Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  167  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55175162--55175248
46
1.9
45
83
6
113
35
1
2
60
1.17
55180334--55180587
55
4.8
52
78
9
214
21
24
17
36
1.94
55185257--55185320
31
2.1
31
93
0
110
34
10
20
34
1.88
55188876--55188909
17
2.0
17
94
0
59
17
35
14
32
1.91
55191340--55191531
40
4.8
41
90
2
257
21
21
30
25
1.99
55195022--55195174
43
3.6
43
74
14
147
32
24
16
25
1.96
55195024--55195200
86
2.1
85
79
13
186
33
24
15
25
1.95
55200703--55200760
24
2.5
23
81
16
66
62
0
5
32
1.18
55201031--55201188
49
3.2
48
95
2
273
31
7
31
30
1.85
55201305--55201383
37
2.1
37
90
0
122
24
18
31
25
1.98
55205870--55206094
40
5.7
40
87
5
280
25
22
27
25
2.00
55217877--55217958
43
1.9
43
87
7
123
35
26
13
24
1.92
55217865--55217968
43
2.4
43
79
4
113
31
25
15
26
1.96
55219397--55219448
21
2.5
21
96
0
95
40
13
3
42
1.62
55223433--55223544
46
2.4
46
86
0
170
41
22
16
20
1.90
55228328--55228451
32
3.8
32
77
8
149
46
6
16
29
1.72
55228360--55228474
23
5.0
23
79
10
146
46
6
16
29
1.73
55228395--55228419
13
1.9
13
100
0
50
60
0
8
32
1.26
55228340--55228474
68
2.0
68
98
0
261
47
5
16
30
1.70
55230563--55230648
45
1.9
45
90
0
136
34
24
13
26
1.93
55239084--55239170
45
1.9
45
95
0
156
35
25
13
25
1.93
55242597--55242641
22
2.0
22
95
0
81
48
17
4
28
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55250882--55250999
39
3.0
38
79
9
130
22
21
25
31
1.98
55260470--55260527
31
1.9
31
85
3
82
46
12
3
37
1.58
55260469--55260539
31
2.4
31
77
13
78
45
12
4
38
1.62
55269246--55269362
62
1.9
60
81
6
137
36
4
9
49
1.55
55272251--55272634
121
3.1
123
80
9
442
28
15
17
39
1.89
55272700--55272827
34
3.8
34
78
7
91
46
11
0
40
1.46
55272724--55272851
68
1.9
68
81
4
159
45
12
0
42
1.42
55272730--55272851
34
3.6
32
81
11
113
45
13
0
41
1.43
55277965--55278009
18
2.7
16
77
12
54
57
2
0
40
1.11
55285299--55285377
15
5.4
15
77
10
83
10
17
13
58
1.63
55285290--55285376
29
3.0
29
81
8
95
10
17
16
56
1.67
55287748--55287923
46
3.8
46
79
12
216
20
21
29
28
1.98
55287744--55287916
93
1.9
93
96
0
319
20
21
30
27
1.98
55289294--55289344
16
3.2
16
91
0
84
41
0
25
33
1.56
55289625--55289672
17
2.9
16
81
9
51
58
0
2
39
1.10
55289534--55289669
58
2.4
56
81
12
147
51
2
2
43
1.29
55293424--55293488
33
2.0
33
90
0
103
33
16
7
41
1.77
55295288--55295349
27
2.4
25
78
7
63
62
9
0
27
1.26
55295312--55295470
51
3.1
51
69
18
168
60
12
0
27
1.33
55295351--55295503
47
3.1
46
68
21
139
58
13
0
28
1.36
55295389--55295450
27
2.4
25
78
7
63
62
9
0
27
1.26
55295210--55295508
101
3.0
101
94
2
502
58
12
1
28
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55296053--55296084
15
2.3
15
89
10
50
28
0
0
71
0.86
55299636--55299686
21
2.4
21
96
0
93
25
27
21
25
1.99
55302443--55302521
39
2.0
39
92
0
131
43
20
8
27
1.81
55306650--55306741
36
2.9
30
75
20
87
29
27
13
30
1.94
55309757--55309981
48
4.7
47
82
5
265
24
29
18
27
1.98
55311609--55311651
12
3.6
12
90
0
59
30
0
0
69
0.88
55311608--55311654
6
7.8
6
79
6
51
29
0
0
70
0.88
55323319--55323551
39
6.0
39
93
0
394
21
24
29
24
1.99
55325849--55326073
48
4.7
48
77
4
202
21
28
20
29
1.98
55336475--55336521
20
2.3
20
96
0
85
21
17
17
44
1.86
55349465--55349506
9
3.8
11
85
14
52
57
4
0
38
1.20
55350480--55350519
11
3.8
10
87
9
53
32
27
0
40
1.57
55350480--55350526
21
2.2
22
84
3
60
27
29
2
40
1.68
55351681--55351705
7
3.6
7
100
0
50
28
0
12
60
1.32
55352202--55352269
30
2.3
30
89
0
100
26
42
20
10
1.84
55352609--55352653
21
2.2
21
92
4
74
31
42
15
11
1.82
55355552--55355872
126
2.5
126
83
0
417
28
15
16
39
1.89
55360743--55360907
40
4.2
40
91
0
260
25
28
22
23
1.99
55362340--55362382
14
3.1
14
80
6
52
58
9
2
30
1.42
55362340--55362378
13
2.9
13
84
3
51
58
10
2
28
1.44
55367894--55367934
20
2.0
20
95
0
73
26
9
7
56
1.58
55368855--55369020
40
4.2
40
96
0
289
26
27
22
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55370454--55370496
14
3.1
14
80
6
52
58
9
2
30
1.42
55370454--55370492
13
2.9
13
84
3
51
58
10
2
28
1.44
55374447--55374481
17
2.1
17
100
0
70
40
25
17
17
1.90
55377930--55377972
11
3.6
12
81
6
52
74
2
2
20
1.04
55383032--55383155
56
2.2
55
87
10
169
41
2
4
52
1.33
55388718--55388749
12
2.6
13
85
14
50
12
6
0
81
0.87
55388719--55388758
11
3.6
11
80
12
55
15
5
0
80
0.88
55388753--55388818
34
1.9
34
81
9
80
21
10
0
68
1.19
55391645--55391684
13
3.0
13
85
7
53
67
0
5
27
1.11
55393443--55393483
21
2.0
21
90
0
64
43
12
4
39
1.63
55395566--55395778
79
2.7
79
80
8
229
26
27
20
25
1.99
55395580--55395778
40
5.0
40
82
7
228
26
28
21
24
1.99
55398279--55398339
30
2.0
30
100
0
122
42
6
22
27
1.78
55405774--55405822
22
2.3
22
82
10
57
24
22
8
44
1.79
55408067--55408135
34
2.0
35
88
2
104
27
17
15
39
1.90
55415540--55415746
53
3.8
53
77
3
216
20
23
17
38
1.93
55426593--55426771
39
4.5
39
86
7
220
20
23
27
29
1.99
55428511--55428639
50
2.5
51
90
5
199
35
16
22
25
1.94
55428615--55428763
31
4.8
31
89
3
210
29
20
25
24
1.99
55428789--55428952
47
3.6
48
83
8
166
29
15
26
28
1.96
55428883--55428979
42
2.3
42
92
3
160
30
14
26
27
1.95
55430091--55430233
53
2.6
55
81
4
166
21
24
18
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55431765--55431811
24
2.0
24
84
16
62
51
17
0
31
1.46
55432452--55432513
19
3.3
19
77
4
54
3
20
3
72
1.13
55432446--55432504
30
1.9
31
86
6
84
1
23
3
71
1.11
55433440--55433522
42
2.0
42
92
0
139
31
20
18
30
1.96
55436306--55436483
50
3.7
49
80
6
193
25
16
31
26
1.97
55436306--55436483
49
3.7
47
82
7
198
25
16
31
26
1.97
55436306--55436483
47
3.7
47
79
10
198
25
16
31
26
1.97
55444080--55444246
46
3.6
46
76
6
176
29
19
26
24
1.99
55444847--55444883
9
4.1
9
85
0
56
48
13
8
29
1.71
55445371--55445451
17
4.6
17
68
20
51
37
2
2
58
1.25
55445908--55445944
5
7.4
5
100
0
74
21
18
18
40
1.91
55446856--55446895
21
2.0
20
95
5
71
12
40
30
17
1.86
55454947--55455446
47
10.5
47
94
1
838
33
8
29
29
1.87
55455565--55455643
37
2.1
37
88
0
113
25
18
30
25
1.98
55463800--55463831
3
10.7
3
100
0
64
31
0
0
68
0.90
55463799--55463872
6
12.0
6
85
5
67
25
2
0
71
0.99
55468372--55468426
21
2.7
20
79
20
60
16
36
21
25
1.94
55469035--55469346
89
3.5
89
88
2
448
24
25
16
32
1.96
55471398--55471467
6
11.0
6
83
8
77
22
1
1
74
0.98
55471431--55471465
13
2.8
12
87
8
52
20
2
0
77
0.90
55471398--55471467
19
3.7
18
79
9
77
22
1
1
74
0.98
55472842--55473152
89
3.5
89
86
0
417
22
22
18
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55476222--55476314
44
2.1
45
87
2
134
24
29
22
23
1.99
55478101--55478305
27
7.6
27
83
3
223
26
15
29
29
1.96
55478102--55478305
54
3.8
54
84
3
257
25
15
29
29
1.96
55486262--55486466
27
7.6
27
83
3
223
26
15
28
29
1.96
55486263--55486466
54
3.8
54
84
3
257
25
15
28
29
1.96
55487816--55487937
45
2.7
45
93
0
217
30
26
22
21
1.99
55498954--55498987
17
2.0
17
88
11
52
35
0
17
47
1.48
55512665--55512717
21
2.5
21
81
3
61
43
9
11
35
1.73
55516010--55516054
18
2.4
20
75
14
51
35
4
6
53
1.47
55524370--55524444
37
2.0
37
100
0
150
34
5
29
30
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332