Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  318  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104436649--104436739
37
2.5
36
75
12
98
60
4
1
34
1.24
104437172--104437208
19
1.9
19
88
0
56
37
0
8
54
1.30
104437172--104437229
20
3.0
20
80
7
57
39
1
5
53
1.33
104438317--104438691
186
2.0
187
95
3
684
41
8
7
42
1.64
104441936--104441961
2
13.0
2
100
0
52
50
0
0
50
1.00
104442273--104442311
19
2.0
20
85
14
55
33
7
0
58
1.26
104442785--104442835
22
2.3
22
83
10
59
29
9
1
58
1.41
104443437--104443675
131
1.8
131
79
3
275
27
20
17
33
1.96
104444599--104444644
25
1.9
23
91
8
74
52
0
2
45
1.13
104445419--104445470
24
2.2
24
89
0
77
55
9
1
32
1.43
104447378--104447429
24
2.2
24
89
0
77
55
9
1
32
1.43
104449424--104449699
134
2.0
137
93
6
479
55
11
3
28
1.53
104452038--104452078
21
2.0
21
85
9
57
43
0
4
51
1.23
104452385--104452422
20
1.9
19
89
5
58
65
0
5
28
1.14
104452602--104452634
16
2.1
16
88
5
50
75
3
0
21
0.93
104452642--104452799
79
2.0
79
100
0
316
29
18
12
39
1.88
104466640--104466680
15
2.7
15
88
7
57
60
2
7
29
1.36
104466670--104466726
27
2.1
27
80
3
62
66
1
17
14
1.33
104468815--104468949
39
3.4
39
76
8
123
23
20
27
28
1.99
104471214--104471245
15
2.1
16
94
5
57
0
28
0
71
0.86
104472383--104472417
18
2.0
18
94
5
63
42
0
0
57
0.99
104472382--104472421
18
2.4
17
84
15
57
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104482204--104482266
21
3.0
22
73
19
64
34
0
1
63
1.04
104488581--104488661
40
2.0
40
97
0
153
25
12
14
46
1.80
104489635--104489675
22
1.9
22
85
5
57
24
7
0
68
1.15
104492727--104492785
31
2.0
30
83
6
75
47
11
8
32
1.70
104492722--104492788
31
2.3
27
78
14
71
44
10
8
35
1.70
104498515--104498591
15
5.1
15
65
12
50
25
24
22
27
2.00
104498599--104498677
15
5.3
15
67
11
63
26
25
24
24
2.00
104498716--104498898
33
5.7
33
81
7
234
27
19
22
30
1.98
104498738--104498911
15
11.2
15
69
7
96
25
19
23
31
1.98
104498481--104498911
30
14.1
30
82
6
380
25
23
23
27
2.00
104505371--104505404
17
2.1
15
89
10
50
55
0
0
44
0.99
104516505--104516549
22
2.1
22
95
4
83
31
4
4
60
1.37
104516510--104516558
22
2.2
22
85
7
64
26
8
4
61
1.42
104517823--104517891
31
2.2
31
84
5
95
33
15
11
39
1.84
104524644--104524676
12
2.8
12
90
0
57
0
27
21
51
1.48
104530426--104530460
2
17.5
2
100
0
70
51
0
0
48
1.00
104547707--104547748
2
21.0
2
90
0
66
50
45
0
4
1.23
104551066--104551098
16
2.1
16
100
0
66
24
12
27
36
1.91
104550498--104552016
417
3.6
413
83
7
1880
39
12
13
33
1.82
104551774--104552235
248
1.9
247
87
2
685
40
10
14
33
1.81
104553600--104555109
417
3.6
414
84
4
1848
39
12
13
34
1.82
104555807--104555857
24
2.1
24
100
0
102
15
13
3
66
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104556521--104556560
21
1.9
21
94
0
71
22
10
7
60
1.54
104557032--104557069
18
2.1
18
100
0
76
26
13
10
50
1.73
104560174--104561626
418
3.5
417
83
5
1735
39
11
13
35
1.81
104562586--104562612
4
6.8
4
100
0
54
51
0
0
48
1.00
104563485--104563551
34
1.9
35
90
3
109
32
8
13
44
1.75
104564761--104564785
5
5.0
5
100
0
50
0
0
20
80
0.72
104568137--104568166
15
2.0
15
93
0
51
36
0
0
63
0.95
104574706--104574773
34
2.0
34
100
0
136
38
11
26
23
1.89
104580197--104580229
17
2.0
17
88
5
50
42
3
0
54
1.15
104583226--104583263
19
2.0
19
85
10
51
44
2
0
52
1.14
104583763--104583826
32
2.0
33
93
3
112
23
15
0
60
1.34
104589849--104589993
71
2.0
72
97
2
274
15
19
13
51
1.77
104595753--104595785
10
3.1
11
86
8
50
27
3
0
69
1.03
104599170--104599207
20
1.9
20
94
0
67
55
7
0
36
1.29
104606162--104606925
177
4.4
176
86
3
985
29
21
18
29
1.97
104620461--104620626
59
2.8
59
87
5
228
31
14
18
34
1.91
104622427--104622719
146
2.0
146
97
0
550
33
11
18
36
1.87
104632862--104632915
27
2.0
28
85
3
74
42
1
1
53
1.22
104637684--104637721
19
2.0
19
100
0
76
47
5
10
36
1.61
104656772--104656845
34
2.3
33
84
11
93
60
2
6
29
1.36
104656784--104656860
28
2.5
30
82
14
86
61
1
6
31
1.30
104656988--104657018
15
2.1
15
100
0
62
77
6
0
16
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104664690--104664753
22
2.9
23
76
17
73
42
0
0
57
0.98
104664691--104664746
24
2.5
22
83
13
69
41
0
0
58
0.98
104665911--104665951
15
2.6
16
84
7
57
34
2
0
63
1.08
104667595--104667634
17
2.5
17
88
8
57
47
0
2
50
1.14
104677312--104677337
5
5.2
5
100
0
52
80
0
0
19
0.71
104680594--104681077
132
3.7
132
95
0
806
28
22
19
29
1.98
104682936--104682982
22
2.1
23
88
7
71
29
10
4
55
1.53
104683984--104684039
26
2.2
26
96
0
103
35
8
3
51
1.51
104684395--104684454
30
2.0
30
93
0
102
58
11
1
28
1.43
104684487--104684529
22
2.0
22
85
0
59
58
11
11
18
1.63
104690058--104690186
50
2.5
51
87
5
190
34
17
22
25
1.95
104690162--104690341
31
5.8
31
91
0
279
26
21
27
23
1.99
104690406--104690520
42
2.7
42
81
4
133
30
16
25
27
1.97
104692051--104692093
13
3.1
13
78
18
50
79
0
20
0
0.74
104692046--104692093
19
2.5
19
90
6
71
77
0
22
0
0.78
104692062--104692092
16
1.9
16
100
0
62
77
0
22
0
0.77
104696167--104696378
66
3.2
66
80
1
246
28
10
43
17
1.82
104696160--104696378
33
6.6
33
82
6
185
28
10
43
17
1.81
104698433--104698470
17
2.3
16
86
13
51
52
5
0
42
1.24
104699288--104699330
15
2.9
15
85
0
50
67
0
0
32
0.91
104707495--104707526
15
2.1
15
94
0
55
43
6
31
18
1.75
104718509--104718548
21
1.9
21
85
10
55
62
2
0
35
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104724639--104724697
30
1.9
31
86
3
84
47
1
20
30
1.60
104724934--104724978
11
3.9
11
80
11
54
35
0
0
64
0.94
104724929--104724984
24
2.3
24
87
3
76
37
0
1
60
1.07
104727101--104727262
46
3.5
46
95
0
288
40
12
24
22
1.88
104728753--104728785
17
1.9
17
93
0
57
6
18
9
66
1.40
104738693--104738769
32
2.4
33
91
4
131
28
0
7
63
1.22
104750294--104750358
31
2.1
32
82
2
78
26
15
15
43
1.86
104751445--104751536
47
2.0
47
100
0
184
44
10
17
27
1.82
104754827--104754918
48
1.9
48
95
0
166
29
19
21
29
1.98
104758075--104758120
23
2.0
23
84
12
60
45
10
6
36
1.65
104758082--104758126
23
2.0
23
82
8
56
40
13
8
37
1.76
104766051--104766251
108
1.9
108
95
0
366
42
10
4
42
1.59
104767364--104767431
34
2.0
34
94
0
118
33
10
30
25
1.89
104768032--104768087
29
1.9
29
85
7
78
44
3
5
46
1.43
104770621--104770654
14
2.4
14
95
0
59
67
0
5
26
1.13
104770579--104770647
28
2.6
26
73
10
68
68
1
7
23
1.23
104771308--104771348
19
2.1
20
86
4
57
36
0
0
63
0.95
104771318--104771367
25
1.9
27
84
8
68
36
0
0
64
0.94
104771863--104771908
16
2.9
16
87
9
60
32
0
0
67
0.91
104775698--104775786
44
2.0
44
93
0
151
29
22
8
39
1.84
104777351--104777406
24
2.4
24
76
8
62
55
0
1
42
1.10
104779517--104779599
30
2.7
30
81
5
87
32
3
12
51
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104783312--104783372
31
2.0
31
87
6
88
24
21
21
32
1.98
104795403--104795461
27
2.2
26
78
3
64
64
0
0
35
0.94
104795427--104795455
8
3.8
8
90
9
51
65
0
0
34
0.93
104795418--104795471
23
2.4
22
81
6
63
64
0
0
35
0.94
104795428--104795464
15
2.4
15
90
4
56
62
0
0
37
0.96
104798795--104798837
23
1.9
23
85
4
61
39
6
2
51
1.42
104799738--104799770
16
2.1
16
100
0
66
39
6
12
42
1.67
104801075--104801189
30
3.8
30
95
1
194
43
6
24
26
1.77
104801075--104801179
15
7.0
15
66
12
72
44
6
22
25
1.77
104805763--104805870
15
7.2
15
67
12
78
44
7
22
25
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332