genome.fa.s13.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  101  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32664297--32664329	14	2.4	14	90	10	50	39	0	0	60	0.97
32666947--32666986	20	2.0	20	95	0	71	32	20	27	20	1.97
32668146--32668221	38	2.0	38	97	0	143	40	13	14	31	1.84
32670596--32670801	47	4.6	47	75	15	202	31	22	15	31	1.95
32670596--32670759	85	1.9	85	94	0	292	32	22	15	29	1.95
32670596--32670838	132	1.8	132	84	3	337	31	23	14	30	1.94
32673574--32673630	24	2.3	25	82	8	64	10	21	21	47	1.80
32686385--32686410	12	2.2	12	100	0	52	30	7	15	46	1.74
32702271--32702329	19	3.3	19	65	26	56	42	10	3	44	1.55
32702269--32702341	34	2.2	33	97	2	137	43	10	2	42	1.54
32707440--32707477	19	2.0	20	85	15	53	39	23	0	36	1.55
32707705--32707875	93	1.8	93	91	0	279	29	28	20	22	1.98
32707700--32707872	46	3.7	46	77	10	190	30	27	20	22	1.98
32715215--32715338	47	2.7	47	81	9	148	31	26	19	22	1.98
32715758--32715813	29	1.9	29	85	0	76	33	23	5	37	1.78
32735981--32736059	39	2.0	40	85	12	108	24	18	31	25	1.98
32742357--32742492	41	3.3	41	79	10	136	24	27	21	26	1.99
32751260--32751437	27	6.6	27	84	3	205	29	28	15	26	1.96
32751281--32751436	82	1.9	81	88	3	233	29	28	15	26	1.96
32756611--32756651	21	2.0	21	90	0	64	31	14	29	24	1.95
32757955--32758046	42	2.2	42	90	0	139	35	20	14	29	1.92
32759019--32759075	27	2.1	27	90	6	89	21	26	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32759137--32759188	27	1.9	27	92	7	88	34	13	11	40	1.81
32759227--32759307	27	3.0	27	83	0	108	33	7	18	40	1.78
32760824--32761055	40	5.8	40	84	3	288	26	28	21	24	1.99
32760824--32761055	80	2.9	80	87	1	331	26	28	21	24	1.99
32760795--32761054	120	2.2	120	90	2	407	27	28	20	23	1.99
32764247--32764280	16	2.1	17	88	5	52	29	14	0	55	1.40
32765065--32765196	40	3.3	40	88	3	169	25	27	21	25	2.00
32765065--32765249	79	2.3	82	82	7	220	24	27	22	25	2.00
32774339--32774423	29	3.0	29	91	3	129	25	31	17	24	1.97
32778301--32778358	26	2.2	26	81	6	64	18	13	34	32	1.91
32778322--32778374	25	2.1	26	89	3	81	24	13	30	32	1.93
32779163--32779217	14	3.9	14	90	0	83	40	5	32	21	1.76
32781936--32782147	46	4.5	46	78	9	182	24	26	19	29	1.99
32781935--32782147	94	2.3	92	84	4	266	24	26	19	29	1.99
32783887--32783979	46	2.0	46	87	4	134	27	23	21	26	1.99
32785422--32785553	40	3.3	39	93	3	219	27	28	21	23	1.99
32793336--32793559	40	5.7	40	86	6	262	26	26	21	25	1.99
32802866--32802918	26	2.0	26	100	0	106	30	0	37	32	1.58
32806999--32807032	15	2.3	15	89	0	50	61	2	8	26	1.40
32807348--32807378	16	1.9	16	93	0	53	45	0	0	54	0.99
32812063--32812240	96	1.9	96	84	7	245	9	27	17	45	1.79
32832184--32832243	24	2.5	22	75	15	57	40	1	1	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32832618--32832670	20	2.7	20	79	2	54	18	11	18	50	1.76
32833694--32833792	50	1.9	52	87	4	148	33	12	13	41	1.81
32833693--32833812	50	2.4	50	81	8	145	32	13	13	40	1.83
32839052--32839100	16	3.5	14	83	13	57	57	14	0	28	1.38
32840288--32840333	10	4.6	10	84	10	51	23	6	2	67	1.25
32841040--32841073	18	1.9	18	94	5	61	26	5	5	61	1.42
32848190--32848226	5	7.2	5	87	6	56	75	0	24	0	0.80
32848163--32848226	15	4.0	16	72	13	60	67	0	29	3	1.06
32850452--32850527	7	10.4	7	74	16	57	19	2	1	76	0.98
32850452--32850519	20	3.4	21	75	22	65	20	2	0	76	0.92
32852437--32852621	40	4.7	40	80	7	200	24	22	27	25	2.00
32852437--32852619	79	2.3	81	83	7	232	25	22	26	25	2.00
32852438--32852644	79	2.6	79	77	12	219	26	22	26	25	2.00
32857269--32857498	50	4.6	49	80	7	232	30	26	17	25	1.97
32863576--32863716	69	2.0	69	100	0	282	43	11	13	31	1.79
32864521--32864647	49	2.6	49	86	6	159	29	31	15	22	1.95
32864521--32864750	50	4.6	50	77	7	216	30	25	17	26	1.98
32867398--32867447	10	5.0	10	76	13	50	20	8	2	70	1.23
32877513--32877687	46	3.8	46	75	10	176	30	28	19	21	1.98
32879164--32879412	50	4.8	50	85	4	284	20	29	24	26	1.99
32879163--32879412	100	2.4	104	88	6	357	20	29	24	26	1.99
32879507--32879538	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32879750--32879807	30	1.9	30	89	0	89	31	24	3	41	1.71
32884151--32884208	29	2.0	29	96	0	107	39	0	25	34	1.56
32895541--32895621	41	2.0	41	92	0	135	44	13	6	35	1.69
32895657--32895716	19	3.2	19	97	0	111	43	11	5	40	1.63
32900216--32900312	42	2.3	41	84	8	133	48	14	4	32	1.63
32907387--32907439	25	2.2	25	86	3	72	24	15	26	33	1.95
32909411--32909471	10	6.1	10	74	12	54	32	13	24	29	1.93
32909412--32909472	20	3.0	20	83	9	79	32	13	26	27	1.93
32910216--32910342	43	3.0	43	80	5	159	24	14	25	34	1.94
32915698--32915760	30	2.1	30	85	5	83	28	4	6	60	1.42
32919990--32920176	99	1.9	100	93	1	322	29	25	19	26	1.98
32919985--32920178	49	3.9	49	77	4	183	28	25	18	26	1.98
32919998--32920171	49	3.5	49	77	4	206	29	25	17	27	1.98
32921700--32921740	22	1.9	22	95	5	75	17	29	43	9	1.80
32924641--32924843	43	4.8	43	87	1	275	23	19	29	28	1.98
32925408--32925440	16	1.9	18	88	11	52	18	12	18	51	1.76
32933158--32933311	28	5.5	28	94	1	247	33	27	12	27	1.92
32940940--32941149	28	7.5	28	92	1	332	33	26	11	28	1.92
32942928--32942966	20	1.9	20	89	5	60	61	2	0	35	1.10
32953534--32953740	43	4.8	43	91	0	326	25	20	28	25	1.99
32953672--32953822	41	3.7	39	76	7	115	26	19	27	25	1.99
32954304--32954336	16	1.9	18	88	11	52	18	12	18	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32956983--32957009	4	6.8	4	100	0	54	22	0	0	77	0.76
32963327--32963353	4	6.8	4	100	0	54	22	0	0	77	0.76
32966280--32966338	26	2.3	26	96	0	109	13	38	16	30	1.88
32967175--32967216	21	1.9	23	90	9	70	26	7	19	47	1.74
32967266--32967362	40	2.4	41	81	3	117	35	15	15	34	1.89
32971553--32971583	16	1.9	16	93	0	53	6	29	45	19	1.75
32971737--32971817	41	2.0	41	92	0	135	24	24	28	22	1.99
32975416--32975475	29	2.1	29	90	0	93	41	28	0	30	1.56
32975422--32975469	15	3.3	15	73	5	53	43	25	0	31	1.55
32978041--32978363	49	6.8	49	92	3	493	32	8	30	29	1.86
32978482--32978560	37	2.1	37	90	0	122	24	18	31	25	1.98
32978949--32978979	9	3.4	9	95	0	53	3	25	12	58	1.50
32984794--32984877	38	2.2	38	89	0	123	21	22	26	29	1.99
32984870--32984981	43	2.6	43	92	0	188	11	25	33	29	1.91
32990072--32990183	43	2.6	43	95	0	206	9	25	34	29	1.88
32993400--32993457	10	5.7	10	76	11	64	29	27	13	29	1.94
32993400--32993460	20	3.0	20	83	9	79	27	26	13	32	1.93
32994807--32994894	13	6.6	13	72	20	67	73	5	7	12	1.22
32994857--32994928	27	2.5	29	86	8	103	68	6	13	11	1.39
32994858--32994908	15	3.6	15	80	19	65	72	7	13	5	1.26
32995825--32995863	18	2.3	18	86	8	55	64	0	20	15	1.30
32999349--32999406	10	5.7	10	76	11	64	29	27	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32999349--32999409	20	3.0	20	83	9	79	27	26	13	32	1.93
33002096--33002207	48	2.4	47	83	3	136	30	22	15	32	1.94
33002096--33002215	46	2.6	47	82	2	143	28	22	15	34	1.94
33003794--33003832	20	2.1	19	90	9	62	5	28	15	51	1.64
33005782--33005844	32	2.0	32	96	0	117	28	28	19	23	1.98
33020513--33020598	40	2.2	39	87	2	118	24	15	29	31	1.95
33024850--33024892	2	21.5	2	100	0	86	51	0	48	0	1.00
33028809--33028991	39	4.7	39	93	0	303	29	19	26	24	1.98
33032887--33032918	15	2.1	15	94	0	55	53	25	0	21	1.46
33040180--33040235	22	2.5	22	94	0	94	44	26	0	28	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332