genome.fa.s13.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  150  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49177118--49177166	21	2.2	22	82	7	55	71	2	2	24	1.07
49184892--49185024	51	2.6	51	78	0	149	41	12	6	39	1.69
49187723--49187847	51	2.5	51	81	0	142	40	12	6	40	1.68
49188705--49188740	13	2.8	13	95	0	63	41	0	5	52	1.24
49191026--49191072	17	2.9	17	78	12	55	48	0	17	34	1.47
49192839--49192870	15	2.1	16	94	5	57	43	0	15	40	1.47
49192856--49192895	20	2.0	20	85	9	55	42	2	12	42	1.56
49193230--49193325	18	5.3	18	83	5	122	40	11	12	35	1.79
49197626--49197670	20	2.3	20	84	3	56	51	4	8	35	1.54
49199559--49199699	27	5.2	27	85	11	191	34	22	24	18	1.96
49199559--49199699	54	2.6	54	95	2	248	34	22	24	18	1.96
49201912--49201972	16	3.6	16	78	21	63	42	3	16	37	1.64
49201912--49201961	15	3.0	15	83	16	55	42	2	16	40	1.59
49201931--49201968	20	1.9	20	89	10	60	36	5	15	42	1.70
49202306--49202398	18	5.2	18	83	5	107	39	10	13	35	1.80
49214258--49214286	15	2.0	15	93	6	51	6	13	20	58	1.58
49216389--49216443	24	2.3	24	83	0	74	49	23	1	25	1.60
49219733--49219791	15	3.9	15	76	8	57	55	15	13	15	1.69
49220810--49220921	27	4.2	26	81	12	127	38	21	24	16	1.93
49220810--49220921	54	2.1	54	88	6	165	38	21	24	16	1.93
49222302--49222358	25	2.3	24	93	6	96	19	38	5	36	1.74
49222302--49222365	25	2.6	25	90	5	85	17	42	4	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49222672--49222714	18	2.4	18	88	0	59	58	18	9	13	1.62
49228635--49228743	27	4.0	27	88	3	139	39	22	22	16	1.92
49230134--49230190	25	2.3	24	93	6	96	19	38	5	36	1.74
49230134--49230197	25	2.6	25	90	5	85	17	42	4	35	1.70
49254544--49254569	11	2.4	11	100	0	52	42	11	26	19	1.85
49256125--49256249	28	4.6	27	93	2	187	31	28	13	26	1.94
49256125--49256249	55	2.3	56	90	2	173	31	28	13	26	1.94
49257856--49257959	42	2.4	43	82	6	131	25	18	25	31	1.97
49257821--49257977	43	3.7	43	75	9	151	23	18	27	30	1.98
49266444--49266611	40	4.2	40	81	4	97	25	26	23	24	2.00
49266467--49266611	40	3.6	40	84	4	184	23	25	24	26	2.00
49276430--49276540	40	2.8	40	83	1	98	25	28	23	22	1.99
49276453--49276596	40	3.6	40	80	6	166	23	25	25	25	2.00
49286917--49286968	21	2.2	25	83	12	67	32	1	23	42	1.65
49287316--49287358	13	3.5	12	90	6	52	44	11	30	13	1.80
49287325--49287358	13	2.6	13	100	0	68	41	14	29	14	1.86
49294239--49294360	46	2.6	46	87	3	156	30	18	28	22	1.97
49303397--49303449	23	2.3	21	76	17	52	22	3	37	35	1.72
49304468--49304501	18	1.9	17	88	5	50	5	23	50	20	1.70
49304611--49304690	27	3.0	27	83	0	106	25	15	20	40	1.90
49307396--49307440	22	2.0	22	95	0	81	24	6	28	40	1.80
49308583--49308630	23	2.1	23	92	0	78	16	27	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49313712--49313736	9	2.8	9	100	0	50	64	0	12	24	1.27
49314204--49314385	35	5.1	35	78	2	130	41	16	10	31	1.82
49317566--49317607	20	2.2	20	87	12	61	57	4	21	16	1.58
49324275--49324325	17	2.8	18	82	11	59	47	3	3	45	1.40
49328004--49328145	40	3.6	40	87	2	207	23	22	26	27	1.99
49333204--49333331	34	3.8	34	85	0	166	28	6	24	41	1.79
49344495--49344533	17	2.3	17	90	0	60	28	17	28	25	1.98
49353149--49353201	24	2.2	25	82	3	63	30	9	11	49	1.70
49354663--49354827	89	1.9	89	97	0	312	21	27	24	26	1.99
49356745--49357011	137	1.9	138	81	0	320	33	25	20	20	1.97
49363478--49363622	40	3.6	40	85	4	193	25	24	26	23	2.00
49371506--49371638	40	3.3	39	85	5	149	24	24	25	25	2.00
49371506--49371611	40	2.6	40	86	5	151	24	25	25	24	2.00
49371504--49371656	81	1.9	80	81	9	186	24	24	25	24	2.00
49371504--49371685	81	2.3	81	80	7	185	25	24	25	24	2.00
49377667--49377717	23	2.2	23	85	0	66	25	23	13	37	1.92
49384051--49384299	41	6.1	41	82	3	281	34	24	20	20	1.96
49384312--49384427	53	2.2	54	84	1	144	47	31	0	20	1.56
49384353--49384401	17	2.9	17	75	19	50	53	32	0	14	1.41
49387911--49387959	25	2.0	25	92	8	82	77	0	20	2	0.87
49394684--49394796	43	2.7	42	77	4	120	32	31	15	20	1.93
49397850--49397895	15	3.1	15	93	0	74	56	15	13	15	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49399676--49399723	22	2.2	22	92	0	78	29	33	29	8	1.86
49401688--49401778	43	2.1	43	87	2	130	31	29	16	21	1.95
49405139--49405173	13	2.7	13	90	0	52	34	11	14	40	1.82
49406234--49406303	24	3.0	24	82	2	88	40	15	21	22	1.91
49406340--49406538	51	3.9	51	94	0	344	32	13	24	29	1.93
49410476--49410695	46	4.7	48	76	11	192	27	19	30	23	1.98
49411734--49411792	21	2.9	21	87	2	84	13	32	28	25	1.94
49413736--49413905	92	1.8	93	91	1	279	27	28	21	22	1.99
49413728--49413902	46	3.8	46	76	14	189	28	28	20	22	1.98
49413733--49413921	46	4.1	46	68	22	119	28	28	20	22	1.99
49416261--49416337	15	5.2	15	80	9	79	57	14	16	11	1.66
49416251--49416337	29	3.0	29	81	9	106	57	14	17	10	1.64
49419246--49419416	93	1.8	93	91	0	279	28	29	20	21	1.98
49419238--49419413	46	3.8	46	77	12	189	29	28	19	21	1.98
49421899--49421996	50	2.0	50	95	0	178	48	13	9	28	1.72
49425012--49425127	31	3.8	31	90	1	180	25	24	16	34	1.95
49425332--49425441	26	4.4	25	84	10	111	25	21	23	29	1.99
49425345--49425440	26	3.8	25	90	2	131	26	21	25	27	2.00
49427652--49427714	27	2.3	27	94	0	108	22	19	19	39	1.92
49427704--49427829	27	4.7	27	76	5	85	30	8	23	37	1.85
49427813--49428050	27	8.8	27	88	0	323	31	8	19	39	1.82
49427752--49428050	81	3.7	80	85	3	348	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49433686--49433737	27	2.0	26	84	3	68	34	21	26	17	1.95
49434408--49434470	27	2.3	27	94	0	108	22	22	17	38	1.93
49434515--49434806	27	10.8	26	82	5	278	31	8	19	40	1.82
49434514--49434806	54	5.4	54	85	1	327	31	8	19	40	1.82
49434514--49434806	81	3.6	80	84	2	329	31	8	19	40	1.82
49442588--49442703	31	3.8	31	94	1	189	24	24	17	34	1.96
49442908--49442988	26	3.2	25	86	10	94	28	23	23	24	2.00
49442921--49443016	26	3.8	26	90	2	135	26	22	26	25	2.00
49445205--49445237	15	2.2	15	89	10	50	51	15	6	27	1.66
49454507--49454549	14	2.8	16	75	13	54	27	4	2	65	1.25
49460741--49460864	46	2.7	45	80	7	135	25	20	30	23	1.98
49464417--49464657	43	5.6	43	94	0	401	31	32	24	11	1.91
49464655--49464773	38	3.1	38	87	2	139	28	25	22	23	1.99
49469602--49469639	20	1.9	20	100	0	76	26	5	7	60	1.46
49483852--49483982	65	2.0	65	92	0	217	44	16	12	25	1.84
49488048--49488178	65	2.0	65	95	0	235	43	16	14	25	1.86
49496676--49496859	40	4.6	40	82	6	196	23	20	27	28	1.99
49496676--49496856	80	2.3	81	83	9	221	23	20	27	27	1.99
49496757--49496906	40	3.8	38	80	10	131	25	22	28	24	1.99
49509445--49509509	24	2.6	26	80	7	80	24	15	20	40	1.91
49512395--49512444	24	2.1	24	100	0	100	40	0	24	36	1.55
49512744--49512900	43	3.7	42	71	10	122	23	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49520451--49520475	13	1.9	13	100	0	50	32	0	12	56	1.36
49520746--49520809	27	2.4	27	76	2	67	26	6	0	67	1.14
49526697--49526824	46	2.8	46	86	0	175	21	21	27	28	1.99
49532475--49532738	40	6.6	40	88	5	322	26	26	22	23	2.00
49532475--49532736	80	3.3	80	87	5	361	26	27	22	23	2.00
49535353--49535528	46	3.8	46	78	11	189	22	21	27	28	1.99
49535350--49535520	93	1.8	93	89	2	272	22	22	27	27	1.99
49537298--49537342	6	7.5	6	87	0	63	11	2	4	82	0.91
49537298--49537337	12	3.3	12	96	0	71	10	0	5	85	0.75
49540489--49540713	40	5.6	40	86	2	290	19	20	27	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332