Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  317  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104069012--104069053
20
2.1
20
100
0
84
21
9
35
33
1.86
104075018--104075057
18
2.2
18
86
0
53
27
7
15
50
1.70
104075171--104075226
15
3.8
15
76
21
64
51
0
1
46
1.11
104079756--104079787
15
2.1
15
94
0
55
31
9
0
59
1.29
104080799--104080969
41
4.2
41
93
0
288
16
24
25
32
1.96
104080799--104081042
41
6.0
40
82
7
170
15
23
24
36
1.94
104080799--104081018
82
2.7
82
86
4
275
15
23
24
35
1.94
104080799--104081049
123
2.0
123
81
6
285
16
23
23
36
1.94
104081715--104081761
21
2.3
20
85
3
58
68
4
8
19
1.33
104081878--104081944
25
2.7
25
74
17
68
2
31
0
65
1.07
104083272--104083400
44
2.8
45
82
4
152
34
13
23
28
1.92
104084772--104084818
20
2.3
20
96
0
85
14
6
8
70
1.32
104085064--104085102
20
2.0
20
89
0
60
41
15
5
38
1.69
104086812--104086859
21
2.3
22
86
13
66
35
8
8
47
1.64
104087372--104087402
12
2.5
13
89
10
55
35
12
0
51
1.40
104089545--104089600
19
3.3
19
67
27
61
55
8
0
35
1.31
104089537--104089600
32
2.0
33
93
3
112
53
9
1
35
1.43
104090134--104090192
19
3.2
19
69
9
59
59
1
6
32
1.34
104090719--104090776
8
7.2
8
74
14
57
36
0
0
63
0.94
104090720--104090776
17
3.6
16
80
15
73
35
0
0
64
0.93
104090718--104090779
24
2.6
25
80
12
76
35
0
0
64
0.94
104090720--104090779
16
3.8
16
79
16
70
35
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104092056--104092095
20
2.0
21
85
14
57
47
2
0
50
1.14
104102017--104102114
50
2.0
50
97
0
187
39
21
9
29
1.84
104104224--104104276
27
2.0
27
92
0
88
49
3
9
37
1.53
104123950--104123993
23
1.9
23
90
9
72
43
6
11
38
1.67
104132260--104132304
22
2.0
22
86
4
63
35
0
6
57
1.25
104133175--104133225
16
3.4
14
81
7
57
52
1
1
43
1.23
104135652--104135686
9
3.9
9
88
0
52
5
34
42
17
1.73
104135652--104135686
18
1.9
18
100
0
70
5
34
42
17
1.73
104141094--104141123
16
1.9
16
93
6
53
40
3
0
56
1.16
104141136--104141193
22
2.8
22
84
7
68
51
0
0
48
1.00
104141170--104141205
17
2.1
17
94
0
63
47
0
2
50
1.15
104142109--104142141
13
2.4
14
90
5
50
30
0
3
66
1.06
104142119--104142156
19
2.0
19
85
10
51
36
0
0
63
0.95
104143493--104143553
32
1.9
32
83
3
79
26
16
8
49
1.73
104147637--104147702
34
1.9
35
81
6
82
37
1
4
56
1.29
104152983--104153031
3
14.7
3
80
19
53
38
0
0
61
0.96
104152985--104153025
7
6.0
7
97
2
75
41
0
0
58
0.98
104154418--104154543
14
9.1
14
66
19
61
48
1
1
48
1.20
104154431--104154552
21
6.0
21
68
24
84
46
1
1
50
1.21
104154419--104154585
83
2.2
82
86
12
230
47
1
1
49
1.19
104154470--104154585
38
3.1
39
72
26
124
46
2
0
50
1.21
104165027--104165254
46
4.9
47
87
4
309
21
23
13
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104167251--104167309
11
5.2
11
84
8
73
64
1
0
33
1.04
104169868--104169925
28
2.1
28
96
0
107
37
22
6
32
1.81
104173977--104174018
16
2.6
16
81
11
50
45
21
2
30
1.65
104176884--104177204
46
7.0
47
90
3
420
21
24
15
38
1.92
104184874--104185005
51
2.6
51
76
9
144
40
7
16
34
1.77
104193846--104193890
2
22.5
2
95
0
81
0
46
0
53
1.00
104194429--104194487
30
2.0
29
90
3
91
54
11
6
27
1.62
104195375--104195477
33
3.2
33
66
18
97
34
10
9
44
1.72
104195394--104195509
32
3.6
32
70
15
112
30
8
12
48
1.72
104195371--104195500
65
2.0
65
100
0
260
33
9
10
46
1.71
104198368--104198485
31
3.8
31
88
0
146
27
18
27
26
1.98
104198502--104198658
47
3.3
47
78
8
158
31
14
24
30
1.94
104198554--104198659
46
2.2
49
83
5
128
32
14
24
29
1.94
104198632--104198711
42
1.9
42
89
0
124
35
10
22
32
1.87
104203104--104203146
21
2.0
22
95
4
79
69
13
2
13
1.28
104213689--104213724
17
2.1
17
90
10
56
66
0
0
33
0.92
104218189--104218223
12
2.8
13
86
4
54
22
2
0
74
0.95
104218191--104218232
17
2.4
17
81
18
50
26
2
0
71
0.98
104223765--104223886
30
4.0
30
91
1
190
27
22
6
43
1.78
104223775--104223882
15
7.2
15
69
12
78
27
21
7
43
1.79
104228261--104228452
49
3.9
49
94
1
314
23
15
29
31
1.95
104234977--104235084
15
7.2
15
65
12
69
27
22
6
43
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104234967--104235090
30
4.1
30
92
1
194
27
24
5
42
1.77
104239938--104240027
47
1.9
47
97
0
171
50
14
13
22
1.77
104249162--104249198
17
2.2
17
90
0
56
86
2
8
2
0.76
104251822--104251938
57
2.1
57
100
0
234
44
13
8
33
1.74
104252694--104252751
30
1.9
30
92
0
98
55
6
13
24
1.63
104261535--104261603
32
2.2
32
86
2
95
53
0
4
42
1.20
104268028--104268065
9
4.2
9
83
9
51
47
5
0
47
1.24
104269111--104269145
18
1.9
18
94
0
61
40
22
8
28
1.84
104276241--104276318
38
2.2
32
75
23
93
33
11
20
34
1.89
104283445--104283540
48
2.0
48
97
0
183
26
25
21
27
2.00
104301731--104301789
4
13.5
4
89
3
55
0
22
0
77
0.76
104301731--104301796
5
13.4
5
86
13
77
1
21
0
77
0.85
104303302--104303350
22
2.2
22
81
0
62
63
2
8
26
1.34
104314022--104314066
22
2.0
22
87
8
65
46
15
4
33
1.66
104318249--104318293
22
2.0
22
87
8
65
46
15
4
33
1.66
104319148--104319197
22
2.1
23
82
10
57
58
8
10
24
1.57
104326162--104326191
3
10.0
3
100
0
60
66
0
0
33
0.92
104327958--104328034
28
2.7
29
75
19
88
63
11
2
22
1.39
104329462--104329527
30
2.2
30
81
7
73
53
12
6
28
1.62
104330588--104330621
17
2.1
16
88
5
50
26
0
0
73
0.83
104330897--104330927
15
2.1
15
94
5
55
48
0
0
51
1.00
104331197--104331248
26
2.0
26
84
3
68
48
7
0
44
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104333308--104333369
19
3.1
20
93
6
108
59
0
8
32
1.26
104335378--104335420
8
5.7
7
86
8
50
53
0
2
44
1.13
104335378--104335420
15
2.9
15
83
10
52
53
0
2
44
1.13
104349985--104350068
44
1.9
44
85
4
116
21
13
17
47
1.81
104353666--104353725
31
1.9
31
89
0
93
45
13
10
31
1.76
104372269--104372317
25
2.1
25
85
11
68
16
6
10
67
1.39
104377542--104377574
13
2.3
15
90
10
52
51
12
0
36
1.39
104385724--104385756
15
2.2
15
100
0
66
39
12
21
27
1.88
104390705--104390771
27
2.5
27
82
7
82
38
1
23
35
1.64
104394137--104394179
19
2.3
19
88
8
61
72
0
2
25
0.97
104395640--104395754
44
2.6
44
85
2
149
36
13
21
27
1.92
104395640--104395773
46
3.0
45
82
4
153
35
14
23
26
1.93
104397935--104397984
22
2.2
23
86
10
68
42
12
26
20
1.86
104400840--104400887
21
2.4
21
83
10
57
52
0
0
47
1.00
104401292--104401334
18
2.3
20
84
11
56
51
2
2
44
1.27
104403813--104403839
7
3.9
7
100
0
54
0
11
0
88
0.50
104405392--104405434
21
2.1
20
82
4
50
32
6
20
39
1.80
104409887--104409983
41
2.4
40
87
5
140
36
21
13
28
1.91
104411167--104411212
10
4.6
10
86
5
58
69
2
4
23
1.17
104411161--104411212
20
2.5
20
78
9
61
69
1
3
25
1.16
104413699--104413871
46
3.7
46
76
15
167
21
19
28
30
1.97
104413693--104413863
93
1.8
93
87
2
254
21
19
28
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104419605--104419638
18
1.9
18
88
5
52
58
0
11
29
1.33
104420357--104420394
10
3.8
10
83
13
51
65
2
7
23
1.32
104421607--104421650
21
2.0
23
82
13
56
4
25
2
68
1.20
104421749--104421775
14
1.9
14
100
0
54
81
0
0
18
0.69
104426829--104426909
30
2.7
30
86
3
101
33
23
17
25
1.96
104428977--104429020
22
2.0
22
86
0
61
52
0
0
47
1.00
104429040--104429081
13
2.9
14
80
13
50
54
0
0
45
0.99
104429044--104429080
16
2.3
16
86
13
58
59
0
0
40
0.97
104434267--104434332
31
2.1
31
85
0
87
24
16
18
40
1.90
104436569--104436776
9
22.7
9
66
23
53
60
4
1
33
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332