Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  311  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102145802--102145852
23
2.2
23
86
13
70
23
7
1
66
1.28
102145810--102145860
25
2.1
25
85
10
70
29
5
5
58
1.45
102148762--102149248
47
10.2
47
93
1
794
33
8
28
29
1.87
102148762--102149248
96
5.1
96
92
3
797
33
8
28
29
1.87
102148762--102149248
143
3.4
143
94
1
816
33
8
28
29
1.87
102149366--102149444
37
2.1
37
88
4
115
24
17
31
26
1.97
102151298--102151678
40
9.6
40
85
4
384
24
22
27
25
2.00
102154571--102155065
47
10.2
47
90
6
765
32
8
29
29
1.88
102154571--102155065
96
5.1
96
89
6
750
32
8
29
29
1.88
102154571--102155065
143
3.4
143
90
6
787
32
8
29
29
1.88
102155186--102155264
37
2.1
37
88
4
115
24
17
31
26
1.97
102159527--102159557
14
2.2
14
94
0
53
12
19
16
51
1.76
102163797--102164285
243
2.0
251
88
9
738
28
17
18
36
1.93
102167115--102167146
4
8.2
4
93
6
57
0
25
0
75
0.81
102168859--102168895
2
18.5
2
88
0
56
0
45
2
51
1.15
102170361--102170397
18
2.1
17
90
5
56
70
5
0
24
1.08
102176892--102176980
39
2.2
41
86
5
121
52
4
0
42
1.21
102177089--102177135
20
2.6
18
75
15
51
53
2
0
44
1.12
102180538--102180573
18
2.0
18
94
0
63
63
13
5
16
1.47
102189779--102189820
16
2.6
17
85
11
61
54
7
0
38
1.28
102189779--102189945
17
9.8
17
64
21
66
55
7
3
34
1.45
102189859--102189898
21
1.9
21
84
0
53
57
5
2
35
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102189870--102189945
28
2.8
28
76
13
86
57
3
2
35
1.31
102189871--102189997
42
3.1
39
72
17
105
56
3
5
33
1.41
102190240--102190269
15
2.0
15
93
0
51
56
0
10
33
1.32
102190650--102190698
18
2.6
19
84
12
66
59
8
0
32
1.27
102190659--102190700
20
2.1
20
86
8
59
59
7
0
33
1.25
102190661--102190762
21
5.1
19
66
17
55
54
8
2
33
1.46
102190859--102190917
24
2.4
25
83
13
70
57
6
3
32
1.41
102190889--102190963
30
2.5
30
81
10
82
56
6
2
34
1.40
102200435--102200503
18
4.2
16
76
10
50
66
1
2
28
1.14
102200754--102200797
18
2.5
18
85
10
56
13
0
11
75
1.06
102200784--102200858
10
7.5
10
76
10
73
25
0
0
74
0.82
102200769--102200812
19
2.4
18
81
7
52
18
0
4
77
0.94
102202201--102202266
32
2.0
33
82
5
80
56
1
4
37
1.29
102204912--102204960
22
2.2
23
96
3
91
20
20
4
55
1.60
102212380--102212548
84
2.0
84
94
0
293
20
27
13
39
1.90
102214836--102214902
33
2.0
33
100
0
134
31
23
17
26
1.97
102215590--102215641
22
2.4
22
80
0
59
61
11
9
17
1.55
102216595--102216642
19
2.6
18
90
9
78
72
0
10
16
1.10
102217531--102217578
15
3.1
16
83
16
57
70
2
0
27
0.98
102217522--102217592
11
6.5
11
76
12
58
66
2
1
29
1.15
102222418--102222511
6
15.3
6
75
16
86
47
13
18
20
1.82
102222432--102222511
31
2.6
31
89
0
115
47
13
18
20
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102222648--102222742
27
3.5
26
85
9
120
34
20
25
20
1.96
102222908--102222972
22
3.0
22
80
8
78
33
23
23
20
1.97
102223417--102223889
27
17.6
27
85
2
610
24
20
20
34
1.96
102223427--102223889
81
5.7
81
90
1
678
25
20
20
34
1.96
102223924--102224240
27
11.8
27
84
5
304
30
9
20
39
1.84
102230104--102230151
19
2.6
18
90
9
78
70
0
12
16
1.16
102231044--102231091
15
3.1
15
83
16
62
68
2
2
27
1.11
102231035--102231105
11
6.5
11
76
12
58
64
2
2
29
1.22
102240959--102240985
5
5.4
5
100
0
54
40
18
22
18
1.91
102245690--102245783
35
2.8
33
77
6
98
40
3
0
56
1.15
102245844--102245898
13
4.4
12
75
20
51
40
0
1
58
1.09
102246377--102246438
29
2.1
30
87
3
90
24
3
14
58
1.51
102251740--102251779
21
1.9
21
85
10
55
30
30
20
20
1.97
102253683--102253782
24
4.1
24
77
1
92
44
6
35
15
1.71
102253696--102253814
48
2.5
48
87
5
161
42
3
36
18
1.67
102257197--102257267
21
3.2
21
65
27
56
40
11
23
23
1.87
102257197--102257514
46
6.9
46
90
0
429
42
14
22
21
1.89
102269080--102269113
7
4.9
7
100
0
68
55
0
0
44
0.99
102279443--102279572
66
2.0
66
96
0
242
41
12
7
38
1.71
102289410--102289476
30
2.2
30
86
5
91
44
7
8
38
1.64
102290392--102290454
31
2.0
32
87
9
94
28
3
0
68
1.05
102292066--102292176
33
3.4
34
78
9
106
33
17
27
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102291960--102292156
107
1.8
107
83
4
263
31
16
26
24
1.96
102296727--102296888
80
2.1
78
90
2
252
21
22
30
24
1.99
102296727--102296888
39
4.1
39
89
3
252
21
22
30
24
1.99
102299084--102299137
18
2.9
19
83
8
76
16
22
20
40
1.91
102299087--102299142
6
9.3
6
88
0
67
17
23
17
41
1.90
102310162--102310406
121
2.0
121
96
0
454
29
26
10
33
1.89
102312854--102312891
10
3.8
10
83
10
51
34
2
2
60
1.24
102313460--102313525
32
2.1
31
88
8
98
33
0
0
66
0.92
102316256--102316296
20
2.0
20
86
9
57
73
7
17
2
1.17
102324657--102324688
9
3.6
9
100
0
64
78
9
0
12
0.97
102325838--102325884
23
2.0
23
100
0
94
44
0
25
29
1.54
102329760--102329821
23
2.7
23
83
13
83
64
0
0
35
0.94
102334594--102334635
14
3.0
15
86
13
63
76
11
0
11
1.03
102335914--102335938
13
1.9
13
100
0
50
36
8
8
48
1.62
102339354--102339421
30
2.3
30
84
5
84
47
5
19
27
1.72
102341852--102342127
46
6.0
46
84
9
341
41
13
23
22
1.89
102341852--102342122
92
2.9
92
91
3
422
41
13
23
21
1.88
102341864--102342127
138
1.9
138
89
3
415
40
14
23
21
1.89
102343141--102343185
22
2.0
22
100
0
90
37
0
22
40
1.54
102346715--102346754
20
2.0
21
85
5
55
17
30
25
27
1.97
102348069--102348116
24
2.0
24
84
8
62
33
16
29
20
1.95
102355483--102355951
256
1.8
256
86
0
688
38
18
13
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102357944--102357982
19
2.1
19
85
0
51
15
2
43
38
1.60
102365223--102365328
53
2.0
53
100
0
212
7
28
15
49
1.71
102369952--102370022
22
3.4
21
70
20
67
56
5
9
28
1.54
102369951--102370034
41
2.0
41
93
0
141
52
7
8
32
1.59
102372490--102372524
15
2.2
17
90
10
56
34
5
5
54
1.48
102379538--102379563
13
2.0
13
100
0
52
61
30
0
7
1.24
102380380--102380414
11
3.2
11
88
11
54
0
54
0
45
0.99
102387658--102388775
72
15.5
72
91
2
1715
31
16
17
34
1.92
102387658--102389577
432
4.4
434
81
10
2093
31
16
18
33
1.93
102388612--102389171
202
2.7
201
84
8
673
29
17
20
32
1.96
102389017--102389258
88
2.8
86
84
4
288
28
17
19
35
1.94
102389196--102389576
72
5.2
72
87
1
467
32
16
18
32
1.93
102389554--102389962
217
1.9
216
84
1
550
29
15
19
35
1.93
102390544--102390569
13
2.0
13
100
0
52
61
30
0
7
1.24
102391369--102391403
11
3.2
11
88
11
54
0
54
0
45
0.99
102398143--102398208
29
2.2
30
84
7
82
31
7
9
51
1.62
102401768--102401820
24
2.4
22
84
9
63
28
1
0
69
0.99
102401957--102401996
20
2.0
20
85
4
55
67
0
0
32
0.91
102402297--102402346
20
2.5
21
78
18
61
38
2
0
60
1.09
102413685--102413753
25
2.8
27
81
16
71
66
10
2
20
1.34
102413703--102413766
18
3.5
17
78
10
56
73
6
3
17
1.17
102413717--102413766
23
2.1
24
85
10
68
76
4
2
18
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102415921--102415964
22
2.0
22
100
0
88
63
0
0
36
0.95
102422261--102422309
23
2.1
23
100
0
98
34
14
12
38
1.83
102430641--102430671
15
2.1
15
100
0
62
22
12
6
58
1.58
102430977--102431055
40
2.0
40
95
2
142
25
15
11
48
1.78
102438283--102438324
19
2.3
18
76
11
50
45
0
0
54
0.99
102443329--102443381
26
2.1
26
82
3
63
60
0
3
35
1.15
102443536--102443592
27
2.2
26
84
9
73
49
3
3
43
1.36
102444684--102444726
6
7.2
6
94
0
59
0
60
0
39
0.97
102458532--102458627
40
2.3
40
89
3
147
63
8
28
0
1.23
102461492--102461534
6
7.8
6
80
19
58
32
34
13
18
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332