genome.fa.s13.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  128  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41819972--41820004	11	3.0	11	86	13	50	42	0	3	54	1.15
41819953--41820015	24	2.7	24	87	2	83	41	1	1	55	1.19
41820000--41820046	21	2.2	21	84	0	58	19	10	0	70	1.16
41820089--41820123	14	2.4	15	85	4	54	28	0	0	71	0.86
41820120--41820154	9	3.5	10	88	11	54	20	8	0	71	1.11
41824069--41824102	16	2.1	16	89	10	52	35	0	0	64	0.94
41825294--41825383	27	3.2	27	78	7	83	34	24	22	18	1.96
41825490--41825552	28	2.2	28	91	5	101	30	7	30	31	1.86
41829291--41829450	52	3.1	52	80	8	189	29	25	16	28	1.97
41833385--41833429	19	2.4	19	100	0	90	42	15	26	15	1.87
41833382--41833609	21	11.1	21	75	6	157	46	15	19	17	1.84
41833423--41833608	41	4.5	40	83	9	205	47	15	18	18	1.83
41833423--41833613	83	2.3	82	86	6	262	47	15	18	18	1.82
41838650--41838719	29	2.4	29	87	0	113	15	22	35	25	1.94
41840668--41840699	12	2.7	12	95	0	55	53	15	12	18	1.73
41840671--41840791	45	2.5	51	75	15	137	43	21	16	18	1.87
41840680--41840786	45	2.4	45	87	0	160	42	21	16	18	1.89
41840769--41840802	12	2.8	12	90	0	59	47	14	20	17	1.83
41841006--41841089	40	2.1	40	86	4	116	40	20	7	32	1.79
41841006--41841073	21	3.3	21	68	15	61	38	19	8	33	1.82
41841161--41841198	18	2.1	18	100	0	76	39	23	0	36	1.55
41854829--41854977	56	2.7	55	88	2	226	31	8	14	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41855754--41855792	9	4.2	9	83	6	51	25	38	0	35	1.56
41855750--41855797	19	2.5	19	89	0	78	22	37	2	37	1.66
41867575--41867604	7	4.3	7	95	0	51	83	3	0	13	0.77
41869371--41869420	22	2.2	23	89	3	75	46	20	16	18	1.85
41870751--41870872	39	3.1	39	86	0	163	35	32	16	15	1.90
41872942--41873148	21	10.0	21	67	7	100	16	19	16	47	1.83
41872933--41873047	42	2.7	42	84	0	140	20	18	13	46	1.83
41872942--41873107	42	4.0	42	80	2	138	17	18	16	46	1.84
41873042--41873150	41	2.7	41	86	2	139	12	20	17	49	1.79
41876158--41876224	21	3.2	21	70	4	64	16	26	20	35	1.94
41876120--41876228	42	2.6	41	82	4	112	16	25	18	39	1.91
41879656--41879698	3	14.3	3	95	0	77	65	0	0	34	0.93
41879711--41879749	15	2.5	16	83	4	53	53	0	0	46	1.00
41879684--41879757	25	2.9	25	71	21	64	52	1	2	43	1.23
41879832--41879869	14	2.4	17	87	12	55	52	0	0	47	1.00
41879831--41879894	23	2.7	24	78	9	69	46	3	0	50	1.17
41880332--41880439	25	4.5	24	66	21	75	52	23	10	13	1.71
41883373--41883570	39	5.1	38	90	3	288	21	24	28	25	1.99
41885896--41885972	28	2.7	29	75	15	88	63	1	1	33	1.11
41887172--41887225	25	2.0	27	82	10	67	62	12	5	18	1.48
41890547--41890579	14	2.3	15	89	5	50	51	0	0	48	1.00
41891013--41891038	12	2.2	12	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41896612--41896645	16	2.1	16	88	0	50	41	0	14	44	1.45
41896620--41896650	16	1.9	16	93	0	53	32	3	19	45	1.66
41896751--41896793	20	2.2	20	91	8	70	46	11	4	37	1.61
41896948--41896982	18	1.9	18	88	0	52	28	20	8	42	1.81
41897009--41897050	20	2.1	20	95	0	75	42	9	7	40	1.65
41899240--41899315	40	1.9	40	86	0	107	34	34	14	17	1.90
41899756--41899806	17	2.9	17	85	2	66	13	39	31	15	1.87
41902548--41902593	24	1.9	24	86	8	67	58	0	2	39	1.10
41903762--41903800	21	1.9	20	84	5	51	12	7	15	64	1.49
41904270--41904668	223	1.8	220	85	7	565	25	1	14	58	1.44
41904270--41904668	111	3.6	109	84	7	504	25	1	14	58	1.44
41906102--41906296	97	2.0	97	100	0	390	36	17	12	33	1.87
41909873--41909943	23	3.2	21	72	25	58	40	9	9	39	1.72
41909873--41909939	21	3.0	21	74	22	57	41	10	8	38	1.71
41913645--41913685	11	3.7	11	86	0	55	68	7	0	24	1.15
41913645--41913691	11	4.2	11	81	13	51	70	6	0	23	1.10
41915307--41915356	26	2.0	26	84	4	66	64	8	0	28	1.22
41915345--41915381	19	1.9	19	88	0	56	81	8	0	10	0.89
41915583--41915681	11	8.9	11	80	2	90	60	31	4	4	1.34
41915554--41915681	22	5.7	22	80	3	121	61	28	4	4	1.36
41915583--41915681	33	3.0	33	77	1	108	60	31	4	4	1.34
41915554--41915681	67	1.9	67	80	3	150	61	28	4	4	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41919705--41919754	19	2.6	19	83	0	55	70	0	4	26	1.05
41921216--41921311	10	10.8	9	80	13	71	39	2	2	56	1.23
41921254--41921311	5	11.8	5	94	1	100	41	1	0	56	1.09
41921319--41921348	10	2.9	10	95	5	51	80	0	20	0	0.72
41921320--41921359	17	2.4	16	84	15	55	77	0	22	0	0.77
41921327--41921364	13	3.0	13	82	17	53	73	0	26	0	0.83
41921322--41921364	19	2.4	17	78	21	52	74	0	25	0	0.82
41923605--41923642	20	1.9	20	100	0	76	34	7	21	36	1.82
41924331--41924376	23	2.0	24	82	4	58	30	2	23	43	1.66
41925257--41925313	30	1.9	30	88	0	87	56	14	1	28	1.48
41925297--41925329	12	2.8	12	86	4	50	72	3	0	24	0.98
41926356--41926423	33	2.1	33	81	8	77	38	5	5	50	1.51
41932764--41932799	6	6.0	6	90	9	56	19	0	0	80	0.71
41932764--41932793	11	2.6	11	94	5	51	16	0	0	83	0.65
41932765--41932799	17	2.0	18	94	5	63	20	0	0	80	0.72
41945815--41945916	43	2.4	43	88	3	143	33	6	15	44	1.73
41947783--41947840	12	4.8	12	79	8	64	31	0	3	65	1.09
41948253--41948333	8	10.2	8	83	2	101	29	1	2	66	1.12
41949879--41949926	19	2.5	19	83	10	53	58	2	6	33	1.35
41952927--41952961	18	1.9	18	88	0	52	34	8	20	37	1.83
41955599--41955643	12	3.7	12	81	3	54	75	0	24	0	0.80
41955609--41955642	18	1.9	18	94	5	61	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41956357--41956502	45	3.2	45	95	0	256	22	18	18	40	1.91
41956482--41956528	6	7.7	6	87	2	58	19	23	14	42	1.88
41958739--41958833	50	1.9	50	91	0	154	31	11	15	41	1.83
41963743--41963811	5	14.0	5	73	19	56	60	0	1	37	1.06
41963743--41963812	24	2.9	23	85	8	86	61	0	1	37	1.05
41978473--41978585	59	1.9	59	87	0	163	22	28	23	25	1.99
41982456--41982583	28	4.5	28	88	2	175	28	12	25	32	1.92
41982456--41982583	57	2.2	57	88	2	186	28	12	25	32	1.92
41986136--41986188	22	2.3	23	84	9	65	28	28	16	26	1.97
41986123--41986225	23	4.4	23	78	10	86	27	25	14	33	1.94
41986369--41986426	20	3.0	20	82	2	73	37	6	22	32	1.81
41991300--41991681	126	3.0	126	90	1	568	34	18	20	26	1.96
41993813--41993869	17	3.5	15	84	15	53	38	10	15	35	1.82
41993813--41993891	36	2.1	38	90	9	126	37	10	16	35	1.82
41993813--41993891	19	4.2	19	90	9	126	37	10	16	35	1.82
42000715--42000884	93	1.8	92	93	1	295	28	28	21	21	1.99
42000707--42000881	45	3.8	46	79	13	207	29	28	21	21	1.99
42006153--42006328	47	3.8	46	81	12	225	28	28	20	21	1.98
42006161--42006332	93	1.8	94	96	1	319	28	29	20	21	1.98
42007631--42007684	15	3.5	15	80	12	56	83	0	7	9	0.82
42007649--42007692	23	1.9	23	85	0	61	79	2	4	13	0.98
42008633--42009384	205	3.7	205	94	1	1271	30	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42011088--42011474	47	8.2	47	95	0	657	28	28	9	33	1.88
42014015--42014079	19	3.5	19	87	4	96	40	7	15	36	1.76
42014058--42014102	23	2.0	23	91	4	74	37	4	17	40	1.70
42014068--42014112	23	2.0	23	86	4	65	33	4	15	46	1.66
42015501--42015526	12	2.2	12	100	0	52	38	0	15	46	1.46
42020617--42020998	126	3.0	125	93	1	622	26	20	18	34	1.96
42021323--42021386	19	3.2	22	63	28	52	43	25	0	31	1.55
42022453--42022536	41	2.0	41	83	0	105	25	20	20	34	1.96
42023995--42024376	126	3.0	126	89	0	584	27	18	18	34	1.95
42024702--42024779	38	2.0	37	85	11	104	46	23	0	30	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332