genome.fa.s13.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  162  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53557619--53557664	19	2.5	19	86	6	60	43	8	0	47	1.34
53565797--53566340	47	11.6	47	95	0	935	29	30	8	31	1.86
53565847--53565925	25	3.3	25	66	16	76	31	29	5	34	1.79
53581817--53581891	15	5.0	15	74	6	71	58	16	16	9	1.62
53585003--53585124	22	5.3	22	62	21	61	25	29	11	33	1.91
53584975--53585651	47	14.3	47	92	1	961	27	29	10	32	1.89
53587119--53587238	56	2.1	56	96	0	222	23	22	9	45	1.81
53594047--53594301	81	3.1	81	84	4	345	37	18	17	26	1.93
53594050--53594317	27	9.9	27	81	3	297	37	17	18	26	1.93
53594707--53594771	22	3.0	22	80	8	78	21	24	21	32	1.98
53594930--53595029	27	3.7	26	80	6	110	20	23	21	36	1.96
53595154--53595238	6	13.8	6	78	14	93	18	20	12	48	1.81
53595163--53595233	19	3.8	19	78	10	83	18	21	14	46	1.83
53595154--53595238	37	2.3	37	91	0	143	18	20	12	48	1.81
53597291--53597695	27	15.0	27	84	3	512	35	18	19	26	1.95
53598084--53598148	22	3.0	22	80	8	78	20	26	23	30	1.98
53598332--53598441	27	4.1	27	86	6	127	20	21	21	36	1.95
53598314--53598441	54	2.4	53	77	13	127	20	21	20	37	1.94
53598737--53598780	19	2.4	18	85	7	54	50	2	6	40	1.42
53602672--53602856	79	2.3	81	80	8	209	25	27	22	24	2.00
53602653--53602856	40	5.1	40	80	8	220	25	27	22	25	2.00
53605174--53605241	10	6.5	10	78	10	57	4	26	0	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53605174--53605214	5	8.2	5	84	10	57	0	24	0	75	0.80
53606287--53606349	26	2.3	27	81	8	74	36	25	11	26	1.90
53608674--53608717	19	2.4	19	85	7	56	50	2	6	40	1.42
53608809--53608837	15	1.9	15	100	0	58	41	6	0	51	1.28
53613117--53613179	26	2.3	27	81	8	74	36	25	11	26	1.90
53615371--53615615	27	9.1	27	83	0	292	37	18	18	26	1.93
53616003--53616067	22	3.0	22	75	8	69	21	26	21	30	1.98
53616225--53616329	27	3.9	26	79	9	77	21	21	20	36	1.95
53616504--53616541	18	2.1	18	90	0	58	21	15	10	52	1.72
53620168--53620206	17	2.3	17	90	0	60	17	10	7	64	1.48
53620176--53620214	17	2.4	17	86	4	53	20	10	10	58	1.59
53627182--53627523	27	13.0	27	80	6	128	35	23	8	33	1.85
53627269--53627440	54	3.2	54	91	0	272	29	23	8	38	1.85
53627271--53627440	81	2.1	81	92	0	277	29	23	8	38	1.85
53627284--53627527	54	4.5	54	80	3	204	31	23	8	36	1.85
53627284--53627496	81	2.6	81	86	0	264	31	23	8	35	1.85
53627917--53628004	6	14.3	6	72	17	65	19	19	14	46	1.84
53627917--53627989	31	2.4	31	90	0	110	17	20	15	46	1.84
53629238--53629409	40	4.3	40	84	5	224	27	27	21	23	1.99
53640742--53640859	55	2.1	54	81	6	130	17	24	29	27	1.97
53646248--53646290	13	3.5	12	81	12	52	72	0	2	25	0.97
53648564--53648606	14	2.9	15	86	6	61	25	0	18	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53655486--53655605	56	2.1	56	98	0	231	45	9	23	22	1.81
53656732--53656956	40	5.7	40	84	5	278	24	21	27	25	1.99
53656739--53656989	119	2.1	119	81	7	278	26	20	26	25	1.99
53660731--53660849	58	2.2	53	92	7	193	43	9	23	23	1.82
53661971--53662191	39	5.6	40	81	6	247	25	21	26	25	2.00
53664863--53665078	46	4.7	46	80	11	208	31	28	18	22	1.97
53667821--53667889	15	4.7	15	73	8	61	57	15	14	11	1.64
53667821--53667889	30	2.3	30	80	7	79	57	15	14	11	1.64
53670818--53671084	46	5.8	46	71	16	212	29	26	20	23	1.99
53670827--53671092	93	2.9	92	88	3	374	29	26	19	24	1.99
53676970--53677094	6	20.3	6	69	16	78	48	13	18	19	1.80
53676984--53677094	31	3.6	31	71	9	100	48	13	18	18	1.80
53676981--53677085	37	2.8	37	82	4	122	48	13	19	19	1.80
53677028--53677094	25	2.7	25	88	0	98	47	13	19	19	1.82
53677421--53677480	22	2.7	22	84	5	68	28	23	28	20	1.99
53677862--53677947	27	3.2	27	74	11	86	27	18	23	30	1.98
53677873--53677952	27	3.0	27	88	0	124	23	20	20	36	1.95
53678228--53678278	19	2.7	19	93	0	84	9	47	23	19	1.79
53684189--53684345	78	2.0	78	92	0	260	40	17	12	29	1.85
53687128--53687172	20	2.2	20	88	0	63	53	2	11	33	1.49
53693466--53693528	20	3.2	20	75	8	65	36	17	7	38	1.79
53693518--53693587	20	3.5	20	82	3	88	38	10	10	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53693763--53693909	44	3.3	44	83	6	165	35	17	19	27	1.95
53693767--53693898	22	6.0	22	81	9	144	35	18	19	26	1.95
53700965--53701085	51	2.4	51	80	5	120	29	28	14	28	1.95
53707126--53707169	20	2.2	20	87	0	61	47	2	13	36	1.56
53718722--53718856	54	2.5	54	86	1	191	25	20	18	36	1.95
53718723--53718856	27	5.0	27	84	0	162	25	20	17	36	1.94
53718900--53719112	27	7.9	27	88	1	284	30	9	21	38	1.85
53720592--53720665	37	2.0	37	100	0	148	40	24	13	21	1.89
53728135--53728258	42	3.0	42	87	2	187	25	20	22	31	1.98
53729798--53729861	30	2.1	32	86	11	91	34	9	7	48	1.64
53729978--53730115	43	3.3	42	81	6	163	32	17	22	27	1.96
53729978--53730131	84	1.8	83	82	6	195	31	16	23	28	1.96
53732186--53732224	14	2.7	14	88	4	51	48	15	2	33	1.58
53744161--53744303	51	2.8	50	79	8	148	27	18	22	32	1.97
53744816--53744877	23	2.7	23	76	0	70	37	9	8	45	1.67
53747785--53747817	15	2.2	15	94	0	57	15	15	0	69	1.19
53748783--53748822	21	2.0	20	85	5	53	27	2	20	50	1.61
53749278--53749395	47	2.6	46	85	6	161	29	14	19	36	1.91
53753573--53753795	119	1.9	120	83	6	292	25	27	22	24	2.00
53753571--53753795	40	5.7	40	84	6	278	25	27	22	24	2.00
53761472--53761643	40	4.3	40	85	7	210	26	27	21	24	1.99
53761472--53761696	80	2.8	81	82	9	284	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53761474--53761696	119	1.9	120	83	6	292	25	27	22	24	2.00
53764435--53764537	27	3.9	26	75	5	80	39	23	7	29	1.82
53764435--53764628	54	3.6	54	80	6	198	38	21	9	30	1.86
53764456--53764628	27	6.4	27	80	7	174	36	20	10	31	1.87
53764444--53764629	81	2.3	80	79	6	205	37	22	10	30	1.87
53764659--53765274	27	22.9	27	86	0	750	36	18	20	24	1.95
53765892--53765962	27	2.7	26	86	4	97	19	25	18	36	1.94
53776823--53777007	40	4.7	40	78	6	189	24	22	25	26	2.00
53778593--53778695	43	2.4	43	81	3	127	26	19	24	30	1.98
53778593--53778711	43	2.8	42	80	3	123	26	17	25	30	1.97
53781554--53781724	93	1.8	93	88	0	261	28	29	19	21	1.98
53781546--53781721	46	3.8	46	74	10	169	29	29	19	21	1.98
53784103--53784158	15	3.7	15	86	9	87	60	10	16	12	1.58
53787068--53787238	93	1.8	93	94	0	306	27	29	21	21	1.98
53787060--53787235	46	3.8	46	81	10	214	28	29	21	21	1.98
53789622--53789684	15	4.2	15	82	8	83	60	14	12	12	1.60
53791486--53791662	40	4.4	40	85	4	234	25	27	22	23	2.00
53799871--53800056	39	4.7	39	84	6	157	26	22	26	24	2.00
53799871--53800093	40	5.7	40	85	6	253	26	21	26	25	2.00
53807754--53807974	40	5.7	40	83	10	228	25	22	27	24	2.00
53807754--53807974	79	2.8	77	80	9	243	25	22	27	24	2.00
53807843--53808007	79	2.1	79	84	6	210	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53809536--53809720	40	4.7	40	81	8	173	27	27	21	24	1.99
53809564--53809720	79	2.0	80	82	6	194	26	28	21	24	1.99
53814829--53815054	40	5.7	40	84	5	260	27	27	21	23	1.99
53817016--53817192	40	4.4	40	82	4	216	26	27	22	24	2.00
53821307--53821482	46	3.8	46	75	10	160	28	29	21	21	1.98
53826301--53826485	6	29.8	6	67	18	76	45	13	19	21	1.84
53826260--53826351	37	2.5	37	80	0	103	51	11	15	21	1.75
53826309--53826485	50	3.3	50	81	13	192	45	13	19	21	1.84
53826270--53826435	62	2.7	62	86	0	224	48	13	17	20	1.80
53826368--53826485	25	4.7	25	83	0	146	44	13	21	21	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332