Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  16  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4528047--4528116
27
2.6
26
95
2
95
31
28
12
27
1.93
4528047--4528144
28
3.5
28
90
2
135
31
28
13
26
1.94
4528591--4528616
12
2.2
12
100
0
52
42
0
7
50
1.31
4533991--4534027
15
2.5
16
87
12
53
43
10
24
21
1.84
4538103--4538145
5
8.8
5
79
5
52
74
4
0
20
1.00
4539700--4540206
205
2.5
206
92
1
822
28
20
18
32
1.96
4540178--4540285
44
2.4
44
81
3
117
23
25
18
32
1.97
4546237--4546273
15
2.5
16
87
12
53
43
10
24
21
1.84
4558454--4558640
93
2.0
92
96
1
347
36
18
10
34
1.84
4560288--4560327
21
1.9
21
94
0
71
30
17
27
25
1.97
4560397--4560428
3
11.0
3
93
6
57
68
0
31
0
0.90
4561692--4561750
3
20.3
3
81
6
59
1
30
0
67
1.00
4561697--4561750
23
2.5
21
82
8
56
1
29
0
68
1.00
4562454--4562506
3
18.0
3
82
3
54
1
30
0
67
1.01
4561685--4563973
762
3.0
762
99
0
4551
24
20
18
36
1.95
4563216--4563268
3
18.0
3
82
3
54
1
30
0
67
1.01
4565724--4565784
27
2.3
26
88
8
88
39
18
9
32
1.83
4569390--4569419
10
2.9
10
95
5
51
50
0
10
40
1.36
4570501--4570555
24
2.2
24
83
3
65
43
16
14
25
1.86
4570985--4571029
17
2.6
17
85
0
54
22
37
17
22
1.94
4574938--4574980
19
2.2
20
83
4
52
30
16
4
48
1.66
4580790--4580823
18
1.9
18
88
5
52
58
0
29
11
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4585238--4585272
18
1.9
18
88
0
52
25
42
2
28
1.69
4589199--4589307
44
2.5
44
80
3
130
27
18
24
29
1.98
4591373--4591548
46
3.8
46
77
12
189
22
20
28
28
1.98
4591369--4591540
93
1.8
93
91
0
281
22
20
29
27
1.99
4594435--4594462
13
2.2
13
100
0
56
10
7
17
64
1.47
4596751--4596777
2
13.5
2
100
0
54
48
0
0
51
1.00
4605158--4605298
69
2.0
69
98
0
273
40
11
11
36
1.77
4606601--4606641
18
2.2
19
87
12
59
24
14
21
39
1.91
4607661--4607765
54
1.9
54
96
0
192
31
14
18
36
1.90
4608610--4608635
6
4.3
6
100
0
52
0
0
69
30
0.89
4610069--4610130
18
3.4
17
71
20
54
64
4
1
29
1.23
4610349--4610411
30
2.1
31
84
3
83
47
12
1
38
1.51
4610636--4610686
22
2.5
19
84
12
66
29
1
3
64
1.22
4619774--4619814
20
2.1
19
86
4
55
34
4
9
51
1.56
4620334--4620364
13
2.5
13
94
5
55
67
3
6
22
1.28
4620363--4620419
3
18.7
3
85
3
78
63
1
5
29
1.27
4620617--4620740
61
2.0
60
87
6
178
50
9
14
25
1.73
4621634--4621682
25
2.0
25
84
4
64
63
8
0
28
1.23
4621646--4621710
25
2.9
23
82
15
75
66
9
0
24
1.21
4621672--4621710
19
2.0
20
95
5
71
71
10
0
17
1.12
4623651--4623693
16
2.6
16
85
7
50
55
18
0
25
1.42
4627501--4627526
13
2.0
13
100
0
52
23
23
7
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4627831--4627860
14
2.1
15
93
6
53
56
0
0
43
0.99
4630681--4630707
14
1.9
14
100
0
54
40
0
7
51
1.30
4631105--4631132
3
9.3
3
100
0
56
0
32
0
67
0.91
4632651--4632711
30
2.0
30
100
0
122
16
16
19
47
1.83
4636560--4636598
2
19.5
2
89
0
60
43
0
0
56
0.99
4636558--4636602
10
4.5
10
91
0
63
40
0
0
60
0.97
4636962--4637009
19
2.6
19
80
9
55
35
2
14
47
1.56
4637023--4637114
43
2.1
43
90
4
141
27
4
16
52
1.62
4638102--4638163
28
2.2
28
82
2
70
41
4
0
53
1.22
4638149--4638187
17
2.2
18
86
4
53
58
2
2
35
1.25
4639060--4639085
6
4.3
6
100
0
52
84
0
0
15
0.62
4639309--4639356
19
2.7
17
81
15
53
37
12
0
50
1.41
4639349--4639415
35
1.9
35
84
0
89
25
17
7
49
1.73
4640753--4640795
2
21.5
2
100
0
86
0
51
0
48
1.00
4641044--4641104
25
2.4
25
91
5
97
19
11
4
63
1.45
4642864--4642896
12
2.7
13
90
9
52
42
0
0
57
0.98
4642867--4642923
26
2.2
26
81
3
62
33
1
0
64
1.04
4645748--4645840
46
2.0
46
93
0
159
19
25
4
50
1.66
4652135--4652188
28
1.9
28
92
0
90
50
5
5
38
1.49
4662866--4662902
6
6.2
6
100
0
74
64
0
35
0
0.94
4668699--4668746
23
2.1
24
84
7
64
68
8
12
10
1.39
4677186--4677255
29
2.3
29
80
4
68
50
12
14
22
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4678894--4678936
18
2.4
18
88
7
61
46
0
0
53
1.00
4679732--4679785
24
2.2
25
93
3
92
42
0
0
57
0.98
4679789--4679823
18
2.0
17
88
5
52
28
0
5
65
1.15
4682296--4682342
17
2.8
17
80
0
58
38
4
6
51
1.47
4686774--4686840
3
22.7
3
82
8
75
34
2
2
59
1.28
4702554--4702643
28
3.1
28
74
14
92
48
3
0
47
1.18
4702512--4703332
59
14.3
59
84
6
1073
45
4
3
46
1.40
4702639--4702676
19
2.0
20
89
5
60
42
2
5
50
1.39
4703205--4703254
19
2.3
21
74
22
50
50
0
6
44
1.26
4716320--4716406
29
3.0
29
76
3
86
51
29
1
17
1.52
4716767--4716822
29
1.9
29
100
0
112
50
3
0
46
1.19
4722261--4722297
18
2.1
18
90
10
58
45
37
0
16
1.47
4725408--4725445
6
6.3
6
93
0
58
78
0
15
5
0.91
4725987--4726187
100
2.0
100
97
0
375
37
13
16
32
1.87
4730777--4730841
25
2.9
23
82
15
75
66
6
0
27
1.15
4730803--4730841
19
2.0
20
95
5
71
71
5
0
23
1.05
4731383--4731438
24
2.3
25
81
6
71
66
7
0
26
1.18
4731395--4731459
25
2.9
23
82
15
75
66
6
0
27
1.15
4731421--4731459
19
2.0
20
95
5
71
71
5
0
23
1.05
4732907--4732962
27
2.1
27
100
0
112
46
7
12
33
1.69
4739642--4739682
12
3.2
12
80
12
55
9
2
2
85
0.78
4742360--4742418
29
2.1
29
87
3
84
23
5
18
52
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4744914--4744948
17
1.9
17
88
11
52
34
0
0
65
0.93
4750604--4750632
13
2.1
14
93
6
51
65
0
3
31
1.09
4751369--4751445
33
2.3
33
84
0
100
24
27
22
25
2.00
4756610--4756644
13
2.5
13
90
9
52
57
0
2
40
1.14
4760196--4760256
24
2.4
25
81
15
72
60
0
34
4
1.18
4767807--4768245
162
2.6
168
83
6
516
39
17
12
30
1.87
4778839--4779001
45
3.6
45
77
6
184
33
19
25
21
1.97
4778884--4779040
47
3.4
47
72
7
167
35
20
22
21
1.96
4778838--4779040
92
2.2
92
94
0
352
34
20
24
21
1.97
4779055--4779177
47
2.6
47
89
0
192
37
15
22
24
1.93
4779163--4779348
55
3.4
54
80
6
173
37
18
21
23
1.94
4779220--4779367
53
2.8
53
80
5
156
37
17
23
20
1.94
4782679--4782736
27
2.1
27
87
0
80
18
25
41
13
1.88
4782866--4783033
31
5.5
30
69
13
110
40
4
4
51
1.40
4782872--4783036
61
2.7
60
82
3
213
41
4
4
50
1.41
4786202--4786242
21
2.0
21
85
9
57
51
17
2
29
1.58
4787505--4787555
23
2.2
23
82
3
57
29
15
27
27
1.96
4787686--4787748
24
2.6
24
77
7
56
52
17
1
28
1.54
4788313--4788344
16
2.0
16
100
0
64
50
18
6
25
1.70
4813622--4813689
27
2.5
27
85
0
100
26
27
25
20
1.99
4813733--4813795
27
2.3
28
84
10
78
63
0
0
36
0.95
4820841--4820898
28
2.1
28
96
0
107
25
22
10
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4821421--4821447
14
1.9
14
100
0
54
29
22
14
33
1.94
4825515--4825555
21
2.0
21
90
0
64
29
21
29
19
1.98
4828716--4828764
22
2.2
22
82
7
55
22
18
4
55
1.60
4828988--4829020
11
2.9
12
86
13
52
66
0
0
33
0.92
4831028--4831184
39
4.0
39
83
2
156
31
28
21
18
1.97
4831519--4831738
110
2.0
110
99
0
431
23
21
8
46
1.78
4834722--4835569
137
6.2
137
93
0
1435
33
20
19
27
1.96
4834724--4835480
92
8.3
93
68
15
321
33
20
19
27
1.96
4837701--4837776
40
1.9
40
86
5
109
35
23
22
18
1.96
4837770--4837830
31
1.9
32
90
3
97
31
18
22
27
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332