Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  289  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96318565--96318591
14
1.9
14
100
0
54
55
7
0
37
1.28
96318696--96318810
60
1.9
60
92
0
194
53
10
1
34
1.46
96318968--96319027
24
2.7
21
78
17
59
0
30
0
70
0.88
96318964--96319019
16
3.5
16
72
18
53
0
28
0
71
0.86
96319332--96319387
28
2.0
28
80
19
64
64
0
0
35
0.94
96319349--96319396
19
2.6
18
83
9
60
68
0
0
31
0.90
96321059--96321086
13
2.2
13
100
0
56
21
7
0
71
1.09
96326070--96326109
3
13.7
3
94
5
73
0
32
0
67
0.91
96326054--96326119
6
10.1
7
82
17
65
0
30
0
69
0.88
96326396--96326448
28
2.0
28
85
7
74
62
0
0
37
0.96
96326875--96326928
24
2.2
25
78
15
60
53
0
1
44
1.11
96327542--96327634
43
2.2
43
84
5
125
51
12
5
30
1.62
96327656--96327695
19
2.2
18
95
4
71
42
15
2
40
1.60
96332310--96332402
43
2.2
44
88
3
136
52
11
6
29
1.62
96332424--96332463
19
2.2
18
90
4
62
42
17
2
37
1.63
96333359--96333420
28
2.2
28
91
0
97
43
11
9
35
1.73
96339405--96339435
15
2.1
15
100
0
62
38
9
12
38
1.77
96353480--96353598
60
2.0
60
88
3
177
45
12
10
31
1.77
96354666--96354694
3
9.7
3
100
0
58
31
0
0
68
0.89
96374878--96374913
18
2.1
17
89
5
54
52
0
47
0
1.00
96382827--96382888
15
4.2
15
71
22
51
38
0
12
48
1.42
96382831--96382890
19
3.2
20
76
23
67
38
0
13
48
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96383006--96383143
40
3.5
40
76
6
129
26
17
23
32
1.96
96385249--96385289
18
2.3
18
87
8
57
29
12
0
58
1.34
96396126--96396156
11
2.8
11
90
0
53
32
0
0
67
0.91
96396341--96396370
14
2.1
14
93
0
51
53
13
13
20
1.72
96399997--96400118
50
2.5
48
84
5
149
34
13
23
27
1.93
96403388--96403445
21
2.9
19
72
20
55
37
0
0
62
0.96
96406802--96407069
144
1.9
143
82
5
335
23
27
18
30
1.98
96406753--96407069
48
6.6
48
76
3
264
23
27
18
29
1.98
96410395--96410432
8
5.0
8
93
6
62
86
0
0
13
0.56
96410395--96410429
7
4.9
7
96
3
61
88
0
0
11
0.51
96411206--96411255
8
6.0
8
78
17
57
86
2
0
12
0.67
96411209--96411256
7
7.0
7
81
13
64
85
2
0
12
0.69
96411206--96411255
13
3.6
14
89
8
75
86
2
0
12
0.67
96411211--96411253
19
2.2
19
91
4
68
86
2
0
11
0.67
96417954--96417978
7
3.6
7
100
0
50
88
0
12
0
0.53
96418233--96418326
48
2.0
48
93
0
161
39
9
19
31
1.84
96422602--96422630
14
2.0
15
93
6
51
34
0
27
37
1.57
96426110--96426151
10
4.1
11
85
14
54
21
2
0
76
0.90
96428358--96428413
24
2.3
24
84
6
69
17
25
21
35
1.95
96431701--96431729
11
2.6
11
100
0
58
31
10
17
41
1.83
96433285--96433340
24
2.5
22
88
5
76
33
0
3
62
1.12
96433285--96433344
11
5.3
11
82
7
75
33
0
5
61
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96435181--96435478
46
6.5
46
92
0
434
40
14
25
19
1.89
96436203--96436340
42
3.3
42
76
2
132
33
15
23
28
1.95
96437309--96437428
51
2.4
51
88
0
168
27
21
11
39
1.88
96443914--96443962
25
2.0
24
84
11
64
36
10
8
44
1.68
96452339--96452378
5
7.8
5
84
15
55
2
22
0
75
0.93
96452339--96452379
14
2.6
16
85
14
59
4
21
0
73
1.02
96452775--96452829
25
2.2
25
100
0
110
34
29
16
20
1.94
96453195--96453243
19
2.6
18
83
6
53
67
6
16
10
1.39
96453243--96453275
13
2.5
14
90
9
52
69
0
30
0
0.88
96457177--96457234
24
2.4
24
91
2
89
34
31
0
34
1.58
96457201--96457593
47
8.4
47
91
0
597
28
29
8
33
1.87
96468805--96468838
17
2.1
16
88
5
50
52
20
0
26
1.46
96469707--96469783
29
2.7
29
76
15
88
64
2
2
29
1.20
96469662--96469793
49
2.7
48
79
15
121
65
3
2
29
1.20
96469971--96470028
19
3.0
20
82
10
75
31
12
0
56
1.35
96474255--96474298
13
3.0
15
84
15
65
59
0
0
40
0.98
96474258--96474292
8
4.4
8
92
0
61
60
0
0
40
0.97
96474279--96474332
21
2.5
22
84
9
65
72
3
1
22
1.10
96474256--96474319
29
2.2
29
83
5
76
65
1
0
32
1.02
96474318--96474386
11
5.9
11
72
12
57
72
1
21
4
1.10
96478785--96478848
25
2.6
24
82
4
83
43
18
21
15
1.87
96488361--96488543
62
3.0
62
91
3
305
37
5
7
49
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96488483--96488559
27
3.2
25
68
19
63
32
6
9
51
1.59
96491499--96491605
43
2.5
43
83
3
117
27
18
21
32
1.97
96494559--96494708
46
3.1
46
74
14
149
30
26
16
26
1.97
96495788--96495894
21
5.0
22
84
7
123
36
24
23
15
1.94
96496099--96496211
29
4.0
29
94
1
185
47
30
3
18
1.65
96496099--96496211
57
2.0
57
91
3
183
47
30
3
18
1.65
96501022--96501056
14
2.5
14
95
0
61
40
5
20
34
1.76
96502476--96502535
31
1.9
31
82
0
75
65
8
0
26
1.21
96504158--96504382
49
4.5
49
85
2
279
26
17
27
28
1.98
96504151--96504382
99
2.3
100
84
2
288
25
18
27
28
1.98
96512773--96513181
35
11.6
35
80
3
320
29
12
25
32
1.93
96512773--96513038
105
2.5
105
87
3
363
31
12
24
30
1.92
96512800--96513177
139
2.7
139
79
2
382
29
13
25
31
1.94
96517090--96517374
142
2.0
142
97
0
534
36
25
15
22
1.94
96517606--96517638
16
2.0
17
88
5
50
63
0
0
36
0.95
96518107--96518162
18
3.1
17
80
14
58
64
1
0
33
1.04
96518102--96518318
20
10.9
20
69
12
81
56
2
5
35
1.36
96518214--96518288
10
7.7
9
74
15
60
57
2
5
34
1.35
96525756--96525789
6
5.8
6
93
3
52
35
0
26
38
1.57
96528183--96528228
19
2.4
19
96
3
83
28
17
8
45
1.78
96534924--96534979
24
2.4
24
80
17
64
33
12
12
41
1.81
96535751--96535775
11
2.3
11
100
0
50
40
20
16
24
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96550701--96550745
21
2.2
20
84
4
54
40
2
17
40
1.62
96553619--96553747
63
2.0
63
89
2
197
43
6
7
41
1.60
96553782--96553859
38
2.0
39
83
16
101
43
6
1
48
1.36
96556434--96557020
301
2.0
294
83
5
732
38
8
14
38
1.77
96561586--96561805
46
4.7
46
76
10
175
27
19
29
23
1.98
96564603--96564633
13
2.4
13
94
0
53
58
6
9
25
1.54
96571886--96571929
6
8.2
6
85
14
53
34
0
18
47
1.49
96571887--96571933
11
4.5
11
87
12
73
34
0
19
46
1.50
96571888--96571933
20
2.2
21
92
7
85
32
0
19
47
1.50
96571894--96571923
15
2.1
14
93
6
51
33
0
20
46
1.51
96574510--96574688
73
2.5
73
88
1
270
22
26
27
22
1.99
96575003--96575035
15
2.3
15
89
5
50
39
24
0
36
1.56
96575700--96575781
26
3.2
25
80
11
96
31
19
28
20
1.97
96575700--96575781
25
3.2
26
83
11
107
31
19
28
20
1.97
96579125--96579259
57
2.4
57
77
14
145
29
9
21
39
1.85
96588828--96588858
11
2.8
11
95
0
53
25
25
6
41
1.79
96595669--96595699
14
2.2
14
94
0
53
29
6
16
48
1.70
96600352--96600454
38
2.8
38
92
2
165
44
3
21
30
1.70
96609729--96609882
77
2.0
77
96
0
281
52
16
8
22
1.70
96615672--96615696
2
12.5
2
100
0
50
52
0
0
48
1.00
96625729--96625760
15
2.1
15
94
0
55
15
6
9
68
1.36
96637590--96637614
6
4.2
6
100
0
50
0
16
0
84
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96637712--96637743
16
1.9
17
93
6
57
43
0
0
56
0.99
96644815--96645075
136
1.9
137
96
0
479
50
5
14
29
1.66
96654630--96654702
25
2.9
25
81
0
74
21
27
15
35
1.93
96664281--96664314
18
1.9
18
94
5
61
55
5
11
26
1.58
96665031--96665090
10
6.0
10
83
11
70
68
1
6
23
1.22
96665031--96665088
30
1.9
30
86
13
84
68
1
6
22
1.22
96665707--96665752
9
5.1
9
84
7
58
2
10
0
86
0.64
96665709--96665752
10
4.4
10
85
5
54
2
9
0
88
0.59
96665707--96665753
19
2.5
19
86
3
69
4
10
0
85
0.74
96666685--96666747
17
3.6
18
85
6
76
79
0
6
14
0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332