Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  117  of  325  ( 38900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37803624--37803661
15
2.5
15
91
4
58
78
5
7
7
1.07
37803623--37803662
16
2.5
17
84
12
57
80
5
7
7
1.03
37809240--37809356
50
2.3
52
86
2
157
36
13
15
34
1.87
37811930--37812067
45
3.0
45
87
3
188
21
17
23
37
1.94
37812742--37812816
37
2.0
37
86
0
105
33
9
25
32
1.88
37826230--37826274
14
3.3
14
78
6
56
35
0
15
48
1.45
37827257--37827314
29
2.0
29
93
0
98
43
29
0
27
1.55
37827263--37827310
15
3.3
15
73
5
53
43
27
0
29
1.55
37830136--37830180
14
3.3
14
78
6
56
35
0
15
48
1.45
37831157--37831214
29
2.0
29
93
0
98
43
29
0
27
1.55
37831163--37831210
15
3.3
15
73
5
53
43
27
0
29
1.55
37832553--37832633
39
2.1
39
88
0
117
46
16
9
27
1.78
37837882--37838035
45
3.4
45
87
1
211
30
27
18
23
1.98
37842558--37842675
27
4.4
27
87
4
148
26
22
16
33
1.96
37844974--37845244
96
2.8
96
86
2
355
26
29
17
26
1.97
37844974--37845390
49
8.7
47
72
12
280
25
29
17
27
1.97
37847098--37847130
16
1.9
18
88
11
52
18
12
18
51
1.76
37851639--37851675
19
1.9
19
88
0
56
32
5
2
59
1.34
37853239--37853271
14
2.2
16
89
10
52
21
15
12
51
1.75
37854502--37854547
24
1.9
24
81
0
56
34
23
23
17
1.96
37862880--37863238
118
3.0
117
92
4
587
33
15
19
31
1.93
37862882--37863239
119
3.0
118
92
2
592
34
15
19
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37863164--37863404
83
2.9
83
89
1
367
34
16
19
30
1.93
37863164--37863464
83
3.7
81
81
9
328
33
16
20
29
1.94
37865103--37865152
19
2.7
19
84
6
68
26
4
2
68
1.18
37865169--37865202
15
2.3
15
90
5
52
32
0
5
61
1.20
37865182--37865307
18
6.9
18
72
16
91
34
4
1
59
1.28
37865233--37865297
21
3.1
21
80
10
80
35
3
0
61
1.12
37865244--37865293
23
2.1
24
85
10
68
38
4
0
58
1.17
37865657--37865682
7
3.7
7
100
0
52
42
0
0
57
0.98
37866951--37867134
50
3.8
50
79
13
222
24
31
19
25
1.98
37869995--37870165
92
1.8
93
91
1
281
28
29
21
21
1.98
37869987--37870161
46
3.8
46
76
14
189
29
28
20
21
1.98
37875759--37876075
46
6.7
46
73
14
179
24
30
17
26
1.97
37875904--37876072
92
1.8
93
83
8
229
22
30
18
27
1.98
37878218--37878271
26
2.1
26
100
0
108
50
11
7
31
1.66
37880056--37880096
17
2.4
17
87
0
55
21
39
17
21
1.93
37890715--37890919
27
7.6
27
86
3
259
26
15
27
30
1.96
37890716--37890919
109
1.9
108
89
3
320
26
15
27
30
1.96
37898669--37898873
27
7.6
27
85
4
252
26
15
28
29
1.96
37902120--37902322
38
5.2
40
77
13
131
23
20
30
26
1.98
37902143--37902282
37
3.6
39
81
12
146
21
21
30
27
1.98
37902143--37902320
38
4.6
38
79
12
152
22
21
29
26
1.99
37907498--37907706
40
5.3
39
86
5
233
24
21
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37907498--37907706
79
2.6
79
84
4
269
24
21
28
25
1.99
37907446--37907741
79
3.7
80
80
7
221
26
20
28
24
1.99
37907481--37907741
119
2.2
119
80
4
287
26
20
27
24
1.99
37909880--37909924
14
3.3
14
78
6
56
48
15
0
35
1.45
37919815--37919860
18
2.5
19
75
13
51
58
6
0
34
1.24
37925551--37925755
27
7.6
27
85
3
250
27
15
27
29
1.96
37928222--37928269
20
2.4
20
75
0
60
20
29
18
31
1.97
37932059--37932155
30
3.2
30
77
2
106
28
15
26
28
1.96
37932338--37932383
20
2.3
19
82
10
56
17
21
19
41
1.90
37938984--37939016
16
2.0
17
88
5
50
33
12
27
27
1.92
37948830--37948863
15
2.3
15
89
0
50
23
14
17
44
1.86
37949499--37949558
21
3.0
20
78
7
68
20
23
18
38
1.93
37949505--37949543
20
1.9
20
94
5
69
17
20
23
38
1.93
37956198--37956356
27
5.9
27
80
11
166
34
21
23
20
1.96
37956198--37956359
54
3.0
54
89
2
229
34
21
24
19
1.96
37958316--37958412
30
3.2
30
76
2
106
27
16
27
27
1.97
37960575--37960605
12
2.6
12
100
0
62
25
16
12
45
1.83
37960653--37960709
5
11.0
5
75
20
55
3
17
1
77
1.00
37960653--37960709
16
3.7
14
82
15
60
3
17
1
77
1.00
37960653--37960720
21
3.2
21
76
15
61
2
17
2
76
1.04
37963275--37963362
30
2.9
30
77
3
106
27
18
28
26
1.98
37965085--37965149
15
4.4
15
76
16
64
10
12
13
63
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37965081--37965149
30
2.3
31
80
14
83
10
11
17
60
1.57
37967287--37967426
50
2.8
50
83
1
181
27
18
27
27
1.98
37970350--37970390
12
3.5
11
87
9
55
75
2
19
2
1.03
37973318--37973392
39
1.9
39
100
0
150
40
5
24
30
1.77
37975220--37975267
14
3.4
14
85
0
60
43
6
31
18
1.75
37980801--37980839
20
2.0
20
94
0
69
12
2
5
79
1.00
37980802--37980856
20
2.8
20
83
5
58
12
3
5
78
1.06
37985766--37985836
21
3.3
21
79
16
76
78
2
16
1
0.94
37985766--37985836
6
13.4
5
81
14
65
78
2
16
1
0.94
37985755--37985836
27
3.0
26
81
10
94
78
3
17
1
0.97
37985766--37985836
10
6.7
10
75
20
65
78
2
16
1
0.94
37985766--37985836
15
4.5
15
77
18
65
78
2
16
1
0.94
37985882--37985912
12
2.6
12
94
0
53
45
12
12
29
1.80
37985915--37985939
12
2.1
12
100
0
50
76
0
16
8
1.02
37985909--37985964
18
3.1
18
76
5
51
69
3
19
7
1.27
37985915--37985996
30
2.7
31
81
5
105
64
1
21
12
1.33
37986820--37986863
22
2.0
22
95
0
79
34
4
36
25
1.76
37991773--37991825
23
2.4
22
76
20
56
9
18
1
69
1.25
37994164--37994196
4
8.0
4
96
3
57
72
3
0
24
0.98
37996219--37996245
12
2.2
12
100
0
54
22
11
0
66
1.22
37996556--37996599
22
2.0
22
95
0
79
34
4
36
25
1.76
37998227--37998270
22
2.0
22
95
0
79
34
4
36
25
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38003389--38003435
20
2.3
20
81
0
58
23
12
34
29
1.92
38005272--38005302
12
2.6
12
100
0
62
25
16
12
45
1.83
38005350--38005406
5
11.0
5
78
17
55
3
17
0
78
0.88
38007593--38007638
25
1.9
25
86
8
69
19
15
13
52
1.75
38012997--38013054
23
2.5
23
94
2
98
17
8
1
72
1.18
38012997--38013054
11
5.0
11
86
12
80
17
8
1
72
1.18
38021262--38021326
20
3.2
20
78
8
69
38
15
21
24
1.92
38021253--38021326
30
2.5
31
82
12
93
39
17
20
22
1.92
38029020--38029072
23
2.4
22
76
20
56
9
18
1
69
1.25
38032176--38032240
20
3.3
19
73
16
51
38
16
21
23
1.93
38034073--38034170
30
3.3
30
72
4
90
27
26
16
29
1.97
38036896--38036922
6
4.5
6
100
0
54
14
0
33
51
1.43
38039313--38039356
22
2.0
22
95
0
79
25
36
4
34
1.76
38039672--38039706
11
2.9
12
87
12
54
77
0
2
20
0.90
38040473--38040506
15
2.3
15
89
0
50
35
29
32
2
1.73
38044197--38044240
22
2.0
22
95
0
79
25
36
4
34
1.76
38044583--38044679
30
3.2
30
77
2
106
28
26
15
28
1.96
38046778--38046883
42
2.5
42
98
1
203
33
12
14
40
1.83
38046866--38046910
14
3.3
14
84
6
65
37
0
13
48
1.42
38051309--38051382
21
3.6
21
67
22
50
70
2
20
6
1.23
38054379--38054432
20
2.7
20
82
0
63
24
20
18
37
1.94
38054379--38054452
30
2.5
30
86
8
98
21
20
18
39
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38054379--38054443
20
3.2
20
71
16
53
23
21
16
38
1.93
38055944--38055974
10
3.1
10
95
0
53
83
0
3
12
0.75
38056051--38056111
19
3.1
19
81
9
77
81
1
11
4
0.90
38056057--38056091
9
3.8
9
88
3
52
82
0
11
5
0.82
38056056--38056102
10
4.8
10
84
10
62
82
2
10
4
0.88
38056056--38056112
22
2.8
19
75
14
60
78
1
14
5
0.99
38057077--38057194
12
9.8
12
68
18
50
70
3
18
7
1.26
38057094--38057197
18
5.6
18
75
5
82
71
3
18
6
1.24
38057090--38057197
6
17.7
6
70
6
74
71
3
18
6
1.23
38057158--38057195
13
2.8
13
82
17
51
73
0
18
7
1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325