genome.fa.s3.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Length:  105315579

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  98  of  325  ( 38900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31600168--31600246	37	2.1	37	88	4	115	25	30	18	25	1.98
31600364--31600743	47	8.1	47	94	0	634	28	30	8	32	1.88
31614373--31614546	18	9.8	18	74	7	133	37	19	16	26	1.93
31614369--31614522	53	2.9	52	78	8	177	36	18	17	27	1.94
31614373--31614509	35	3.9	35	71	15	104	36	18	17	27	1.94
31616760--31616931	93	1.8	93	96	0	317	27	29	21	20	1.98
31616753--31616928	46	3.8	46	79	12	216	28	29	21	20	1.98
31624296--31624468	93	1.8	93	91	3	285	28	30	20	20	1.98
31626183--31626257	25	3.0	25	86	0	105	30	18	21	29	1.97
31629103--31629144	21	2.0	21	86	9	59	57	2	4	35	1.33
31629151--31629227	28	2.6	29	80	15	79	63	6	2	27	1.32
31629666--31629708	7	5.7	7	79	15	50	11	4	0	83	0.78
31629666--31629708	15	2.8	15	89	10	61	11	4	0	83	0.78
31630413--31630497	41	2.1	41	91	4	136	27	24	18	29	1.98
31630541--31630652	42	2.6	44	76	7	122	19	24	21	34	1.96
31631122--31631205	42	2.0	42	90	0	132	25	19	19	36	1.94
31639200--31639229	9	3.4	9	95	4	53	33	13	30	23	1.93
31643114--31643138	12	2.1	12	100	0	50	52	0	16	32	1.44
31643514--31643564	23	2.1	25	85	10	70	66	5	3	23	1.30
31644934--31644978	22	2.0	22	95	0	81	20	8	28	42	1.82
31651843--31651873	15	2.1	14	94	5	53	35	3	6	54	1.42
31659319--31659388	21	3.5	20	73	15	63	35	1	5	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31664688--31664728	21	2.0	21	95	0	73	70	12	14	2	1.26
31667017--31667104	43	2.0	44	93	2	151	46	6	18	28	1.74
31667998--31668382	197	2.0	197	91	2	630	29	17	16	37	1.91
31678042--31678214	46	3.8	44	73	11	125	28	20	27	23	1.99
31678145--31678263	46	2.6	43	80	7	112	29	21	26	22	1.99
31692574--31692614	22	1.9	22	90	5	66	17	26	43	12	1.84
31703116--31703259	57	2.5	58	84	6	186	29	20	18	31	1.96
31725791--31725828	18	2.1	18	100	0	76	5	42	5	47	1.48
31726057--31726081	11	2.3	11	100	0	50	72	0	0	28	0.86
31726351--31726409	31	1.9	30	83	10	75	27	22	5	45	1.73
31730397--31730435	18	2.2	18	86	9	53	61	0	7	30	1.24
31739861--31740035	6	28.8	6	72	17	139	50	14	15	20	1.78
31739840--31740010	30	5.9	30	78	13	169	50	14	15	19	1.78
31739861--31740035	55	3.3	49	80	8	136	50	14	15	20	1.78
31739984--31740029	19	2.5	18	89	3	65	50	13	13	23	1.76
31740153--31740218	27	2.5	26	85	7	87	37	22	21	18	1.94
31740391--31740449	22	2.7	22	81	0	64	32	18	25	23	1.97
31740537--31740619	27	3.1	26	87	5	112	37	21	21	19	1.94
31740818--31741013	27	7.3	27	82	2	216	25	18	18	37	1.94
31741018--31741505	27	18.1	27	84	4	574	42	10	20	27	1.84
31743522--31743659	6	22.8	6	75	17	126	50	14	15	18	1.78
31743522--31743684	73	2.2	73	90	4	249	50	14	15	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31743524--31743684	30	5.3	30	75	13	96	50	14	15	19	1.77
31743594--31743684	12	7.5	12	73	16	71	51	15	15	17	1.76
31743802--31743867	27	2.5	26	87	7	96	39	22	21	16	1.92
31743826--31743883	27	2.1	27	81	6	64	37	27	18	15	1.92
31744040--31744098	22	2.7	22	81	0	64	32	22	25	20	1.98
31744183--31744266	27	3.2	26	88	5	96	38	21	21	19	1.94
31744292--31744321	15	1.9	16	93	6	53	33	16	20	30	1.94
31744462--31744656	27	7.3	27	77	9	152	26	18	18	35	1.94
31744661--31745187	27	19.9	27	81	9	568	41	9	21	27	1.83
31748005--31748135	39	3.3	40	87	4	160	26	27	21	24	1.99
31748005--31748188	40	4.7	40	82	7	207	26	27	22	24	2.00
31748032--31748185	79	1.9	80	83	6	197	25	27	20	25	1.99
31756157--31756333	38	4.7	39	75	12	122	27	23	23	25	2.00
31762882--31762950	27	2.6	27	95	0	120	33	20	20	26	1.97
31762960--31763275	27	11.7	27	78	7	216	42	21	7	28	1.81
31763516--31763638	41	3.0	41	89	0	201	21	21	29	27	1.99
31765215--31765282	29	2.3	29	85	5	93	27	30	13	27	1.94
31765384--31765462	29	2.7	30	82	13	110	29	30	15	25	1.96
31767143--31767207	22	3.0	22	75	8	60	21	24	21	32	1.98
31769399--31769509	43	2.6	43	89	0	177	31	35	23	9	1.88
31769507--31769703	38	5.1	38	87	2	286	30	25	21	21	1.98
31769507--31769703	78	2.6	76	86	3	295	30	25	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772308--31772429	22	5.3	22	62	21	61	33	11	29	25	1.91
31772161--31772457	47	6.3	47	93	1	445	31	9	31	27	1.89
31778292--31778375	44	1.9	44	87	0	123	28	27	21	22	1.99
31778706--31778859	43	3.6	43	95	0	281	31	34	24	9	1.88
31778852--31779053	38	5.3	38	87	2	287	30	26	21	21	1.98
31778852--31779053	78	2.6	76	85	3	296	30	26	21	21	1.98
31788557--31788647	26	3.6	24	73	15	69	43	4	1	50	1.29
31788639--31788779	23	6.4	22	68	19	62	32	5	2	59	1.33
31788685--31788729	18	2.5	17	86	10	63	31	2	4	62	1.27
31800932--31801860	206	4.5	206	91	1	1403	31	17	22	28	1.97
31800932--31801860	413	2.2	412	89	2	1441	31	17	22	28	1.97
31803486--31803554	23	2.8	24	73	8	59	49	4	1	44	1.31
31803566--31803610	20	2.2	20	80	4	54	37	4	0	57	1.19
31805062--31805123	23	2.7	21	77	18	61	54	1	9	33	1.43
31805129--31805165	14	2.4	16	86	8	51	64	0	5	29	1.15
31805219--31805313	37	2.7	33	78	18	93	63	1	3	32	1.17
31805261--31805323	15	4.3	14	79	20	67	63	0	3	33	1.10
31805209--31805312	28	3.8	28	70	21	85	61	0	2	34	1.17
31805443--31805484	20	2.2	19	87	12	59	64	0	4	30	1.14
31807199--31807715	206	2.5	203	87	2	757	29	23	18	29	1.97
31807775--31808055	132	2.1	132	89	2	422	28	24	17	29	1.97
31808859--31808978	46	2.6	46	86	2	161	17	24	14	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31809739--31809817	37	2.1	37	90	0	122	25	31	18	24	1.98
31809936--31810196	47	5.6	47	93	0	423	29	29	8	32	1.87
31812637--31812787	46	3.5	46	83	14	228	24	25	15	34	1.94
31812701--31812776	38	2.0	38	100	0	152	23	26	18	31	1.97
31814158--31814271	15	7.7	15	84	3	135	47	37	0	14	1.50
31814158--31814266	7	14.9	7	84	6	128	45	39	0	14	1.45
31823571--31823600	14	2.1	14	93	0	51	46	3	6	43	1.46
31827457--31827518	23	2.7	21	77	18	61	54	1	9	33	1.43
31827618--31827711	36	2.7	33	78	15	91	62	1	3	32	1.18
31827659--31827721	15	4.3	14	79	20	67	63	0	3	33	1.10
31827841--31827882	20	2.2	19	87	12	59	64	0	4	30	1.14
31828603--31828827	40	5.7	40	85	5	287	24	22	27	25	2.00
31828603--31828860	119	2.2	119	81	6	283	25	21	27	25	2.00
31832485--31832640	27	5.7	27	78	6	145	27	28	16	28	1.97
31832490--31832641	54	2.8	55	80	4	182	26	27	16	28	1.97
31838577--31838696	56	2.1	56	98	0	231	45	9	23	22	1.81
31839821--31840042	118	1.9	119	84	6	299	24	22	27	25	2.00
31839821--31840044	40	5.7	40	85	6	287	24	22	27	25	2.00
31846924--31846955	12	2.6	13	85	14	50	46	0	0	53	1.00
31850720--31850750	15	2.1	15	100	0	62	35	19	6	38	1.77
31852163--31852325	71	2.4	68	82	8	190	52	12	4	30	1.59
31852739--31852846	26	4.2	26	91	0	180	32	8	24	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31855885--31856010	5	25.0	5	73	10	62	66	0	1	31	1.01
31855862--31856036	53	3.4	52	79	11	182	66	1	1	31	1.07
31855873--31856037	33	4.8	34	73	18	130	66	0	1	31	1.04
31855891--31856030	77	1.9	74	86	10	203	66	0	1	31	1.06
31855873--31856036	3	55.0	3	72	24	109	67	0	1	31	1.03
31856076--31856136	29	2.2	27	91	5	95	68	0	0	31	0.89
31856294--31856351	30	1.9	30	82	6	73	56	6	13	22	1.61
31857550--31857676	45	2.8	45	70	4	121	29	29	12	28	1.93
31857550--31857717	90	1.9	90	86	5	241	30	25	13	30	1.94
31861171--31861233	33	1.9	32	81	9	74	47	12	6	33	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325