Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  331  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108679305--108679386
25
3.3
25
87
3
94
62
12
7
18
1.52
108679556--108679645
42
2.1
42
91
0
144
32
4
13
50
1.61
108682098--108682129
13
2.5
13
89
0
55
59
0
3
37
1.13
108688739--108688808
36
1.9
36
97
0
131
34
5
18
41
1.74
108695856--108695898
23
1.9
23
85
4
61
20
9
16
53
1.70
108698261--108698340
35
2.4
33
81
12
83
41
2
5
51
1.37
108701462--108701502
9
4.6
9
96
0
73
46
17
9
26
1.79
108701521--108701562
14
3.2
12
84
15
57
19
0
2
78
0.86
108701521--108701562
6
6.5
6
86
13
57
19
0
2
78
0.86
108701521--108701567
20
2.4
19
89
10
76
23
0
2
74
0.93
108707749--108707792
21
2.0
22
91
4
72
20
20
38
20
1.94
108709908--108709951
21
2.1
21
86
0
61
65
2
0
31
1.05
108713490--108713552
31
2.0
31
100
0
126
31
12
19
36
1.89
108716098--108716129
3
10.7
3
100
0
64
65
0
0
34
0.93
108718332--108718371
20
2.0
20
95
0
71
37
15
5
42
1.68
108720221--108720701
237
2.0
236
87
2
678
44
22
11
21
1.83
108723185--108723224
20
2.0
20
85
5
53
22
2
32
42
1.67
108724066--108724101
16
2.2
16
100
0
72
25
0
36
38
1.56
108724337--108724371
18
2.0
17
88
5
52
54
0
0
45
0.99
108724315--108724722
120
3.4
120
92
2
662
50
4
0
43
1.27
108724457--108724660
56
3.6
56
71
21
181
51
4
0
42
1.28
108724592--108724697
38
2.9
37
75
20
98
50
3
0
44
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108737932--108738113
88
2.1
88
94
0
319
43
13
10
31
1.79
108743248--108743280
17
1.9
17
93
0
57
57
3
0
39
1.14
108746918--108746948
2
15.5
2
100
0
62
48
0
0
51
1.00
108751267--108751326
29
2.0
30
81
9
70
43
11
5
40
1.63
108754344--108754384
13
2.9
14
85
10
57
36
7
9
46
1.65
108764968--108765048
15
5.3
15
70
20
60
45
0
2
51
1.14
108764966--108765033
34
2.1
32
88
5
100
48
0
2
48
1.16
108765060--108765090
16
2.0
16
93
6
55
38
0
0
61
0.96
108765532--108765564
17
2.1
16
88
11
50
30
0
0
69
0.88
108765610--108765668
21
2.8
22
85
7
70
23
0
6
69
1.12
108765639--108765698
26
2.4
24
83
8
75
28
0
3
68
1.05
108777775--108777806
15
2.1
15
100
0
64
31
25
31
12
1.92
108784630--108784885
142
1.8
139
83
7
338
38
21
17
22
1.93
108789385--108789574
105
1.8
105
89
0
299
29
21
23
26
1.99
108800436--108800483
25
2.0
24
84
8
62
14
2
14
68
1.30
108827097--108827145
22
2.2
22
100
0
98
22
14
22
40
1.90
108828601--108828826
115
2.0
108
84
10
287
32
8
15
42
1.77
108837518--108837554
19
1.9
19
94
0
65
37
13
10
37
1.80
108839164--108839197
17
2.0
17
94
0
59
44
50
0
5
1.26
108843803--108843836
17
2.0
17
94
0
59
44
50
0
5
1.26
108846085--108846130
2
23.0
2
95
0
83
47
2
50
0
1.13
108847472--108847546
39
2.0
37
89
5
114
34
12
12
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108848775--108848834
31
1.9
31
86
6
86
50
6
20
23
1.71
108849257--108849290
11
3.1
11
100
0
68
26
17
29
26
1.98
108858842--108858879
18
2.1
18
100
0
76
39
10
18
31
1.85
108864639--108864695
29
2.0
27
87
12
80
52
0
0
47
1.00
108867581--108867634
19
2.8
20
77
8
58
46
11
11
31
1.74
108867604--108867723
18
6.8
18
74
16
92
40
11
15
32
1.83
108867569--108867723
17
8.8
17
73
10
107
42
11
13
32
1.80
108867569--108867723
35
4.4
34
70
11
100
42
11
13
32
1.80
108873147--108873491
147
2.3
145
85
7
462
31
15
20
33
1.93
108873161--108873496
75
4.5
73
87
5
453
31
15
20
32
1.94
108873718--108874039
88
3.8
86
81
11
298
29
17
19
33
1.95
108873896--108874475
72
7.9
72
93
2
892
31
16
19
32
1.95
108874551--108874778
127
1.8
126
85
2
323
25
15
23
35
1.95
108875711--108875752
22
1.9
22
85
0
57
76
11
4
7
1.15
108876693--108876736
18
2.5
17
89
10
63
25
0
4
70
1.06
108876697--108876738
16
2.7
16
79
17
52
23
0
7
69
1.13
108877685--108877820
17
7.8
17
70
10
87
32
13
12
41
1.83
108877729--108877787
18
3.3
18
79
11
77
32
15
11
40
1.83
108878399--108878475
40
1.9
41
83
2
102
40
7
12
38
1.73
108879664--108879698
3
11.7
3
87
0
52
28
0
5
65
1.15
108882249--108882287
13
3.2
12
82
10
53
46
0
0
53
1.00
108884397--108884542
53
2.7
53
90
4
213
29
28
15
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108888211--108888380
30
5.7
30
95
0
304
7
15
48
28
1.71
108888211--108888416
90
2.2
92
90
5
317
8
15
48
28
1.74
108888211--108888444
30
7.4
32
88
9
274
8
14
48
27
1.74
108888364--108888437
36
2.2
32
78
19
89
12
17
45
24
1.82
108890668--108890694
3
9.0
3
100
0
54
33
0
0
66
0.92
108897804--108897841
17
2.2
18
85
4
51
42
0
0
57
0.98
108899128--108899184
18
3.2
18
87
0
78
29
24
14
31
1.94
108899134--108899188
18
3.1
18
89
0
83
32
21
12
32
1.91
108903887--108903936
26
1.9
26
100
0
100
36
8
12
44
1.71
108905240--108905974
210
3.7
196
81
6
772
22
17
15
43
1.87
108912435--108912477
22
2.0
22
86
4
61
60
0
0
39
0.97
108912440--108912473
14
2.4
14
95
0
59
61
0
0
38
0.96
108917925--108917950
3
8.7
3
100
0
52
69
0
0
30
0.89
108922498--108922538
21
2.0
21
90
0
64
29
21
29
19
1.98
108929012--108929097
43
2.0
43
100
0
172
16
23
11
48
1.78
108930676--108930719
22
1.9
24
90
9
74
25
20
0
54
1.45
108931598--108931630
15
2.1
16
88
5
50
42
9
0
48
1.35
108934469--108934526
29
2.0
30
82
3
73
27
8
15
48
1.74
108934803--108934880
31
2.5
31
97
0
147
47
3
5
43
1.43
108937858--108938072
78
3.0
69
80
11
268
25
47
9
16
1.77
108938063--108938178
36
3.2
36
81
0
151
29
45
5
19
1.72
108938113--108938235
57
2.2
57
92
0
201
32
41
4
21
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108938149--108938199
21
2.4
21
86
0
66
35
41
5
17
1.74
108938063--108938305
129
1.9
129
95
1
443
30
44
5
20
1.73
108938170--108938448
36
7.8
36
81
0
333
28
43
5
22
1.75
108938077--108938271
93
2.1
93
82
1
230
30
44
5
19
1.74
108938444--108938711
81
3.0
89
84
10
324
27
48
12
11
1.76
108938444--108938699
45
5.8
45
83
8
314
27
47
12
12
1.77
108938457--108938711
42
5.8
41
81
13
174
27
48
12
10
1.75
108938570--108938711
42
3.5
42
85
5
209
28
50
11
10
1.71
108939290--108939358
29
2.3
29
82
5
75
46
7
10
36
1.65
108941566--108941618
20
2.7
20
74
11
54
39
7
3
49
1.49
108941693--108941745
20
2.7
19
80
8
52
41
7
5
45
1.56
108941836--108941891
20
2.8
19
73
7
58
44
12
3
39
1.60
108949201--108949256
9
5.8
9
80
14
58
26
1
3
67
1.16
108949213--108949256
21
2.1
21
88
12
65
25
2
0
72
0.96
108952789--108953483
225
3.0
231
81
5
761
17
27
11
43
1.83
108960312--108960348
18
2.1
18
90
10
58
43
0
2
54
1.14
108964701--108964735
2
17.5
2
100
0
70
0
0
48
51
1.00
108977298--108977351
2
27.0
2
92
0
90
1
48
1
48
1.23
108981901--108981926
6
4.3
6
100
0
52
84
0
0
15
0.62
108989447--108989484
19
2.0
19
89
0
58
26
26
0
47
1.52
108994564--108994597
17
2.0
17
94
0
59
44
50
0
5
1.26
108999202--108999235
17
2.0
17
94
0
59
44
50
0
5
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108999701--108999757
29
2.0
29
100
0
114
10
14
33
42
1.79
109004823--109004889
33
2.0
33
100
0
134
29
5
17
46
1.72
109006591--109006625
4
8.8
4
100
0
70
22
0
25
51
1.48
109010572--109010605
13
2.4
14
90
9
52
67
2
0
29
1.05
109018972--109019268
104
3.1
92
80
12
362
36
14
14
34
1.88
109018916--109019174
104
2.5
106
87
3
362
39
16
12
31
1.86
109019081--109019268
93
2.0
92
91
1
304
34
14
15
35
1.88
109023727--109023752
12
2.2
12
100
0
52
69
0
7
23
1.14
109023570--109023823
105
2.3
109
87
6
372
34
12
15
37
1.86
109030137--109030174
20
1.9
20
84
10
51
52
0
13
34
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332