genome.fa.s3.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  126  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40429483--40429665	48	4.0	46	73	13	162	26	21	25	26	2.00
40430990--40431076	18	4.8	18	100	0	174	16	28	39	16	1.89
40431712--40431873	29	5.5	29	87	4	209	25	27	11	36	1.90
40431712--40431873	59	2.8	58	86	3	225	25	27	11	36	1.90
40432043--40432086	23	2.0	22	86	13	63	43	11	6	38	1.67
40438908--40439125	40	5.5	40	87	3	282	23	23	27	25	2.00
40446983--40447200	40	5.5	40	83	4	230	23	22	27	26	1.99
40449762--40449807	17	2.6	17	93	3	74	13	30	36	19	1.90
40449970--40450092	54	2.3	54	81	7	142	39	19	8	32	1.83
40449975--40450092	27	4.4	27	82	5	114	39	19	9	31	1.83
40450070--40450246	27	6.9	27	78	12	174	29	22	7	40	1.81
40450070--40450247	54	3.4	54	77	12	192	29	22	7	40	1.81
40450149--40450191	19	2.3	19	95	0	77	27	20	9	41	1.83
40450122--40450218	46	2.1	46	88	0	140	27	21	9	41	1.84
40450095--40450236	73	1.9	73	87	2	205	26	22	8	42	1.82
40450070--40450256	100	1.9	100	84	2	250	30	22	6	39	1.81
40450167--40450363	54	3.6	54	82	4	173	36	20	8	35	1.82
40450224--40450476	81	3.1	80	73	6	215	38	20	9	31	1.85
40450197--40450476	27	10.3	27	79	6	154	37	20	9	32	1.84
40450498--40450598	27	3.7	27	89	5	134	31	22	24	20	1.98
40451401--40451471	37	1.9	37	94	0	124	33	19	25	21	1.97
40451438--40451561	26	4.8	26	90	1	196	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40451706--40451794	42	2.1	42	85	0	115	33	13	16	35	1.88
40451821--40451899	31	2.5	31	91	0	131	29	13	26	30	1.94
40457692--40457831	29	4.8	29	79	8	151	26	23	12	37	1.90
40458361--40458413	26	2.0	26	100	0	106	58	15	7	18	1.60
40460626--40460653	14	2.0	14	100	0	56	71	14	7	7	1.29
40461264--40461289	13	2.0	13	100	0	52	30	0	15	53	1.42
40462446--40462533	45	2.0	44	95	2	158	23	13	26	36	1.92
40470630--40470688	18	3.4	17	79	11	66	40	15	5	38	1.69
40474436--40474512	23	3.4	23	78	3	102	36	22	27	14	1.92
40475841--40475904	31	2.1	31	87	0	92	23	23	14	39	1.91
40476098--40476263	24	7.0	24	84	4	212	27	20	21	30	1.98
40476098--40476263	71	2.3	71	89	3	244	27	20	21	30	1.98
40476098--40476263	47	3.5	48	85	4	212	27	20	21	30	1.98
40476314--40476352	20	2.0	20	100	0	78	30	20	12	35	1.90
40476315--40476359	20	2.2	20	92	0	72	31	22	13	33	1.92
40476396--40476443	25	1.9	25	91	0	78	25	14	25	35	1.94
40477600--40477702	27	3.8	27	78	7	100	24	21	19	34	1.96
40477809--40477934	27	4.7	27	86	0	171	31	7	19	41	1.80
40477809--40477948	54	2.6	54	87	0	199	32	7	20	39	1.81
40477727--40477948	27	8.1	27	78	5	162	32	8	18	40	1.81
40477925--40478050	27	5.0	27	76	16	117	37	7	25	29	1.84
40477954--40477996	19	2.3	19	91	0	68	37	6	25	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477934--40478023	46	2.0	46	90	0	144	37	7	26	27	1.84
40477962--40478003	19	2.2	19	86	0	57	40	7	28	23	1.81
40478016--40478088	38	1.9	38	85	0	101	39	6	28	24	1.81
40477927--40478110	73	2.7	71	79	10	179	37	7	26	28	1.84
40478046--40478113	27	2.5	27	87	0	100	39	5	26	27	1.79
40477981--40478110	65	2.0	65	84	1	172	37	8	27	26	1.85
40478119--40478207	27	3.3	27	81	6	110	32	10	15	41	1.81
40485963--40486003	18	2.3	18	82	0	55	39	17	4	39	1.71
40485974--40486012	18	2.2	18	85	0	51	38	17	7	35	1.79
40485974--40486024	25	2.0	26	92	7	86	41	15	7	35	1.76
40486205--40486285	23	3.6	23	78	8	85	37	18	25	18	1.94
40491724--40491762	19	2.1	19	100	0	78	53	15	0	30	1.42
40493384--40493512	48	2.7	49	81	8	156	20	20	27	30	1.98
40500269--40500293	13	1.9	13	100	0	50	40	24	4	32	1.73
40508763--40508868	42	2.5	42	74	10	99	26	25	20	27	1.99
40510081--40510184	32	3.2	32	97	0	190	38	18	8	34	1.81
40510487--40510621	25	5.4	26	72	12	104	35	20	25	17	1.95
40512971--40513045	26	2.9	25	84	4	87	38	22	20	18	1.93
40512925--40513052	52	2.6	48	78	10	123	37	20	22	19	1.94
40519979--40520022	23	1.9	23	86	9	63	47	13	4	34	1.63
40520712--40520771	26	2.3	26	82	0	75	36	23	21	18	1.95
40520727--40520786	26	2.3	26	85	5	77	31	23	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40521435--40521477	19	2.3	19	84	8	52	32	11	0	55	1.36
40524122--40524150	7	4.1	7	100	0	58	27	27	0	44	1.54
40538183--40538268	26	3.4	25	84	9	120	30	18	23	27	1.98
40538477--40538540	31	2.1	31	81	0	74	40	10	26	21	1.86
40544473--40544536	32	2.0	33	87	6	96	20	25	26	28	1.99
40548162--40548246	39	2.2	40	86	2	118	27	28	20	24	1.99
40548265--40548351	39	2.2	39	91	2	138	21	28	24	25	1.99
40548162--40548346	100	1.9	100	84	2	255	25	28	21	24	1.99
40548262--40548351	40	2.3	40	90	1	146	23	27	23	25	2.00
40548336--40548413	40	1.9	41	82	10	97	26	28	20	24	1.99
40551639--40551818	39	4.6	40	88	3	242	26	27	21	24	1.99
40551639--40551794	79	2.0	78	89	1	240	26	28	19	25	1.99
40551642--40551818	79	2.3	78	86	3	230	25	28	22	24	1.99
40551644--40551844	39	5.2	39	87	4	165	25	27	21	25	1.99
40551642--40551844	79	2.6	79	83	4	216	25	28	21	25	1.99
40551637--40551896	118	2.2	117	78	8	269	26	27	20	25	1.99
40551830--40551905	40	1.9	40	81	10	93	27	27	19	25	1.99
40558936--40559073	39	3.5	39	88	2	177	24	27	23	24	2.00
40558959--40559090	40	3.3	40	90	1	185	25	25	21	27	2.00
40564279--40564500	40	5.6	40	89	1	331	22	21	27	28	1.99
40566477--40566542	21	3.0	22	86	4	80	30	4	30	34	1.78
40579975--40580081	43	2.5	42	76	5	117	26	19	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40581628--40581697	25	2.8	25	93	0	113	27	22	24	25	2.00
40581957--40582234	27	10.3	27	81	1	288	30	8	19	40	1.83
40581957--40582234	54	5.1	54	85	2	362	30	8	19	40	1.83
40582227--40582633	27	15.1	27	89	2	541	40	8	22	28	1.83
40584115--40584193	28	2.8	28	84	0	95	35	11	25	27	1.90
40585803--40585955	80	1.9	81	90	1	245	37	6	22	33	1.80
40585803--40585947	27	5.4	27	89	1	211	39	6	20	33	1.79
40588413--40588473	27	2.3	27	91	0	104	26	19	18	36	1.94
40588458--40588696	27	8.9	27	83	2	239	29	8	21	40	1.82
40588428--40588718	81	3.6	81	77	6	243	28	9	20	40	1.85
40588428--40588691	54	4.9	54	78	6	241	28	10	20	40	1.85
40588454--40588732	27	10.3	26	79	7	209	30	8	21	39	1.83
40588711--40589190	27	17.8	27	88	0	620	39	8	22	29	1.83
40591388--40591464	25	3.1	24	76	9	75	25	18	22	33	1.96
40591669--40591722	27	2.0	27	88	0	81	22	20	20	37	1.95
40591725--40591961	54	4.4	54	85	3	289	30	7	21	40	1.80
40591711--40591952	81	3.0	81	83	3	299	30	7	20	41	1.79
40591725--40592353	27	23.3	27	86	1	258	35	7	21	34	1.83
40591940--40592339	54	7.4	54	91	0	575	39	8	22	30	1.83
40591940--40592339	81	4.9	81	92	0	584	39	8	22	30	1.83
40594477--40594611	70	1.9	69	89	1	207	31	11	22	35	1.89
40608926--40609163	49	4.8	49	84	5	282	26	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40608926--40609158	99	2.3	101	83	5	296	25	18	27	28	1.98
40614064--40614138	38	2.0	38	84	5	98	25	18	22	33	1.97
40614038--40614190	43	3.7	42	69	19	113	27	19	22	30	1.98
40624541--40624685	40	3.6	41	90	5	226	25	28	22	24	1.99
40624504--40624680	80	2.2	80	86	5	234	24	28	22	24	1.99
40628160--40628229	27	2.6	27	95	2	113	31	28	12	27	1.93
40628160--40628257	28	3.5	28	90	2	135	31	28	13	26	1.94
40647131--40647308	40	4.5	40	92	2	288	24	28	22	24	1.99
40648577--40648758	37	4.9	37	95	0	319	25	31	18	24	1.98
40648967--40649600	47	13.1	47	87	6	845	26	30	12	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325