genome.fa.s13.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  131  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42667007--42667177	43	4.0	43	70	8	132	25	16	25	32	1.96
42673982--42674113	39	3.4	39	86	2	167	33	4	18	43	1.70
42675487--42675611	30	4.2	30	76	13	116	55	14	4	25	1.59
42675527--42675612	25	3.1	28	85	11	99	56	13	4	24	1.56
42675553--42675602	16	3.4	16	71	21	54	56	14	4	26	1.56
42675503--42675635	30	4.5	30	81	8	139	54	15	3	26	1.57
42675567--42675652	25	3.4	25	81	10	81	53	17	2	26	1.56
42675602--42675652	12	4.1	12	80	7	57	52	17	1	27	1.55
42675616--42675650	13	2.8	12	87	8	52	51	17	2	28	1.59
42678464--42678541	22	3.5	22	98	0	147	30	16	26	25	1.97
42680165--42680360	98	2.0	98	98	0	383	30	9	17	42	1.81
42680870--42681152	138	2.0	141	86	6	398	44	4	8	42	1.56
42684182--42684216	17	2.1	17	100	0	70	40	17	8	34	1.80
42690098--42690231	51	2.7	49	89	2	196	28	26	19	25	1.99
42693446--42693519	29	2.6	29	89	4	105	25	16	32	25	1.96
42708887--42708936	25	2.0	25	88	0	73	30	4	42	24	1.73
42710333--42710444	27	4.2	26	80	7	116	17	23	21	37	1.94
42710333--42710444	54	2.1	54	84	3	145	17	23	21	37	1.94
42717124--42717235	27	4.1	27	79	7	120	16	22	23	37	1.94
42717124--42717244	54	2.2	54	84	5	156	17	23	23	36	1.95
42737163--42737244	42	2.0	42	95	0	146	34	15	18	31	1.92
42737164--42737258	42	2.3	42	88	0	145	35	16	18	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42740447--42740483	19	1.9	19	100	0	74	45	16	10	27	1.80
42741306--42741538	49	4.7	49	79	4	243	29	26	17	27	1.97
42741301--42741546	98	2.5	99	80	3	280	28	26	17	27	1.97
42745721--42745790	24	2.8	25	86	4	88	25	22	24	27	2.00
42746010--42746093	31	2.7	31	90	1	125	32	15	25	27	1.95
42749655--42749810	42	3.7	42	83	3	188	29	17	24	28	1.97
42749656--42749810	85	1.8	84	83	4	204	29	16	24	29	1.97
42752747--42752930	39	4.7	40	78	7	180	25	21	27	25	2.00
42752800--42752963	79	2.1	78	81	5	188	26	20	27	25	1.99
42755508--42755561	25	2.2	25	100	0	108	35	11	12	40	1.79
42755762--42755857	29	3.2	29	69	11	95	34	4	16	44	1.67
42755743--42755865	60	2.0	60	100	0	246	34	4	16	44	1.69
42755743--42755830	29	2.9	30	66	12	81	32	5	15	45	1.70
42755775--42755867	29	3.1	29	64	11	80	35	4	18	41	1.70
42756038--42756081	10	4.6	10	80	8	56	25	40	0	34	1.56
42762503--42762700	39	5.1	39	93	0	342	23	30	23	22	1.99
42764413--42764443	14	2.1	15	94	5	55	45	12	0	41	1.42
42764815--42764908	23	4.1	23	84	2	127	47	4	24	23	1.69
42769321--42769414	23	4.1	23	85	0	134	47	4	25	22	1.69
42769505--42769598	48	2.0	48	87	8	138	40	27	12	19	1.88
42772020--42772113	48	2.0	48	87	8	138	40	27	12	19	1.88
42775357--42775407	18	2.8	18	87	0	75	29	11	17	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42775555--42775704	75	2.0	75	98	0	291	34	20	8	38	1.82
42777374--42777637	47	5.7	47	75	12	192	26	18	31	23	1.97
42781948--42782266	126	2.5	126	86	2	460	33	18	18	28	1.95
42782339--42782376	18	2.0	20	85	15	53	57	10	5	26	1.53
42785538--42785841	126	2.4	126	88	1	448	36	15	18	29	1.92
42788417--42788866	45	9.9	45	75	8	220	28	20	18	32	1.96
42788466--42788868	45	8.8	45	76	9	309	27	20	18	33	1.96
42788466--42788868	90	4.4	91	77	8	340	27	20	18	33	1.96
42788466--42788868	135	2.9	134	76	8	357	27	20	18	33	1.96
42790635--42790950	47	6.7	46	73	15	213	28	19	28	23	1.99
42790635--42790851	94	2.4	91	83	7	253	26	19	29	23	1.98
42790633--42790900	94	2.9	93	75	11	250	27	19	28	24	1.98
42790825--42790949	48	2.6	48	81	9	141	32	20	24	24	1.98
42798095--42798166	35	2.1	35	91	0	117	31	33	19	15	1.93
42798761--42798799	16	2.4	16	86	0	51	7	28	15	48	1.72
42798761--42798811	24	2.1	23	86	13	68	7	25	13	52	1.67
42806513--42806956	43	10.2	43	89	1	595	12	23	32	31	1.92
42810945--42810983	16	2.5	16	91	4	62	7	25	15	51	1.70
42815853--42815991	40	3.5	40	88	2	165	26	27	20	25	1.99
42823306--42823488	79	2.3	81	83	7	223	24	27	22	24	2.00
42823285--42823488	40	5.1	40	81	8	229	24	27	22	25	2.00
42892945--42892988	22	2.0	22	91	4	72	27	4	18	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42904453--42904625	46	3.8	45	79	11	190	21	19	28	30	1.98
42904450--42904620	93	1.8	93	92	2	290	21	19	29	29	1.98
42910105--42910282	46	3.8	49	78	16	198	28	29	21	20	1.98
42912665--42912757	15	6.2	15	83	5	109	58	13	15	12	1.64
42912663--42912748	30	2.9	30	86	6	120	59	11	16	12	1.61
42912663--42912748	45	1.9	45	90	0	136	59	11	16	12	1.61
42915662--42915838	47	3.8	49	78	15	189	28	29	20	21	1.98
42915669--42915838	93	1.8	91	93	2	295	27	29	21	21	1.99
42927972--42928024	23	2.3	23	83	0	61	13	26	1	58	1.45
42938366--42938424	23	2.4	25	81	13	70	16	23	1	57	1.48
42943000--42943042	21	2.0	21	83	16	54	67	2	6	23	1.27
42943000--42943042	22	2.0	21	86	4	59	67	2	6	23	1.27
42945629--42945747	50	2.3	52	88	2	170	34	14	11	39	1.82
42945616--42945751	50	2.7	50	82	5	159	35	13	11	40	1.80
42946166--42946193	13	2.2	13	100	0	56	57	14	0	28	1.38
42948481--42948528	14	3.6	14	77	11	64	47	0	6	45	1.27
42948481--42948533	26	2.0	26	100	0	106	50	0	7	41	1.30
42951021--42951076	21	2.7	21	80	0	58	25	33	26	14	1.94
42954663--42954706	22	2.0	22	82	8	54	22	0	4	72	1.02
42960883--42961143	54	4.8	54	86	5	330	21	23	18	36	1.95
42961122--42961243	47	2.6	47	94	0	208	26	22	13	36	1.92
42962007--42962065	30	1.9	31	86	3	84	33	23	8	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42963560--42963603	6	7.5	6	92	2	63	59	0	25	15	1.37
42963745--42963807	26	2.4	27	82	10	76	44	7	15	31	1.76
42967430--42967475	23	2.0	24	86	4	67	17	2	28	52	1.56
42974905--42974950	23	2.0	24	86	4	67	17	2	28	52	1.56
42977175--42977260	40	2.2	39	89	2	127	29	27	17	25	1.97
42981522--42981559	6	6.3	6	90	0	58	0	57	0	42	0.98
42984651--42984702	21	2.5	20	76	17	52	59	7	0	32	1.26
42984854--42984893	22	1.9	20	85	10	53	57	20	15	7	1.61
42992030--42992108	25	3.1	25	68	13	79	46	8	7	36	1.64
42992007--42992108	52	2.0	50	90	7	163	47	6	9	36	1.64
42996324--42996494	46	3.7	43	74	14	155	30	26	19	23	1.98
42996326--42996515	46	4.1	45	69	18	124	30	26	19	23	1.98
42996918--42996977	30	2.0	30	90	0	93	30	25	8	36	1.85
43003861--43004030	92	1.8	93	91	1	279	30	28	18	22	1.97
43004448--43004507	30	2.0	30	90	0	93	30	25	8	36	1.85
43010024--43010083	18	3.2	18	75	11	66	6	16	3	73	1.18
43011008--43011061	24	2.2	24	90	0	90	22	1	5	70	1.18
43011009--43011054	12	3.8	12	100	0	92	17	0	6	76	1.00
43012229--43012375	72	2.0	73	84	3	190	29	28	17	25	1.97
43012563--43012594	16	2.0	16	100	0	64	50	25	12	12	1.75
43020195--43020226	15	2.0	17	88	11	50	25	0	31	43	1.55
43022302--43022339	20	1.9	20	94	0	67	68	0	7	23	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43023255--43023339	38	2.2	39	82	4	100	17	17	24	40	1.91
43024428--43024535	54	2.0	54	88	0	162	33	6	17	42	1.75
43026693--43026739	15	3.3	15	76	11	62	53	19	8	19	1.70
43027879--43027927	21	2.3	21	89	0	80	36	8	20	34	1.82
43028182--43028235	27	2.0	27	85	0	72	38	7	14	38	1.75
43039563--43039734	45	3.7	46	79	13	210	20	19	30	29	1.97
43047138--43047164	11	2.5	11	100	0	54	44	0	29	25	1.54
43049230--43049289	18	3.2	18	75	11	66	6	16	3	73	1.18
43050210--43050263	24	2.2	24	90	0	90	22	1	5	70	1.18
43050211--43050256	12	3.8	12	100	0	92	17	0	6	76	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332