	36	1.56
34268954--34269036	25	3.3	25	75	0	103	27	21	21	28	1.99
34268954--34269068	50	2.3	50	84	0	158	26	20	23	29	1.98
34270883--34270924	22	1.9	22	100	0	84	47	14	11	26	1.78
34278791--34278842	24	2.2	24	96	0	95	21	5	32	40	1.77
34281878--34281909	15	2.0	17	88	11	50	25	0	31	43	1.55
34283648--34283678	15	2.1	15	93	0	53	35	9	25	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34306835--34306879	19	2.4	19	96	0	81	24	26	22	26	2.00
34307698--34307740	2	21.5	2	85	0	59	58	41	0	0	0.98
34309257--34309554	114	2.6	113	81	5	275	38	10	31	19	1.85
34309297--34309554	114	2.3	114	83	3	317	38	10	30	20	1.86
34319787--34319888	43	2.4	43	83	4	129	29	27	17	25	1.98
34323407--34323623	40	5.5	40	89	4	293	25	29	23	22	1.99
34332428--34332529	43	2.4	43	83	4	129	29	27	17	25	1.98
34336044--34336258	39	5.5	40	90	4	298	24	29	23	22	1.99
34336044--34336258	79	2.7	78	88	5	294	24	29	23	22	1.99
34344123--34344340	40	5.5	40	85	4	257	25	28	22	23	1.99
34352949--34353018	5	12.8	5	74	16	52	7	18	0	74	1.04
34352949--34353019	17	3.9	17	83	16	97	7	18	0	74	1.03
34352951--34353043	40	2.3	40	96	1	170	8	19	0	72	1.10
34352976--34353039	18	3.3	18	75	12	65	10	18	0	70	1.16
34352976--34353040	19	3.3	19	73	14	69	10	18	0	70	1.15
34354564--34354589	13	2.0	13	100	0	52	30	38	23	7	1.83
34355905--34355994	29	3.1	29	87	1	119	32	27	11	28	1.91
34357357--34357394	20	1.9	20	94	0	67	39	31	0	28	1.57
34364281--34364363	43	1.9	43	82	0	103	20	19	32	27	1.97
34366116--34366156	21	2.0	21	85	0	55	36	9	0	53	1.34
34366782--34367198	46	8.8	47	75	9	260	24	29	17	28	1.98
34366782--34366956	94	1.9	95	89	3	273	24	30	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34369923--34369999	36	2.1	37	92	2	129	16	20	31	31	1.95
34385001--34385031	3	10.3	3	100	0	62	0	0	64	35	0.94
34385504--34386022	257	2.0	258	96	0	968	40	12	16	30	1.86
34399848--34400121	28	9.8	28	76	3	214	24	24	12	38	1.89
34412283--34412698	213	2.0	213	95	0	742	36	18	7	37	1.79
34414590--34415005	213	2.0	213	95	0	742	35	18	8	37	1.81
34423886--34423911	13	2.0	13	100	0	52	7	7	61	23	1.49
34424957--34425074	25	4.6	25	77	5	119	36	27	13	22	1.92
34425887--34425928	4	10.5	4	84	0	57	23	2	2	71	1.10
34430913--34431309	28	14.1	28	76	6	327	26	25	12	34	1.92
34431310--34431373	28	2.3	28	91	0	101	18	29	14	37	1.90
34436601--34436629	10	2.9	10	100	0	58	51	6	0	41	1.28
34437756--34437866	54	2.1	54	98	0	213	32	18	7	42	1.77
34448420--34448445	13	2.0	13	100	0	52	38	7	7	46	1.61
34448896--34448937	20	2.0	21	90	4	68	50	0	19	30	1.48
34449419--34449527	32	3.3	32	80	8	121	32	11	25	31	1.90
34449432--34449529	33	3.0	33	78	12	112	32	11	25	30	1.91
34452849--34453067	40	5.5	39	86	1	258	22	23	27	26	2.00
34452849--34453067	120	1.8	120	86	3	316	22	23	27	26	2.00
34458228--34458352	32	3.9	32	81	6	162	29	10	25	34	1.89
34458195--34458398	65	3.1	64	87	6	207	33	12	23	31	1.91
34458273--34458384	33	3.4	33	79	7	147	33	9	23	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34461155--34461207	21	2.5	21	81	0	61	39	18	20	20	1.92
34462044--34462147	38	2.8	36	73	15	86	36	27	18	17	1.93
34462131--34462240	39	2.8	39	90	0	166	30	26	21	20	1.98
34462124--34462263	39	3.6	39	83	2	131	30	26	23	19	1.98
34464572--34464611	20	2.0	21	85	5	55	42	0	20	37	1.52
34464956--34464989	17	2.0	17	100	0	68	35	0	11	52	1.38
34467021--34467245	79	2.8	78	81	10	267	24	26	22	26	2.00
34467021--34467245	119	1.9	120	82	9	291	24	26	22	26	2.00
34467002--34467245	40	6.1	39	83	8	246	24	26	22	27	2.00
34471187--34471341	57	2.7	58	76	7	156	30	22	16	30	1.96
34481402--34481438	19	2.0	19	89	5	58	54	10	2	32	1.49
34482290--34482344	28	1.9	28	81	3	65	38	1	1	58	1.20
34482290--34482333	20	2.3	18	80	11	52	36	2	2	59	1.23
34483286--34483310	4	6.2	4	100	0	50	24	76	0	0	0.80
34489420--34489446	13	2.1	13	100	0	54	22	0	0	77	0.76
34498092--34498261	41	4.2	40	74	18	152	22	21	27	28	1.99
34505654--34505682	14	2.1	14	100	0	58	44	6	13	34	1.71
34506185--34506211	10	2.7	10	100	0	54	29	0	11	59	1.32
34517203--34517257	28	2.0	28	82	6	69	23	12	36	27	1.91
34521098--34521315	40	5.5	40	92	1	332	23	22	27	26	2.00
34526204--34526313	37	3.0	37	91	0	166	27	30	18	24	1.98
34526432--34526693	47	5.6	47	93	0	434	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34528594--34528618	13	1.9	13	100	0	50	36	16	16	32	1.90
34531445--34531553	37	3.0	37	90	1	157	27	29	18	24	1.98
34531670--34531926	47	5.6	47	89	5	391	29	30	7	32	1.86
34539576--34539726	40	3.8	40	90	3	234	23	23	29	23	1.99
34539576--34539726	79	1.9	79	90	4	223	23	23	29	23	1.99
34543163--34543351	40	4.8	40	88	1	265	24	21	25	28	1.99
34546850--34546998	66	2.2	66	82	7	176	32	17	28	21	1.96
34546874--34547056	66	2.8	64	79	7	210	29	17	30	22	1.97
34550618--34550795	27	6.6	27	79	3	115	28	28	16	26	1.97
34550618--34550795	54	3.3	55	80	10	204	28	28	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325