genome.fa.s13.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  111  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35867420--35867451	13	2.5	13	100	0	64	12	31	25	31	1.92
35872017--35872068	27	2.0	26	84	3	68	17	26	21	34	1.95
35883143--35883234	42	2.2	42	100	0	184	31	20	16	31	1.95
35883382--35883451	25	2.8	25	91	4	106	25	24	25	24	2.00
35884378--35884475	27	3.6	27	76	13	92	34	9	17	38	1.81
35884465--35884624	27	6.0	26	76	5	149	30	11	19	38	1.87
35884443--35884591	81	1.8	81	88	5	230	30	8	18	42	1.79
35884623--35884821	27	7.3	27	85	2	247	39	7	23	30	1.81
35887718--35887769	23	2.3	22	75	21	54	9	23	1	65	1.32
35891720--35891752	12	2.6	13	85	9	50	12	24	0	63	1.28
35895667--35895708	22	1.9	22	85	9	59	11	23	0	64	1.27
35895679--35895745	27	2.5	26	79	13	73	11	26	0	61	1.31
35895701--35895735	16	2.2	16	90	10	54	11	22	0	65	1.24
35895729--35895775	20	2.4	19	86	13	60	4	27	2	65	1.22
35905825--35905997	46	3.7	46	78	13	210	21	21	28	28	1.99
35905822--35905992	93	1.8	93	94	0	306	21	22	29	27	1.99
35910235--35910301	26	2.6	26	85	4	82	31	17	28	22	1.97
35910207--35910354	27	5.5	27	75	10	115	26	18	27	27	1.98
35913514--35913572	29	2.0	29	93	0	100	47	0	22	30	1.51
35915149--35915181	18	1.9	17	88	11	50	21	15	9	54	1.68
35916404--35916498	43	2.2	43	83	7	113	27	16	24	31	1.97
35916519--35916564	22	2.1	22	100	0	92	43	17	10	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35917910--35917945	18	2.0	18	100	0	72	55	0	16	27	1.42
35919898--35919999	27	3.8	27	85	5	134	18	25	21	34	1.96
35920130--35920186	19	3.4	19	64	31	56	19	17	15	47	1.83
35920130--35920230	31	3.3	31	90	0	148	19	17	14	47	1.82
35920142--35920241	6	16.3	6	74	12	78	21	18	13	48	1.81
35921000--35921129	49	2.7	49	90	0	206	25	16	20	37	1.93
35921803--35921868	33	2.0	33	96	0	123	33	10	9	46	1.70
35927534--35928218	47	14.6	47	96	0	1199	31	8	30	29	1.87
35928090--35928168	25	3.3	25	64	16	67	35	5	27	31	1.79
35946515--35946807	50	5.8	50	80	7	308	25	17	24	31	1.97
35949534--35949590	30	1.9	30	88	0	87	38	5	22	33	1.77
35957013--35957073	30	2.0	30	90	0	95	37	8	24	29	1.84
35980018--35980152	42	3.1	43	82	6	166	25	20	27	26	1.99
35980075--35980180	42	2.5	42	82	1	131	29	20	24	25	1.99
35984334--35984387	16	3.4	16	89	0	90	44	9	16	29	1.79
35985436--35985490	28	1.9	29	85	3	76	20	43	20	16	1.88
35989050--35989099	25	2.0	25	92	0	82	28	8	32	32	1.86
35993598--35993713	39	3.0	39	88	0	169	26	26	21	25	1.99
35997901--35998155	55	4.8	53	82	6	268	36	15	24	23	1.94
35997909--35998108	108	1.8	110	92	2	341	35	15	25	24	1.94
36001740--36001988	39	6.4	39	89	0	365	30	29	21	18	1.97
36002061--36002133	28	2.6	28	80	0	83	27	21	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36009235--36009301	20	3.3	20	87	0	98	34	13	19	32	1.91
36009352--36009431	25	3.2	25	89	7	126	31	18	22	27	1.97
36009350--36009422	24	3.0	24	92	4	128	28	20	21	28	1.98
36009616--36009678	31	2.0	31	93	0	108	36	15	23	23	1.94
36021983--36022033	20	2.5	20	100	0	102	31	19	19	29	1.97
36022083--36022179	25	4.0	24	86	9	135	28	20	22	27	1.99
36022083--36022179	48	2.0	49	86	9	137	28	20	22	27	1.99
36022371--36022434	31	2.1	31	90	0	101	35	15	25	23	1.94
36024657--36024911	55	4.8	54	80	11	280	35	17	24	21	1.95
36024665--36024864	108	1.8	110	89	4	316	34	17	25	23	1.96
36028136--36028248	43	2.6	42	80	5	120	28	19	23	28	1.98
36035110--36035265	43	3.7	42	72	13	124	24	18	29	27	1.98
36041636--36042197	47	11.6	47	88	6	800	29	29	8	33	1.87
36041754--36042197	96	4.6	96	93	2	775	29	28	8	33	1.87
36047221--36047312	40	2.3	40	83	7	109	14	13	34	38	1.84
36058414--36058508	40	2.4	39	85	3	120	12	11	37	37	1.80
36064692--36064803	29	3.9	29	82	6	131	29	14	29	26	1.95
36065848--36065881	18	1.9	18	88	5	52	38	20	11	29	1.88
36071960--36072002	16	2.7	16	81	0	50	51	13	20	13	1.76
36075144--36075953	47	16.9	47	93	3	1350	32	8	29	29	1.87
36075144--36075953	96	8.5	96	94	2	1391	32	8	29	29	1.87
36076072--36076150	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36078699--36078747	4	12.2	4	100	0	98	51	24	0	24	1.49
36080733--36080788	29	2.0	29	89	3	87	26	26	0	46	1.53
36082736--36082777	20	2.2	20	86	4	59	19	28	16	35	1.93
36086355--36086433	27	3.0	27	77	5	81	36	18	13	30	1.90
36087805--36087847	17	2.5	18	85	11	63	37	6	20	34	1.80
36099919--36099970	27	2.0	26	84	3	68	17	26	21	34	1.95
36105818--36106040	27	8.2	27	79	2	232	41	21	17	19	1.90
36105818--36106051	54	4.3	54	84	4	274	40	22	16	20	1.91
36105870--36106066	27	7.3	26	75	14	103	40	20	17	21	1.92
36106030--36106192	27	6.0	27	78	2	139	27	14	20	37	1.92
36106458--36106514	23	2.5	23	91	0	96	26	3	47	22	1.67
36110712--36110836	6	20.3	6	69	16	69	49	12	17	20	1.79
36110733--36110802	25	2.8	25	88	0	104	48	11	20	20	1.79
36110735--36110836	31	3.3	31	71	15	93	49	12	17	20	1.79
36111059--36111110	27	2.0	26	84	3	68	34	17	26	21	1.95
36111346--36111664	27	11.8	27	85	2	390	41	7	21	30	1.80
36111346--36111664	81	3.9	82	85	2	430	41	7	21	30	1.80
36111685--36111820	54	2.5	52	75	8	119	27	8	24	39	1.84
36111698--36111820	27	4.6	26	73	8	86	26	8	25	39	1.85
36113865--36113937	31	2.4	31	90	0	110	47	10	19	21	1.79
36113842--36113909	25	2.7	25	90	0	109	47	13	20	19	1.82
36114056--36114115	27	2.3	26	82	2	66	36	20	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36114164--36114215	27	2.0	26	84	3	68	34	21	26	17	1.95
36114452--36114806	27	13.1	27	86	2	417	40	7	21	30	1.80
36114783--36114960	54	3.3	53	75	5	169	28	10	21	39	1.86
36114813--36114952	27	5.2	26	75	10	95	28	10	20	40	1.86
36117218--36117373	43	3.7	43	80	6	192	24	18	27	29	1.98
36117219--36117373	84	1.8	84	86	5	224	24	18	27	29	1.98
36124029--36124064	15	2.5	15	90	4	56	47	19	5	27	1.72
36124762--36124929	43	4.0	42	70	7	117	25	16	26	31	1.96
36126658--36126831	27	6.4	27	83	4	197	27	14	27	29	1.96
36126659--36126814	82	1.9	81	88	3	233	26	15	28	29	1.96
36131793--36131933	51	2.8	50	83	2	185	26	19	24	29	1.99
36134642--36134680	15	2.5	15	91	4	60	15	12	15	56	1.68
36136479--36136620	27	5.3	27	76	3	99	39	21	7	30	1.82
36136471--36136664	54	3.6	54	76	6	151	38	22	8	30	1.85
36136560--36136628	27	2.6	27	90	0	102	42	20	7	30	1.79
36136560--36136647	27	3.3	27	85	0	86	40	20	7	30	1.81
36136703--36136974	27	10.1	27	85	1	339	37	19	19	23	1.94
36137627--36137678	27	2.0	26	84	3	68	17	26	21	34	1.95
36140469--36140653	50	3.7	49	82	2	217	24	18	26	30	1.98
36144245--36144296	25	2.1	25	89	3	79	23	19	23	34	1.96
36144491--36144738	27	9.2	27	85	0	289	40	7	22	30	1.81
36144491--36144738	54	4.6	54	85	2	345	40	7	22	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36152678--36152774	34	3.0	31	76	18	90	23	20	23	31	1.98
36157523--36157711	35	5.3	35	85	3	236	16	11	29	42	1.83
36158823--36158885	31	2.0	31	100	0	126	31	3	23	41	1.70
36158982--36159069	43	2.0	43	97	0	167	15	7	30	45	1.75
36159646--36159682	18	2.1	18	100	0	74	32	16	21	29	1.95
36168518--36168655	27	5.1	27	84	5	172	36	18	19	25	1.94
36168521--36168690	54	3.1	54	84	5	200	35	19	20	24	1.95
36168665--36168716	27	2.0	26	84	3	68	26	23	19	30	1.98
36173759--36173819	30	2.0	30	83	0	77	29	22	6	40	1.79
36192333--36192556	40	5.7	40	80	9	226	25	28	20	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332