genome.fa.s13.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  98  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31499153--31499287	64	2.1	64	90	4	211	40	9	3	45	1.54
31499321--31499391	24	3.0	24	89	0	115	29	18	8	43	1.79
31499565--31499634	29	2.4	29	92	4	115	45	1	0	52	1.09
31499738--31500034	9	32.6	9	74	8	163	48	14	1	36	1.52
31499745--31500034	71	4.1	71	75	10	216	48	14	1	36	1.52
31499873--31500070	43	4.7	43	73	12	205	47	14	0	37	1.49
31499814--31500070	123	2.1	123	90	2	408	47	14	0	37	1.50
31499966--31500005	17	2.4	17	86	0	53	55	5	2	37	1.35
31501569--31501742	46	3.8	46	76	14	178	21	20	28	29	1.98
31501561--31501734	93	1.9	93	89	2	269	21	20	29	29	1.98
31503753--31503850	27	3.5	28	90	2	135	26	13	28	31	1.94
31503781--31503863	27	3.0	27	87	5	96	30	12	25	32	1.92
31503753--31503864	28	4.0	27	83	6	98	28	12	25	33	1.92
31511854--31511951	27	3.5	28	90	2	135	26	13	28	31	1.94
31511882--31511964	27	3.0	27	87	5	96	30	12	25	32	1.92
31511854--31511965	28	4.0	27	83	6	98	28	12	25	33	1.92
31519210--31519238	14	2.1	14	93	6	51	34	0	6	58	1.25
31529348--31529388	22	1.9	21	85	14	57	39	4	14	41	1.67
31530177--31530210	17	1.9	18	88	5	52	79	2	0	17	0.86
31530793--31530834	15	2.8	15	89	7	59	33	7	0	59	1.25
31546623--31546670	15	3.2	15	84	0	69	25	6	47	20	1.73
31548262--31548297	18	1.9	19	88	5	56	27	13	8	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31549526--31549617	28	3.2	28	93	1	148	25	32	13	29	1.93
31550122--31550161	21	1.9	21	84	0	53	35	25	10	30	1.88
31553214--31553314	27	3.8	25	82	7	112	44	7	14	32	1.75
31557988--31558117	40	3.2	40	62	23	92	43	3	20	32	1.69
31573169--31573427	68	3.9	64	73	12	197	24	29	15	30	1.95
31579285--31579913	47	13.4	47	93	0	997	34	9	30	26	1.87
31606876--31606934	28	2.1	29	84	9	77	30	22	3	44	1.69
31613500--31613684	40	4.7	40	81	7	200	24	22	27	26	2.00
31613500--31613684	79	2.3	81	82	7	218	24	22	27	26	2.00
31613553--31613717	40	4.2	39	84	7	167	26	21	26	26	1.99
31613553--31613717	79	2.1	79	83	6	201	26	21	26	26	1.99
31617273--31617452	39	4.7	38	73	15	145	25	27	22	24	2.00
31617301--31617396	36	2.5	38	85	8	124	26	27	20	26	1.99
31626979--31627086	26	4.2	26	92	0	180	33	7	23	36	1.83
31626979--31627086	52	2.1	52	98	0	207	33	7	23	36	1.83
31631377--31631552	46	3.8	46	78	14	200	19	19	30	30	1.97
31631373--31631545	93	1.9	93	93	2	303	20	19	30	29	1.97
31633533--31633565	15	2.2	15	100	0	66	21	36	30	12	1.90
31634306--31634375	36	1.9	36	85	5	97	34	12	24	28	1.92
31641219--31641252	10	3.4	10	87	0	50	79	5	2	11	1.02
31641258--31641360	34	3.2	31	71	14	82	69	2	13	13	1.29
31642278--31642325	20	2.5	18	83	12	60	81	6	12	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31647075--31647222	28	5.3	28	93	0	233	20	18	30	30	1.97
31647254--31647357	27	3.9	27	72	0	82	38	25	5	30	1.79
31647350--31647519	27	6.3	27	88	0	214	38	19	17	24	1.92
31647342--31647520	54	3.3	54	90	0	259	39	19	16	25	1.92
31647342--31647537	27	7.3	27	81	5	157	38	19	17	25	1.93
31647342--31647536	81	2.4	81	83	1	230	38	18	17	25	1.93
31648087--31648161	28	2.8	26	82	9	87	21	22	20	36	1.96
31648279--31648347	6	11.3	6	76	14	70	17	18	14	49	1.80
31650363--31650420	30	1.9	31	82	10	75	53	12	20	13	1.72
31658548--31658873	48	6.8	48	79	3	350	26	18	28	26	1.98
31658544--31658878	96	3.5	96	89	3	469	26	18	28	26	1.98
31662213--31662307	44	2.2	43	90	1	145	22	14	29	33	1.94
31665417--31665601	79	2.3	80	80	7	198	24	22	27	25	2.00
31665417--31665601	40	4.7	40	80	6	198	24	22	27	25	2.00
31669816--31669923	26	4.2	26	91	0	153	35	22	8	34	1.84
31669816--31669923	52	2.1	52	91	0	171	35	22	8	34	1.84
31676855--31676886	15	2.0	17	88	11	50	25	0	31	43	1.55
31691794--31691927	54	2.5	54	93	0	223	29	23	18	27	1.98
31694552--31694771	46	4.7	46	73	14	141	25	28	18	27	1.98
31697041--31697198	42	3.8	42	89	4	234	22	18	24	34	1.96
31705546--31705799	55	4.8	53	79	8	234	22	25	17	35	1.95
31705593--31705789	108	1.8	109	84	5	274	23	25	16	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31709003--31709140	40	3.5	40	87	6	176	23	28	23	23	2.00
31711384--31711424	21	2.0	21	90	0	64	4	4	53	36	1.44
31711481--31711544	33	1.9	33	90	0	101	23	21	29	25	1.99
31716312--31716488	43	4.1	43	81	11	193	23	29	22	24	1.99
31721337--31721507	93	1.8	93	92	0	288	28	28	21	21	1.99
31721332--31721509	46	3.8	46	77	10	200	28	28	21	22	1.99
31726143--31726287	40	3.7	40	88	5	215	25	27	22	24	2.00
31731629--31731669	21	2.0	21	90	0	64	4	4	53	36	1.44
31737180--31737350	46	3.7	46	80	4	200	21	29	21	28	1.98
31737182--31737353	94	1.8	92	85	4	238	21	29	21	27	1.99
31740932--31741089	43	3.7	43	77	10	146	31	26	16	25	1.96
31751567--31751690	49	2.5	49	88	3	169	23	29	20	26	1.98
31751562--31751883	48	6.8	46	70	12	181	25	27	19	27	1.99
31757362--31757496	47	2.9	46	77	10	166	24	28	17	28	1.97
31757994--31758032	19	2.1	19	100	0	78	38	30	0	30	1.58
31759501--31759539	21	1.9	20	84	5	51	48	25	0	25	1.51
31759514--31759557	20	2.2	20	84	8	54	45	25	0	29	1.54
31764428--31764476	20	2.5	20	83	6	66	36	2	6	55	1.37
31767540--31767589	25	2.0	25	92	0	82	36	24	4	36	1.74
31773895--31773929	16	2.2	16	100	0	70	37	11	11	40	1.77
31777681--31777723	21	2.0	21	81	0	50	34	11	2	51	1.51
31779379--31779424	22	2.0	23	91	8	76	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31782613--31782711	28	3.5	29	83	6	114	30	27	15	27	1.96
31788351--31788396	16	2.6	18	74	25	53	78	4	4	13	1.05
31792142--31792278	39	3.5	39	90	0	211	29	21	24	24	1.99
31797715--31797748	18	1.9	18	88	5	52	29	17	11	41	1.85
31798807--31798902	30	3.3	29	84	8	124	31	30	14	23	1.95
31806199--31806233	18	1.9	18	88	0	52	28	20	14	37	1.91
31806735--31806769	15	2.2	16	90	5	54	82	2	14	0	0.77
31806735--31806769	17	2.1	16	89	5	52	82	2	14	0	0.77
31809916--31809952	3	12.3	3	94	0	65	0	29	0	70	0.88
31809914--31809968	21	2.6	21	86	11	69	1	27	1	69	1.09
31810351--31810408	28	2.1	28	90	0	89	22	17	17	43	1.88
31810505--31810635	63	2.1	63	85	0	172	26	19	25	29	1.98
31818148--31818209	31	2.0	31	96	0	115	25	11	16	46	1.80
31819899--31820161	40	6.6	40	86	3	307	26	28	20	25	1.99
31838367--31838406	20	2.2	19	86	13	57	0	17	5	77	0.94
31840652--31840825	47	3.7	48	79	9	182	21	29	20	28	1.98
31848217--31848391	47	3.7	49	79	14	167	23	27	20	28	1.99
31848216--31848391	94	1.9	94	84	7	241	23	27	20	28	1.99
31854883--31855055	93	1.9	93	95	0	310	27	30	21	20	1.98
31854876--31855051	46	3.8	46	80	10	205	28	30	21	20	1.98
31857426--31857514	30	3.0	30	79	11	94	56	15	16	11	1.67
31857426--31857508	15	5.6	14	73	10	58	55	16	16	10	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31857437--31857514	15	5.2	15	75	9	70	55	15	16	12	1.70
31861731--31861774	21	2.0	22	86	4	63	20	9	4	65	1.38
31865576--31865628	26	2.0	26	85	7	72	37	22	15	24	1.92
31872055--31872119	32	2.0	32	100	0	130	30	6	24	38	1.80
31881188--31881320	41	3.3	41	87	1	178	32	15	29	22	1.95
31881256--31881320	21	3.1	21	70	12	71	33	20	27	18	1.96
31882131--31882159	14	2.1	14	100	0	58	24	27	0	48	1.51
31887047--31887164	60	2.0	60	100	0	236	23	24	27	24	2.00
31895048--31895162	37	3.1	37	86	5	169	41	29	11	17	1.84
31897408--31897445	20	1.9	20	88	0	58	50	5	13	31	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332